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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CNOT2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
107.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
45.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
42.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
39.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
37.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
37.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
34.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
32.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
31.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
31.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
30.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
29.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
28.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
22.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
17.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CNOT2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.5
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
273.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
54.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
45.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
41.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
38.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
37.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
36.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
33.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
32.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
31.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
31.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
30.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
28.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
28.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
27.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
23.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
813
Tumor
1.1
965
Tumor
1.0
957
Tumor
1.0
743
Tumor
0.8
983
Tumor
0.8
131
Tumor
0.8
967
Tumor
0.8
921
Tumor
0.8
473
Tumor
0.7
515
Tumor
0.7
951
Tumor
0.7
814
Normal
0.7
497
Tumor
0.7
517
Tumor
0.7
1021
Tumor
0.6
1025
Tumor
0.6
737
Tumor
0.6
745
Tumor
0.6
1013
Tumor
0.6
943
Tumor
0.6
573
Tumor
0.6
863
Tumor
0.6
877
Tumor
0.6
523
Tumor
0.6
285
Tumor
0.5
527
Tumor
0.5
283
Tumor
0.5
937
Tumor
0.5
355
Tumor
0.5
865
Tumor
0.5
647
Tumor
0.5
533
Tumor
0.5
375
Tumor
0.5
727
Tumor
0.5
385
Tumor
0.5
777
Tumor
0.5
713
Tumor
0.5
975
Tumor
0.4
545
Tumor
0.4
525
Tumor
0.4
481
Tumor
0.4
461
Tumor
0.4
881
Tumor
0.4
977
Tumor
0.4
715
Tumor
0.4
477
Tumor
0.4
567
Tumor
0.4
1015
Tumor
0.4
1031
Tumor
0.4
327
Tumor
0.4
211
Tumor
0.4
331
Tumor
0.4
857
Tumor
0.4
661
Tumor
0.4
671
Tumor
0.4
431
Tumor
0.4
917
Tumor
0.4
471
Tumor
0.3
367
Tumor
0.3
851
Tumor
0.3
425
Tumor
0.3
953
Tumor
0.3
257
Tumor
0.3
411
Tumor
0.3
913
Tumor
0.3
395
Tumor
0.3
1041
Tumor
0.3
911
Tumor
0.3
393
Tumor
0.3
815
Tumor
0.3
915
Tumor
0.3
125
Tumor
0.3
923
Tumor
0.3
873
Tumor
0.3
267
Tumor
0.3
721
Tumor
0.3
351
Tumor
0.3
493
Tumor
0.3
112
Tumor
0.3
817
Tumor
0.3
663
Tumor
0.3
518
Normal
0.2
447
Tumor
0.2
297
Tumor
0.2
963
Tumor
0.2
147
Tumor
0.2
277
Tumor
0.2
271
Tumor
0.2
785
Tumor
0.2
513
Tumor
0.2
867
Tumor
0.2
823
Tumor
0.2
535
Tumor
0.2
161
Tumor
0.2
483
Tumor
0.2
916
Normal
0.2
1014
Normal
0.2
387
Tumor
0.2
171
Tumor
0.2
918
Normal
0.2
861
Tumor
0.2
883
Tumor
0.2
311
Tumor
0.2
231
Tumor
0.2
1043
Tumor
0.2
1027
Tumor
0.2
755
Tumor
0.2
537
Tumor
0.2
922
Normal
0.2
955
Tumor
0.2
858
Normal
0.2
463
Tumor
0.1
1028
Normal
0.1
123
Tumor
0.1
383
Tumor
0.1
696
Normal
0.1
756
Normal
0.1
926
Normal
0.1
984
Normal
0.1
818
Normal
0.1
635
Tumor
0.1
363
Tumor
0.1
415
Tumor
0.1
553
Tumor
0.1
924
Normal
0.1
524
Normal
0.1
516
Normal
0.1
944
Normal
0.1
714
Normal
0.1
958
Normal
0.1
952
Normal
0.1
695
Tumor
0.1
357
Tumor
0.1
474
Normal
0.1
536
Normal
0.1
443
Tumor
0.1
455
Tumor
0.1
852
Normal
0.1
141
Tumor
0.1
697
Tumor
0.1
1042
Normal
0.1
478
Normal
0.1
1026
Normal
0.1
966
Normal
0.1
878
Normal
0.1
1045
Tumor
0.1
665
Tumor
0.1
968
Normal
0.1
416
Normal
0.1
433
Tumor
0.1
498
Normal
0.1
1016
Normal
0.1
341
Tumor
0.1
978
Normal
0.1
482
Normal
0.1
487
Tumor
0.1
666
Normal
0.1
954
Normal
0.1
492
Normal
0.1
472
Normal
0.1
728
Normal
0.1
981
Tumor
0.1
364
Normal
0.0
361
Tumor
0.0
982
Normal
0.0
445
Tumor
0.0
213
Tumor
0.0
135
Tumor
0.0
1032
Normal
0.0
1046
Normal
0.0
716
Normal
0.0
313
Tumor
0.0
864
Normal
0.0
824
Normal
0.0
514
Normal
0.0
866
Normal
0.0
724
Normal
0.0
212
Normal
0.0
412
Normal
0.0
571
Tumor
0.0
223
Tumor
0.0
421
Tumor
0.0
563
Tumor
0.0
925
Tumor
0.0
365
Tumor
0.0
686
Normal
0.0
328
Normal
0.0
938
Normal
0.0
641
Tumor
0.0
557
Tumor
0.0
786
Normal
0.0
1022
Normal
0.0
722
Normal
0.0
435
Tumor
0.0
284
Normal
0.0
976
Normal
0.0
816
Normal
0.0
467
Tumor
0.0
451
Tumor
0.0
741
Tumor
0.0
672
Normal
0.0
884
Normal
0.0
187
Tumor
0.0
465
Tumor
0.0
228
Normal
0.0
874
Normal
0.0
538
Normal
0.0
1044
Normal
0.0
964
Normal
0.0
738
Normal
0.0
227
Tumor
0.0
127
Tumor
0.0
528
Normal
0.0
664
Normal
0.0
353
Tumor
0.0
778
Normal
0.0
554
Normal
0.0
221
Tumor
0.0
113
Tumor
0.0
413
Tumor
0.0
534
Normal
0.0
137
Tumor
0.0
526
Normal
-0.1
286
Normal
-0.1
484
Normal
-0.1
427
Tumor
-0.1
882
Normal
-0.1
912
Normal
-0.1
648
Normal
-0.1
723
Tumor
-0.1
617
Tumor
-0.1
572
Normal
-0.1
746
Normal
-0.1
662
Normal
-0.1
628
Normal
-0.1
862
Normal
-0.1
261
Tumor
-0.1
448
Normal
-0.1
494
Normal
-0.1
564
Normal
-0.1
685
Tumor
-0.1
558
Normal
-0.1
546
Normal
-0.1
298
Normal
-0.1
744
Normal
-0.1
224
Normal
-0.1
627
Tumor
-0.1
574
Normal
-0.1
914
Normal
-0.1
491
Tumor
-0.1
356
Normal
-0.1
956
Normal
-0.1
698
Normal
-0.1
742
Normal
-0.1
868
Normal
-0.1
142
Normal
-0.1
191
Tumor
-0.1
462
Normal
-0.2
616
Normal
-0.2
314
Normal
-0.2
436
Normal
-0.2
111
Normal
-0.2
568
Normal
-0.2
446
Normal
-0.2
272
Normal
-0.2
396
Normal
-0.2
145
Tumor
-0.2
146
Normal
-0.2
195
Tumor
-0.2
268
Normal
-0.2
217
Tumor
-0.2
362
Normal
-0.2
278
Normal
-0.2
376
Normal
-0.2
615
Tumor
-0.2
384
Normal
-0.2
444
Normal
-0.2
366
Normal
-0.2
434
Normal
-0.2
391
Tumor
-0.2
192
Normal
-0.2
343
Tumor
-0.2
386
Normal
-0.2
466
Normal
-0.2
126
Normal
-0.2
368
Normal
-0.2
636
Normal
-0.2
138
Normal
-0.3
312
Normal
-0.3
488
Normal
-0.3
392
Normal
-0.3
456
Normal
-0.3
188
Normal
-0.3
468
Normal
-0.3
114
Normal
-0.3
262
Normal
-0.3
432
Normal
-0.3
136
Normal
-0.3
642
Normal
-0.3
258
Normal
-0.3
218
Normal
-0.3
148
Normal
-0.3
358
Normal
-0.3
124
Normal
-0.3
185
Tumor
-0.3
423
Tumor
-0.3
464
Normal
-0.3
128
Normal
-0.3
342
Normal
-0.3
232
Normal
-0.4
186
Normal
-0.4
354
Normal
-0.4
452
Normal
-0.4
388
Normal
-0.4
618
Normal
-0.4
222
Normal
-0.4
422
Normal
-0.4
214
Normal
-0.4
344
Normal
-0.4
352
Normal
-0.4
132
Normal
-0.4
394
Normal
-0.5
196
Normal
-0.5
426
Normal
-0.5
172
Normal
-0.5
332
Normal
-0.5
162
Normal
-0.5
424
Normal
-0.5
414
Normal
-0.6
428
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
