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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:106.6 nTPM
HPA Brain:128.0 nTPM
GTEx:106.6 nTPM
FANTOM5:159.2 Scaled Tags Per Million
Pig:432.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 112.5
1981 Female, age 72, midline 126.6
2565 Male, age 75, midline 120.2
2194 Female, age 79, both hemispheres 108.6
2816 Male, age 47, midline 103.6
2048 Male, age 55, midline 103.4
Cervical spinal cord, dorsal horn
nTPM: 121.5
2296 Male, age 66, both hemispheres 155.0
2173 Female, age 72, unknown 143.3
2069 Male, age 47, both hemispheres 140.9
2297 Male, age 75, both hemispheres 100.7
1877 Male, age 55, unknown 98.7
2721 Male, age 90, both hemispheres 90.7
Cervical spinal cord, ventral horn
nTPM: 128.0
2480 Male, age 75, both hemispheres 163.3
2295 Male, age 66, both hemispheres 138.3
2098 Female, age 72, unknown 133.0
2068 Male, age 55, unknown 122.0
2809 Male, age 90, both hemispheres 117.3
2820 Female, age 79, both hemispheres 94.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 106.6
Samples: 159

Max nTPM: 164.9
Min nTPM: 39.8
Std nTPM: 25.6
Median nTPM: 109.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 164.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 163.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 161.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 157.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 154.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 152.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 147.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 145.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 145.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 144.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 143.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 143.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 141.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 140.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 139.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 139.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 139.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 138.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 136.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 136.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 135.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 135.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 135.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 134.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 134.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 133.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 132.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 132.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 130.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 130.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 130.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 129.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 128.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 127.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 127.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 126.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 125.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 125.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 125.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 124.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 124.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 124.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 124.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 122.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 122.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 122.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 120.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 120.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 119.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 119.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 119.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 117.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 117.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 117.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 117.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 116.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 115.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 114.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 114.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 114.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 114.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 114.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 114.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 113.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 112.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 112.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 111.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 111.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 111.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 111.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 111.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 110.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 110.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 110.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 110.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 110.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 110.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 109.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 109.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 109.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 108.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 108.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 108.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 107.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 107.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 107.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 107.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 107.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 107.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 106.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 106.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 106.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 104.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 104.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 103.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 102.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 102.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 101.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 101.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 100.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 100.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 99.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 99.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 99.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 97.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 97.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 95.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 95.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 94.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 94.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 93.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 92.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 91.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 91.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 90.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 90.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 89.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 89.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 88.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 88.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 87.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 86.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 85.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 85.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 85.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 84.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 83.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 83.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 82.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 82.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 81.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 80.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 80.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 80.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 77.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 76.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 75.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 74.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 72.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 72.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 71.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 69.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 69.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 69.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 68.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 68.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 67.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 67.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 64.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 64.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 63.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 60.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 59.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 58.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 57.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 56.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 55.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 52.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 39.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

159.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 159.2
FF:10159-103A6 76 years, female 190.7
FF:10181-103D1 60 years, female 127.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

432.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 372.1
Samples: 4

Max nTPM: 388.9
Min nTPM: 349.0
Sample A Female 371.1
Sample B Female 388.9
Sample C Male 379.3
Sample D Male 349.0
Ventral spinal cord
nTPM: 432.2
Samples: 4

Max nTPM: 455.4
Min nTPM: 391.3
Sample A Female 437.8
Sample B Female 455.4
Sample C Male 391.3
Sample D Male 444.3

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