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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARHGDIB is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
58.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
581.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
504.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
290.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
286.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
233.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
191.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
188.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
182.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
178.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
162.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
158.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
157.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
157.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
155.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
153.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
148.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
147.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
147.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
142.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
141.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
140.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
132.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
132.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
120.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
119.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
119.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
115.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
114.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
111.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
111.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
109.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
109.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
109.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
106.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
106.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
104.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
104.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
104.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
102.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
101.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
100.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
100.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
100.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
100.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
98.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
98.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
97.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
97.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
97.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
96.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
94.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
94.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
91.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
91.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
90.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
89.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
89.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
88.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
88.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
88.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
88.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
86.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
85.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
85.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
84.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
83.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
82.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
82.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
81.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
81.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
81.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
80.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
80.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
79.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
78.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
78.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
77.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
77.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
76.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
76.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
76.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
75.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
74.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
74.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
74.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
73.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
73.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
73.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
73.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
73.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
71.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
71.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
71.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
70.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
70.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
68.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
68.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
67.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
67.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
66.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
66.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
66.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
65.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
64.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
64.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
63.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
63.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
63.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
63.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
62.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
62.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
61.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
61.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
61.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
61.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
61.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
61.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
60.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
60.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
59.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
59.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
59.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
58.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
58.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
58.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
58.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
58.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
57.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
57.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
57.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
56.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
56.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
56.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
56.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
55.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
55.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
55.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
55.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
54.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
54.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
53.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
52.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
52.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
52.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
52.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
52.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
51.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
51.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
51.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
51.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
51.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
50.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
50.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
50.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
50.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
49.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
49.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
49.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
49.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
48.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
48.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
48.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
48.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
48.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
47.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
47.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
47.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
46.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
46.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
46.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
46.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
46.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
46.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
46.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
45.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
45.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
45.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
45.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
44.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
44.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
43.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
43.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
43.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
43.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
43.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
43.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
43.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
43.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
43.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
42.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
42.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
42.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
42.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
42.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
42.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
42.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
41.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
41.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
41.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
41.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
41.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
41.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
41.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
41.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
41.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
40.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
40.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
40.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
40.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
40.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
40.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
39.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
39.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
39.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
38.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
38.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
38.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
38.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
37.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
37.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
37.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
36.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
36.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
36.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
36.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
36.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
35.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
35.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
35.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
35.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
35.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
35.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
34.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
34.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
34.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
34.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
34.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
34.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
34.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
33.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
33.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
33.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
33.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
33.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
33.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
33.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
33.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
32.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
32.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
32.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
31.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
30.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
30.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
30.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
30.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
29.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
29.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
28.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
28.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
28.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
28.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
27.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
27.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
27.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
26.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
26.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
25.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
25.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
25.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
25.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
25.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
25.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
24.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
23.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
23.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
23.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
23.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
19.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
14.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARHGDIB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
82.5
Number of samples
231
Samples
Sample
Description
TPM
DO23547
0 years, male, NA, stage:1, alive, 1020 days
530.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
463.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
410.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
375.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
340.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
339.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
333.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
294.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
289.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
281.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
279.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
277.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
269.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
235.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
230.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
214.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
203.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
195.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
194.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
191.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
190.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
186.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
182.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
174.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
166.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
151.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
149.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
144.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
142.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
141.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
141.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
141.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
138.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
137.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
136.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
135.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
130.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
130.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
124.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
122.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
117.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
114.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
114.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
112.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
112.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
112.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
110.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
110.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
108.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
108.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
106.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
104.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
104.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
103.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
102.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
102.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
100.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
100.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
100.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
99.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
99.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
98.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
97.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
95.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
93.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
92.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
92.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
91.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
88.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
85.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
83.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
82.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
81.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
81.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
81.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
80.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
80.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
80.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
79.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
79.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
79.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
79.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
78.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
78.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
77.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
77.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
77.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
77.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
77.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
76.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
76.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
75.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
74.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
74.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
74.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
73.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
72.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
72.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
72.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
72.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
71.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
71.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
71.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
70.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
70.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
69.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
65.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
64.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
63.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
63.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
63.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
62.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
61.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
61.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
60.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
59.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
57.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
57.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
55.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
54.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
54.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
53.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
53.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
53.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
52.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
52.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
52.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
52.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
51.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
50.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
50.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
49.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
49.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
49.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
48.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
48.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
48.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
47.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
47.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
46.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
46.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
45.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
45.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
44.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
44.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
43.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
43.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
42.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
41.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
41.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
40.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
40.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
40.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
39.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
39.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
39.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
39.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
38.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
38.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
37.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
36.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
35.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
34.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
33.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
33.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
33.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
33.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
31.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
30.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
30.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
29.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
28.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
28.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
28.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
26.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
25.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
22.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.3
311
Tumor
1.2
917
Tumor
1.1
724
Normal
1.0
444
Normal
1.0
536
Normal
0.9
434
Normal
0.8
492
Normal
0.8
478
Normal
0.8
467
Tumor
0.8
661
Tumor
0.8
498
Normal
0.7
188
Normal
0.7
966
Normal
0.7
814
Normal
0.7
524
Normal
0.6
823
Tumor
0.6
223
Tumor
0.6
268
Normal
0.6
538
Normal
0.6
224
Normal
0.6
192
Normal
0.6
195
Tumor
0.6
713
Tumor
0.6
943
Tumor
0.6
213
Tumor
0.5
535
Tumor
0.5
343
Tumor
0.5
126
Normal
0.5
384
Normal
0.5
721
Tumor
0.5
283
Tumor
0.5
978
Normal
0.5
916
Normal
0.5
455
Tumor
0.5
185
Tumor
0.5
963
Tumor
0.5
447
Tumor
0.5
262
Normal
0.5
976
Normal
0.4
491
Tumor
0.4
272
Normal
0.4
217
Tumor
0.3
375
Tumor
0.3
686
Normal
0.3
421
Tumor
0.3
471
Tumor
0.3
852
Normal
0.3
383
Tumor
0.3
362
Normal
0.3
146
Normal
0.3
954
Normal
0.3
284
Normal
0.3
212
Normal
0.3
386
Normal
0.3
813
Tumor
0.3
778
Normal
0.3
124
Normal
0.3
716
Normal
0.2
493
Tumor
0.2
914
Normal
0.2
1015
Tumor
0.2
975
Tumor
0.2
385
Tumor
0.2
817
Tumor
0.2
861
Tumor
0.2
516
Normal
0.2
662
Normal
0.2
1031
Tumor
0.2
138
Normal
0.2
881
Tumor
0.2
366
Normal
0.2
672
Normal
0.2
851
Tumor
0.2
563
Tumor
0.2
432
Normal
0.2
628
Normal
0.2
984
Normal
0.2
395
Tumor
0.1
816
Normal
0.1
857
Tumor
0.1
352
Normal
0.1
344
Normal
0.1
958
Normal
0.1
1044
Normal
0.1
141
Tumor
0.1
461
Tumor
0.1
666
Normal
0.1
142
Normal
0.1
738
Normal
0.1
938
Normal
0.1
1028
Normal
0.1
494
Normal
0.1
697
Tumor
0.1
312
Normal
0.1
744
Normal
0.1
952
Normal
0.1
545
Tumor
0.1
528
Normal
0.1
671
Tumor
0.0
1042
Normal
0.0
913
Tumor
0.0
187
Tumor
0.0
394
Normal
0.0
328
Normal
0.0
396
Normal
0.0
415
Tumor
0.0
488
Normal
0.0
728
Normal
0.0
696
Normal
0.0
424
Normal
0.0
368
Normal
0.0
125
Tumor
0.0
968
Normal
0.0
1032
Normal
0.0
558
Normal
0.0
468
Normal
0.0
297
Tumor
0.0
664
Normal
0.0
413
Tumor
0.0
355
Tumor
0.0
363
Tumor
0.0
926
Normal
0.0
1014
Normal
0.0
191
Tumor
0.0
874
Normal
0.0
714
Normal
0.0
364
Normal
0.0
956
Normal
-0.1
474
Normal
-0.1
1043
Tumor
-0.1
925
Tumor
-0.1
918
Normal
-0.1
392
Normal
-0.1
136
Normal
-0.1
546
Normal
-0.1
878
Normal
-0.1
723
Tumor
-0.1
858
Normal
-0.1
1026
Normal
-0.1
884
Normal
-0.1
1045
Tumor
-0.1
332
Normal
-0.1
573
Tumor
-0.1
924
Normal
-0.1
412
Normal
-0.1
365
Tumor
-0.1
786
Normal
-0.1
214
Normal
-0.1
1016
Normal
-0.1
111
Normal
-0.1
698
Normal
-0.1
882
Normal
-0.1
722
Normal
-0.1
388
Normal
-0.1
922
Normal
-0.1
742
Normal
-0.1
877
Tumor
-0.1
114
Normal
-0.1
868
Normal
-0.1
391
Tumor
-0.1
354
Normal
-0.1
218
Normal
-0.2
756
Normal
-0.2
1046
Normal
-0.2
518
Normal
-0.2
785
Tumor
-0.2
472
Normal
-0.2
525
Tumor
-0.2
145
Tumor
-0.2
448
Normal
-0.2
514
Normal
-0.2
456
Normal
-0.2
617
Tumor
-0.2
172
Normal
-0.2
228
Normal
-0.2
356
Normal
-0.2
727
Tumor
-0.2
944
Normal
-0.2
286
Normal
-0.2
162
Normal
-0.2
367
Tumor
-0.2
526
Normal
-0.2
553
Tumor
-0.2
818
Normal
-0.2
883
Tumor
-0.2
574
Normal
-0.2
433
Tumor
-0.2
428
Normal
-0.2
427
Tumor
-0.2
278
Normal
-0.2
137
Tumor
-0.2
483
Tumor
-0.2
258
Normal
-0.2
446
Normal
-0.2
376
Normal
-0.2
416
Normal
-0.3
982
Normal
-0.3
815
Tumor
-0.3
554
Normal
-0.3
824
Normal
-0.3
387
Tumor
-0.3
864
Normal
-0.3
866
Normal
-0.3
1022
Normal
-0.3
232
Normal
-0.3
161
Tumor
-0.3
964
Normal
-0.3
534
Normal
-0.3
451
Tumor
-0.3
641
Tumor
-0.3
462
Normal
-0.3
261
Tumor
-0.3
715
Tumor
-0.3
422
Normal
-0.3
867
Tumor
-0.3
298
Normal
-0.3
466
Normal
-0.3
482
Normal
-0.3
648
Normal
-0.3
464
Normal
-0.3
983
Tumor
-0.3
463
Tumor
-0.4
148
Normal
-0.4
414
Normal
-0.4
636
Normal
-0.4
955
Tumor
-0.4
862
Normal
-0.4
196
Normal
-0.4
572
Normal
-0.4
132
Normal
-0.4
135
Tumor
-0.4
342
Normal
-0.4
665
Tumor
-0.4
358
Normal
-0.4
937
Tumor
-0.4
755
Tumor
-0.4
186
Normal
-0.4
353
Tumor
-0.5
915
Tumor
-0.5
557
Tumor
-0.5
1025
Tumor
-0.5
452
Normal
-0.5
564
Normal
-0.5
746
Normal
-0.5
277
Tumor
-0.5
951
Tumor
-0.5
616
Normal
-0.5
222
Normal
-0.5
128
Normal
-0.5
327
Tumor
-0.5
331
Tumor
-0.5
642
Normal
-0.5
484
Normal
-0.5
481
Tumor
-0.6
423
Tumor
-0.6
426
Normal
-0.6
923
Tumor
-0.6
113
Tumor
-0.6
912
Normal
-0.6
568
Normal
-0.6
497
Tumor
-0.6
227
Tumor
-0.6
443
Tumor
-0.6
981
Tumor
-0.6
953
Tumor
-0.6
977
Tumor
-0.6
221
Tumor
-0.7
314
Normal
-0.7
271
Tumor
-0.7
341
Tumor
-0.7
231
Tumor
-0.7
627
Tumor
-0.7
921
Tumor
-0.7
285
Tumor
-0.7
618
Normal
-0.7
685
Tumor
-0.7
436
Normal
-0.7
537
Tumor
-0.7
647
Tumor
-0.7
351
Tumor
-0.7
863
Tumor
-0.8
865
Tumor
-0.8
361
Tumor
-0.8
663
Tumor
-0.8
967
Tumor
-0.8
873
Tumor
-0.8
1027
Tumor
-0.9
431
Tumor
-0.9
965
Tumor
-0.9
1041
Tumor
-0.9
615
Tumor
-0.9
127
Tumor
-0.9
515
Tumor
-0.9
517
Tumor
-0.9
695
Tumor
-1.0
957
Tumor
-1.0
527
Tumor
-1.0
513
Tumor
-1.0
737
Tumor
-1.0
257
Tumor
-1.0
473
Tumor
-1.0
477
Tumor
-1.0
147
Tumor
-1.1
411
Tumor
-1.1
487
Tumor
-1.1
571
Tumor
-1.1
1021
Tumor
-1.1
425
Tumor
-1.1
777
Tumor
-1.2
533
Tumor
-1.2
131
Tumor
-1.2
393
Tumor
-1.2
267
Tumor
-1.2
1013
Tumor
-1.3
171
Tumor
-1.3
743
Tumor
-1.3
445
Tumor
-1.4
313
Tumor
-1.4
567
Tumor
-1.4
112
Tumor
-1.4
523
Tumor
-1.4
465
Tumor
-1.5
741
Tumor
-1.5
123
Tumor
-1.5
911
Tumor
-1.5
745
Tumor
-1.5
357
Tumor
-1.6
435
Tumor
-1.6
635
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
