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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC38A1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
56.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
39.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
35.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
33.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
31.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
30.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
21.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC38A1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.7
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
68.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
62.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
46.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
45.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
38.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
37.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
27.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
27.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
983
Tumor
2.9
331
Tumor
2.2
815
Tumor
2.1
537
Tumor
1.9
967
Tumor
1.8
535
Tumor
1.8
943
Tumor
1.6
367
Tumor
1.5
527
Tumor
1.5
573
Tumor
1.5
545
Tumor
1.4
223
Tumor
1.4
685
Tumor
1.3
567
Tumor
1.3
491
Tumor
1.2
523
Tumor
1.2
963
Tumor
1.1
517
Tumor
1.0
285
Tumor
1.0
965
Tumor
1.0
865
Tumor
1.0
375
Tumor
1.0
851
Tumor
0.9
135
Tumor
0.8
447
Tumor
0.8
297
Tumor
0.8
737
Tumor
0.7
525
Tumor
0.7
697
Tumor
0.6
661
Tumor
0.6
425
Tumor
0.6
383
Tumor
0.6
211
Tumor
0.6
823
Tumor
0.5
421
Tumor
0.4
311
Tumor
0.4
926
Normal
0.4
671
Tumor
0.4
937
Tumor
0.4
493
Tumor
0.3
724
Normal
0.3
187
Tumor
0.3
217
Tumor
0.3
286
Normal
0.3
536
Normal
0.2
497
Tumor
0.2
925
Tumor
0.2
186
Normal
0.2
188
Normal
0.2
423
Tumor
0.1
557
Tumor
0.1
957
Tumor
0.1
492
Normal
0.1
228
Normal
0.1
953
Tumor
0.1
966
Normal
0.1
224
Normal
0.0
214
Normal
0.0
715
Tumor
0.0
524
Normal
0.0
218
Normal
0.0
483
Tumor
0.0
663
Tumor
0.0
728
Normal
-0.1
147
Tumor
-0.1
1015
Tumor
-0.1
1013
Tumor
-0.1
185
Tumor
-0.1
427
Tumor
-0.1
283
Tumor
-0.1
857
Tumor
-0.1
863
Tumor
-0.1
956
Normal
-0.1
662
Normal
-0.1
665
Tumor
-0.1
861
Tumor
-0.2
488
Normal
-0.2
146
Normal
-0.2
192
Normal
-0.2
413
Tumor
-0.2
498
Normal
-0.2
954
Normal
-0.2
672
Normal
-0.2
212
Normal
-0.2
917
Tumor
-0.2
213
Tumor
-0.2
546
Normal
-0.2
426
Normal
-0.2
918
Normal
-0.2
284
Normal
-0.2
538
Normal
-0.2
964
Normal
-0.2
664
Normal
-0.2
136
Normal
-0.3
267
Tumor
-0.3
922
Normal
-0.3
648
Normal
-0.3
713
Tumor
-0.3
958
Normal
-0.3
145
Tumor
-0.3
924
Normal
-0.3
723
Tumor
-0.3
716
Normal
-0.3
744
Normal
-0.3
384
Normal
-0.3
262
Normal
-0.3
414
Normal
-0.3
313
Tumor
-0.3
272
Normal
-0.3
976
Normal
-0.3
666
Normal
-0.3
722
Normal
-0.3
487
Tumor
-0.3
978
Normal
-0.3
222
Normal
-0.3
915
Tumor
-0.3
742
Normal
-0.4
195
Tumor
-0.4
494
Normal
-0.4
422
Normal
-0.4
864
Normal
-0.4
268
Normal
-0.4
516
Normal
-0.4
568
Normal
-0.4
721
Tumor
-0.4
984
Normal
-0.4
142
Normal
-0.4
196
Normal
-0.4
314
Normal
-0.4
258
Normal
-0.4
191
Tumor
-0.4
332
Normal
-0.4
428
Normal
-0.4
368
Normal
-0.4
727
Tumor
-0.4
131
Tumor
-0.4
738
Normal
-0.4
741
Tumor
-0.5
938
Normal
-0.5
257
Tumor
-0.5
365
Tumor
-0.5
424
Normal
-0.5
868
Normal
-0.5
564
Normal
-0.5
923
Tumor
-0.5
874
Normal
-0.5
261
Tumor
-0.5
232
Normal
-0.5
852
Normal
-0.5
278
Normal
-0.5
968
Normal
-0.5
558
Normal
-0.5
484
Normal
-0.5
312
Normal
-0.5
141
Tumor
-0.5
1014
Normal
-0.5
172
Normal
-0.5
534
Normal
-0.5
944
Normal
-0.5
361
Tumor
-0.5
916
Normal
-0.5
148
Normal
-0.5
572
Normal
-0.6
533
Tumor
-0.6
866
Normal
-0.6
696
Normal
-0.6
366
Normal
-0.6
686
Normal
-0.6
514
Normal
-0.6
817
Tumor
-0.6
714
Normal
-0.6
862
Normal
-0.6
132
Normal
-0.6
1043
Tumor
-0.6
1044
Normal
-0.6
231
Tumor
-0.6
816
Normal
-0.6
162
Normal
-0.6
298
Normal
-0.6
138
Normal
-0.7
975
Tumor
-0.7
554
Normal
-0.7
574
Normal
-0.7
563
Tumor
-0.7
528
Normal
-0.7
362
Normal
-0.7
1046
Normal
-0.7
955
Tumor
-0.7
518
Normal
-0.7
448
Normal
-0.7
952
Normal
-0.8
526
Normal
-0.8
137
Tumor
-0.8
873
Tumor
-0.8
161
Tumor
-0.8
824
Normal
-0.8
221
Tumor
-0.8
818
Normal
-0.8
1016
Normal
-0.8
982
Normal
-0.8
376
Normal
-0.8
698
Normal
-0.9
1045
Tumor
-0.9
921
Tumor
-0.9
227
Tumor
-0.9
858
Normal
-0.9
277
Tumor
-1.0
951
Tumor
-1.0
867
Tumor
-1.0
513
Tumor
-1.0
553
Tumor
-1.1
647
Tumor
-1.2
743
Tumor
-1.2
171
Tumor
-1.3
571
Tumor
-1.3
695
Tumor
-1.4
515
Tumor
-1.4
271
Tumor
-1.4
977
Tumor
-1.6
981
Tumor
-1.9
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
755
Tumor
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
777
Tumor
N/A
415
Tumor
N/A
778
Normal
N/A
416
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
342
Normal
N/A
463
Tumor
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
