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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTPN6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
100.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
53.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
43.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
40.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
38.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
34.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
30.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTPN6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.1
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
96.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
96.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
94.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
72.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
70.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
59.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
56.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
55.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
46.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
45.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
43.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
42.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
42.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
38.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
38.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
38.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
37.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
37.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
37.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
37.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
36.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
33.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
33.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
32.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
32.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
32.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
31.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
31.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
29.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
29.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
28.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
28.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
28.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
28.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
27.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
18.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.7
661
Tumor
1.2
724
Normal
1.2
917
Tumor
0.8
966
Normal
0.8
492
Normal
0.7
978
Normal
0.7
213
Tumor
0.7
434
Normal
0.7
536
Normal
0.7
524
Normal
0.7
478
Normal
0.6
311
Tumor
0.6
224
Normal
0.6
498
Normal
0.5
861
Tumor
0.5
975
Tumor
0.5
916
Normal
0.5
538
Normal
0.5
814
Normal
0.5
217
Tumor
0.5
444
Normal
0.5
963
Tumor
0.5
262
Normal
0.5
721
Tumor
0.5
192
Normal
0.5
188
Normal
0.4
1043
Tumor
0.4
467
Tumor
0.4
943
Tumor
0.4
976
Normal
0.4
195
Tumor
0.4
852
Normal
0.4
126
Normal
0.4
823
Tumor
0.4
535
Tumor
0.4
1031
Tumor
0.4
713
Tumor
0.4
447
Tumor
0.4
383
Tumor
0.4
385
Tumor
0.3
662
Normal
0.3
384
Normal
0.3
362
Normal
0.3
494
Normal
0.3
815
Tumor
0.3
716
Normal
0.3
1044
Normal
0.3
272
Normal
0.3
212
Normal
0.3
1042
Normal
0.3
142
Normal
0.3
952
Normal
0.3
455
Tumor
0.3
628
Normal
0.3
268
Normal
0.3
191
Tumor
0.3
956
Normal
0.3
778
Normal
0.3
686
Normal
0.3
138
Normal
0.3
366
Normal
0.3
697
Tumor
0.3
415
Tumor
0.3
851
Tumor
0.3
984
Normal
0.3
926
Normal
0.3
954
Normal
0.3
491
Tumor
0.3
914
Normal
0.2
738
Normal
0.2
283
Tumor
0.2
471
Tumor
0.2
558
Normal
0.2
343
Tumor
0.2
516
Normal
0.2
332
Normal
0.2
493
Tumor
0.2
386
Normal
0.2
1026
Normal
0.2
955
Tumor
0.2
146
Normal
0.2
312
Normal
0.2
728
Normal
0.2
727
Tumor
0.2
1028
Normal
0.2
432
Normal
0.2
918
Normal
0.2
937
Tumor
0.2
284
Normal
0.2
938
Normal
0.2
514
Normal
0.2
468
Normal
0.2
355
Tumor
0.2
672
Normal
0.2
185
Tumor
0.2
474
Normal
0.2
617
Tumor
0.2
124
Normal
0.2
881
Tumor
0.2
573
Tumor
0.2
1015
Tumor
0.2
364
Normal
0.2
696
Normal
0.1
874
Normal
0.1
756
Normal
0.1
528
Normal
0.1
141
Tumor
0.1
412
Normal
0.1
367
Tumor
0.1
365
Tumor
0.1
375
Tumor
0.1
816
Normal
0.1
563
Tumor
0.1
958
Normal
0.1
328
Normal
0.1
635
Tumor
0.1
223
Tumor
0.1
877
Tumor
0.1
525
Tumor
0.1
518
Normal
0.1
461
Tumor
0.1
858
Normal
0.1
884
Normal
0.1
922
Normal
0.1
857
Tumor
0.1
187
Tumor
0.1
664
Normal
0.1
666
Normal
0.1
883
Tumor
0.1
1032
Normal
0.1
488
Normal
0.1
114
Normal
0.1
125
Tumor
0.1
391
Tumor
0.1
864
Normal
0.1
136
Normal
0.1
924
Normal
0.1
258
Normal
0.1
214
Normal
0.1
714
Normal
0.1
1014
Normal
0.1
278
Normal
0.1
882
Normal
0.1
983
Tumor
0.1
396
Normal
0.1
981
Tumor
0.1
813
Tumor
0.1
526
Normal
0.1
472
Normal
0.0
722
Normal
0.0
968
Normal
0.0
1016
Normal
0.0
546
Normal
0.0
232
Normal
0.0
912
Normal
0.0
451
Tumor
0.0
554
Normal
0.0
446
Normal
0.0
817
Tumor
0.0
218
Normal
0.0
574
Normal
0.0
866
Normal
0.0
363
Tumor
0.0
261
Tumor
0.0
424
Normal
0.0
665
Tumor
0.0
456
Normal
0.0
862
Normal
0.0
744
Normal
0.0
352
Normal
0.0
944
Normal
0.0
286
Normal
0.0
416
Normal
0.0
951
Tumor
0.0
824
Normal
0.0
1022
Normal
0.0
421
Tumor
0.0
368
Normal
0.0
865
Tumor
0.0
913
Tumor
0.0
422
Normal
0.0
356
Normal
0.0
868
Normal
0.0
344
Normal
0.0
423
Tumor
0.0
448
Normal
0.0
111
Normal
0.0
742
Normal
0.0
392
Normal
0.0
648
Normal
0.0
878
Normal
-0.1
527
Tumor
-0.1
925
Tumor
-0.1
723
Tumor
-0.1
818
Normal
-0.1
867
Tumor
-0.1
698
Normal
-0.1
482
Normal
-0.1
358
Normal
-0.1
777
Tumor
-0.1
394
Normal
-0.1
1046
Normal
-0.1
297
Tumor
-0.1
228
Normal
-0.1
388
Normal
-0.1
564
Normal
-0.1
572
Normal
-0.1
411
Tumor
-0.1
786
Normal
-0.1
715
Tumor
-0.1
298
Normal
-0.1
137
Tumor
-0.1
537
Tumor
-0.1
1045
Tumor
-0.1
695
Tumor
-0.1
746
Normal
-0.1
162
Normal
-0.1
671
Tumor
-0.1
196
Normal
-0.1
466
Normal
-0.1
172
Normal
-0.1
354
Normal
-0.1
395
Tumor
-0.1
428
Normal
-0.1
915
Tumor
-0.1
545
Tumor
-0.1
964
Normal
-0.1
982
Normal
-0.1
387
Tumor
-0.1
568
Normal
-0.1
647
Tumor
-0.1
553
Tumor
-0.1
464
Normal
-0.1
616
Normal
-0.1
413
Tumor
-0.1
186
Normal
-0.1
426
Normal
-0.1
755
Tumor
-0.1
462
Normal
-0.2
618
Normal
-0.2
376
Normal
-0.2
341
Tumor
-0.2
132
Normal
-0.2
452
Normal
-0.2
953
Tumor
-0.2
957
Tumor
-0.2
342
Normal
-0.2
414
Normal
-0.2
873
Tumor
-0.2
443
Tumor
-0.2
113
Tumor
-0.2
534
Normal
-0.2
557
Tumor
-0.2
1025
Tumor
-0.2
663
Tumor
-0.2
221
Tumor
-0.2
314
Normal
-0.2
636
Normal
-0.2
271
Tumor
-0.2
222
Normal
-0.2
642
Normal
-0.2
427
Tumor
-0.2
148
Normal
-0.2
128
Normal
-0.2
737
Tumor
-0.2
484
Normal
-0.2
145
Tumor
-0.2
483
Tumor
-0.2
641
Tumor
-0.2
135
Tumor
-0.2
131
Tumor
-0.3
231
Tumor
-0.3
436
Normal
-0.3
513
Tumor
-0.3
351
Tumor
-0.3
357
Tumor
-0.3
463
Tumor
-0.3
465
Tumor
-0.3
481
Tumor
-0.3
967
Tumor
-0.3
533
Tumor
-0.3
433
Tumor
-0.3
161
Tumor
-0.3
361
Tumor
-0.3
227
Tumor
-0.3
685
Tumor
-0.3
313
Tumor
-0.3
331
Tumor
-0.3
477
Tumor
-0.3
571
Tumor
-0.4
393
Tumor
-0.4
923
Tumor
-0.4
277
Tumor
-0.4
473
Tumor
-0.4
112
Tumor
-0.4
353
Tumor
-0.4
285
Tumor
-0.4
977
Tumor
-0.4
487
Tumor
-0.4
615
Tumor
-0.4
741
Tumor
-0.4
431
Tumor
-0.4
785
Tumor
-0.4
567
Tumor
-0.4
425
Tumor
-0.4
267
Tumor
-0.4
921
Tumor
-0.5
965
Tumor
-0.5
515
Tumor
-0.5
1021
Tumor
-0.5
435
Tumor
-0.5
327
Tumor
-0.5
171
Tumor
-0.5
127
Tumor
-0.5
911
Tumor
-0.5
1013
Tumor
-0.6
523
Tumor
-0.6
497
Tumor
-0.6
147
Tumor
-0.6
257
Tumor
-0.6
1041
Tumor
-0.6
863
Tumor
-0.7
745
Tumor
-0.7
1027
Tumor
-0.7
123
Tumor
-0.8
627
Tumor
-0.8
445
Tumor
-0.8
517
Tumor
-0.9
743
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
