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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C12orf57 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
187.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
904.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
685.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
660.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
583.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
555.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
550.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
524.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
498.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
492.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
491.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
474.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
441.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
439.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
420.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
417.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
414.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
406.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
373.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
366.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
365.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
365.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
363.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
355.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
353.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
351.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
350.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
346.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
344.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
342.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
340.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
338.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
336.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
332.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
328.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
326.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
325.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
323.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
323.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
314.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
314.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
312.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
299.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
299.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
298.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
297.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
295.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
294.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
292.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
283.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
282.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
282.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
280.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
279.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
276.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
276.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
274.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
269.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
268.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
265.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
264.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
262.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
262.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
261.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
261.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
260.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
255.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
254.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
252.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
252.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
251.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
251.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
244.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
243.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
243.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
241.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
241.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
241.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
237.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
236.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
235.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
234.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
233.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
233.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
233.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
231.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
230.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
229.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
227.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
226.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
225.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
221.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
221.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
220.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
220.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
220.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
220.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
218.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
214.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
214.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
213.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
213.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
212.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
212.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
211.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
211.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
211.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
211.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
210.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
210.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
209.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
208.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
208.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
207.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
207.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
207.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
204.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
203.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
202.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
201.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
200.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
200.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
199.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
199.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
197.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
196.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
195.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
195.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
193.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
192.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
191.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
191.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
191.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
191.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
189.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
189.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
187.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
187.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
186.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
185.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
183.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
183.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
183.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
181.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
180.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
180.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
179.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
179.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
179.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
178.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
177.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
176.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
176.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
176.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
175.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
175.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
174.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
170.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
170.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
170.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
170.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
170.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
169.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
168.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
167.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
167.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
167.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
167.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
165.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
165.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
165.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
164.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
163.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
163.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
162.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
162.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
161.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
161.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
160.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
160.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
160.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
160.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
159.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
159.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
157.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
157.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
157.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
156.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
155.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
155.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
155.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
155.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
154.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
153.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
153.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
152.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
150.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
150.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
150.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
150.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
149.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
147.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
147.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
147.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
145.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
145.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
145.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
145.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
144.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
144.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
143.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
143.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
143.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
143.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
142.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
142.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
141.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
141.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
141.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
141.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
141.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
141.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
141.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
140.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
140.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
139.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
138.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
138.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
137.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
136.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
136.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
136.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
136.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
135.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
135.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
135.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
134.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
133.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
133.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
133.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
133.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
132.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
132.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
132.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
132.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
131.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
131.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
130.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
130.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
129.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
129.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
129.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
128.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
128.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
127.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
127.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
127.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
126.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
126.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
125.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
125.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
125.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
125.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
125.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
124.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
124.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
124.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
123.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
123.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
123.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
122.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
120.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
120.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
119.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
119.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
119.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
118.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
117.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
116.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
115.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
115.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
115.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
115.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
113.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
113.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
112.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
112.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
112.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
111.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
110.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
110.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
110.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
109.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
109.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
109.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
108.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
108.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
108.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
107.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
107.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
106.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
106.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
106.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
105.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
105.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
104.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
104.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
103.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
103.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
103.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
103.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
101.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
101.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
101.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
99.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
99.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
99.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
98.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
97.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
96.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
93.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
93.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
93.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
92.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
92.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
91.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
91.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
91.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
91.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
90.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
88.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
87.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
86.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
85.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
85.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
84.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
83.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
83.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
82.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
81.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
79.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
78.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
75.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
72.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
71.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
69.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
69.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
68.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
67.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
67.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
66.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
66.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
65.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
65.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
64.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
63.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
61.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
59.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
54.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
47.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
43.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
31.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C12orf57 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
103.8
Number of samples
231
Samples
Sample
Description
TPM
DO45285
0 years, male, NA, stage:3, alive, 480 days
480.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
383.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
339.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
326.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
314.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
284.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
272.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
271.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
258.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
241.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
237.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
233.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
211.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
200.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
199.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
193.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
190.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
188.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
184.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
179.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
176.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
173.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
172.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
171.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
171.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
169.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
169.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
167.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
166.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
164.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
164.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
163.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
160.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
153.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
152.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
152.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
152.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
151.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
150.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
147.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
145.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
144.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
143.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
143.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
139.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
138.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
138.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
137.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
136.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
133.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
130.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
128.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
128.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
126.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
125.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
125.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
125.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
124.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
124.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
122.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
122.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
119.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
119.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
118.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
117.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
116.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
116.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
114.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
112.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
112.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
112.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
111.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
110.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
109.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
109.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
109.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
109.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
108.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
108.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
107.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
107.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
107.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
105.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
105.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
104.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
103.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
102.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
101.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
101.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
99.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
99.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
98.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
97.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
97.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
97.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
96.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
96.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
96.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
95.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
95.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
94.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
93.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
93.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
92.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
92.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
91.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
91.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
90.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
90.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
90.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
89.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
89.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
89.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
88.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
88.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
87.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
86.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
85.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
84.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
84.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
84.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
83.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
82.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
82.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
82.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
81.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
80.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
80.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
79.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
79.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
78.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
78.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
78.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
77.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
77.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
77.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
77.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
77.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
76.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
75.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
75.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
74.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
74.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
73.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
73.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
73.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
73.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
72.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
72.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
71.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
71.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
71.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
71.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
70.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
70.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
70.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
70.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
70.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
70.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
69.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
69.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
69.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
69.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
69.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
69.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
68.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
68.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
66.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
66.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
65.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
65.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
64.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
64.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
63.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
63.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
62.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
62.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
62.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
62.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
61.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
60.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
60.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
60.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
59.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
59.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
59.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
58.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
58.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
58.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
58.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
58.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
57.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
56.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
55.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
55.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
55.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
55.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
54.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
54.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
54.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
53.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
53.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
52.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
51.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
51.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
51.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
50.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
50.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
48.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
48.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
47.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
45.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
45.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
43.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
41.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
41.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
40.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
40.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
39.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
39.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
39.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
38.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
37.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
37.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
35.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
33.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
33.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
32.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
635
Tumor
1.1
393
Tumor
1.1
131
Tumor
1.0
545
Tumor
0.8
573
Tumor
0.8
357
Tumor
0.8
647
Tumor
0.7
983
Tumor
0.7
965
Tumor
0.7
525
Tumor
0.7
737
Tumor
0.7
355
Tumor
0.6
283
Tumor
0.6
1013
Tumor
0.6
331
Tumor
0.6
957
Tumor
0.6
571
Tumor
0.5
527
Tumor
0.5
383
Tumor
0.5
447
Tumor
0.5
477
Tumor
0.5
923
Tumor
0.5
937
Tumor
0.4
881
Tumor
0.4
975
Tumor
0.4
387
Tumor
0.4
461
Tumor
0.4
1015
Tumor
0.4
1045
Tumor
0.4
465
Tumor
0.4
745
Tumor
0.4
536
Normal
0.4
493
Tumor
0.4
661
Tumor
0.4
161
Tumor
0.4
455
Tumor
0.4
285
Tumor
0.4
727
Tumor
0.4
123
Tumor
0.3
563
Tumor
0.3
483
Tumor
0.3
327
Tumor
0.3
435
Tumor
0.3
515
Tumor
0.3
192
Normal
0.3
913
Tumor
0.3
411
Tumor
0.3
943
Tumor
0.3
1025
Tumor
0.3
478
Normal
0.3
341
Tumor
0.3
497
Tumor
0.3
697
Tumor
0.3
463
Tumor
0.2
523
Tumor
0.2
1021
Tumor
0.2
313
Tumor
0.2
277
Tumor
0.2
743
Tumor
0.2
857
Tumor
0.2
492
Normal
0.2
951
Tumor
0.2
185
Tumor
0.2
498
Normal
0.2
351
Tumor
0.2
814
Normal
0.2
473
Tumor
0.2
433
Tumor
0.2
567
Tumor
0.2
817
Tumor
0.1
311
Tumor
0.1
223
Tumor
0.1
137
Tumor
0.1
538
Normal
0.1
141
Tumor
0.1
124
Normal
0.1
431
Tumor
0.1
924
Normal
0.1
715
Tumor
0.1
415
Tumor
0.1
471
Tumor
0.1
284
Normal
0.1
213
Tumor
0.1
416
Normal
0.1
443
Tumor
0.1
367
Tumor
0.1
513
Tumor
0.1
344
Normal
0.1
171
Tumor
0.1
785
Tumor
0.1
878
Normal
0.1
746
Normal
0.1
952
Normal
0.1
286
Normal
0.1
228
Normal
0.1
685
Tumor
0.1
695
Tumor
0.0
911
Tumor
0.0
813
Tumor
0.0
423
Tumor
0.0
224
Normal
0.0
615
Tumor
0.0
883
Tumor
0.0
135
Tumor
0.0
444
Normal
0.0
867
Tumor
0.0
852
Normal
0.0
312
Normal
0.0
421
Tumor
0.0
385
Tumor
0.0
413
Tumor
0.0
412
Normal
0.0
1022
Normal
0.0
146
Normal
0.0
278
Normal
0.0
535
Tumor
0.0
953
Tumor
0.0
663
Tumor
0.0
877
Tumor
0.0
744
Normal
0.0
861
Tumor
0.0
445
Tumor
0.0
823
Tumor
0.0
434
Normal
0.0
1026
Normal
0.0
352
Normal
0.0
297
Tumor
0.0
984
Normal
0.0
696
Normal
0.0
425
Tumor
0.0
777
Tumor
0.0
617
Tumor
0.0
917
Tumor
0.0
268
Normal
-0.1
874
Normal
-0.1
364
Normal
-0.1
713
Tumor
-0.1
267
Tumor
-0.1
721
Tumor
-0.1
815
Tumor
-0.1
564
Normal
-0.1
128
Normal
-0.1
865
Tumor
-0.1
375
Tumor
-0.1
516
Normal
-0.1
533
Tumor
-0.1
956
Normal
-0.1
392
Normal
-0.1
963
Tumor
-0.1
914
Normal
-0.1
188
Normal
-0.1
756
Normal
-0.1
981
Tumor
-0.1
524
Normal
-0.1
862
Normal
-0.1
1044
Normal
-0.1
938
Normal
-0.1
231
Tumor
-0.1
537
Tumor
-0.1
446
Normal
-0.1
553
Tumor
-0.1
698
Normal
-0.1
554
Normal
-0.1
976
Normal
-0.1
487
Tumor
-0.1
546
Normal
-0.1
958
Normal
-0.1
568
Normal
-0.1
436
Normal
-0.1
386
Normal
-0.1
195
Tumor
-0.1
916
Normal
-0.1
211
Tumor
-0.1
723
Tumor
-0.1
111
Normal
-0.1
882
Normal
-0.1
474
Normal
-0.1
126
Normal
-0.1
491
Tumor
-0.1
467
Tumor
-0.1
391
Tumor
-0.1
742
Normal
-0.1
636
Normal
-0.1
212
Normal
-0.1
448
Normal
-0.1
918
Normal
-0.1
925
Tumor
-0.1
1028
Normal
-0.2
873
Tumor
-0.2
127
Tumor
-0.2
472
Normal
-0.2
1032
Normal
-0.2
921
Tumor
-0.2
616
Normal
-0.2
686
Normal
-0.2
186
Normal
-0.2
353
Tumor
-0.2
271
Tumor
-0.2
755
Tumor
-0.2
915
Tumor
-0.2
864
Normal
-0.2
816
Normal
-0.2
272
Normal
-0.2
1046
Normal
-0.2
332
Normal
-0.2
778
Normal
-0.2
977
Tumor
-0.2
716
Normal
-0.2
572
Normal
-0.2
1043
Tumor
-0.2
148
Normal
-0.2
1042
Normal
-0.2
466
Normal
-0.2
427
Tumor
-0.2
114
Normal
-0.2
738
Normal
-0.2
214
Normal
-0.2
142
Normal
-0.2
261
Tumor
-0.2
518
Normal
-0.2
187
Tumor
-0.2
786
Normal
-0.2
361
Tumor
-0.2
258
Normal
-0.2
147
Tumor
-0.2
968
Normal
-0.2
432
Normal
-0.2
724
Normal
-0.2
112
Tumor
-0.2
967
Tumor
-0.2
526
Normal
-0.2
954
Normal
-0.2
574
Normal
-0.3
722
Normal
-0.3
866
Normal
-0.3
363
Tumor
-0.3
966
Normal
-0.3
514
Normal
-0.3
558
Normal
-0.3
741
Tumor
-0.3
343
Tumor
-0.3
354
Normal
-0.3
494
Normal
-0.3
868
Normal
-0.3
394
Normal
-0.3
557
Tumor
-0.3
262
Normal
-0.3
528
Normal
-0.3
462
Normal
-0.3
162
Normal
-0.3
642
Normal
-0.3
257
Tumor
-0.3
982
Normal
-0.3
456
Normal
-0.3
356
Normal
-0.3
422
Normal
-0.3
232
Normal
-0.4
484
Normal
-0.4
452
Normal
-0.4
1041
Tumor
-0.4
342
Normal
-0.4
944
Normal
-0.4
488
Normal
-0.4
298
Normal
-0.4
1014
Normal
-0.4
824
Normal
-0.4
517
Tumor
-0.4
221
Tumor
-0.4
388
Normal
-0.4
955
Tumor
-0.4
172
Normal
-0.4
314
Normal
-0.4
922
Normal
-0.4
328
Normal
-0.4
1031
Tumor
-0.4
851
Tumor
-0.4
451
Tumor
-0.4
136
Normal
-0.4
926
Normal
-0.4
818
Normal
-0.4
468
Normal
-0.4
138
Normal
-0.4
384
Normal
-0.4
714
Normal
-0.4
964
Normal
-0.4
481
Tumor
-0.4
858
Normal
-0.5
662
Normal
-0.5
671
Tumor
-0.5
728
Normal
-0.5
912
Normal
-0.5
884
Normal
-0.5
1016
Normal
-0.5
132
Normal
-0.5
534
Normal
-0.5
641
Tumor
-0.5
191
Tumor
-0.5
376
Normal
-0.5
218
Normal
-0.5
396
Normal
-0.5
672
Normal
-0.5
464
Normal
-0.5
196
Normal
-0.5
145
Tumor
-0.5
628
Normal
-0.5
362
Normal
-0.5
978
Normal
-0.5
365
Tumor
-0.6
428
Normal
-0.6
368
Normal
-0.6
426
Normal
-0.6
113
Tumor
-0.6
366
Normal
-0.6
482
Normal
-0.6
222
Normal
-0.6
618
Normal
-0.6
217
Tumor
-0.6
424
Normal
-0.6
395
Tumor
-0.7
1027
Tumor
-0.7
358
Normal
-0.7
125
Tumor
-0.7
863
Tumor
-0.7
414
Normal
-0.7
627
Tumor
-0.8
227
Tumor
-0.8
665
Tumor
-0.9
664
Normal
-0.9
648
Normal
-0.9
666
Normal
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.