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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OAS2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
166.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
93.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
86.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
78.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
77.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
57.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
47.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
46.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
39.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
37.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
35.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
35.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
33.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
32.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
32.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
27.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
27.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
27.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
25.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
24.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
23.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OAS2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.8
Number of samples
231
Samples
Sample
Description
TPM
DO23514
0 years, male, NA, stage:2, alive, 1290 days
97.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
47.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
42.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
40.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
40.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
38.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
37.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
37.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
34.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
33.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
31.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
31.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
19.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
113
Tumor
2.1
557
Tumor
1.6
955
Tumor
1.5
327
Tumor
1.4
262
Normal
1.4
343
Tumor
1.4
416
Normal
1.3
434
Normal
1.2
467
Tumor
1.2
344
Normal
1.2
956
Normal
1.2
1015
Tumor
1.2
865
Tumor
1.1
218
Normal
1.1
311
Tumor
1.0
358
Normal
1.0
213
Tumor
0.9
452
Normal
0.9
126
Normal
0.9
966
Normal
0.9
536
Normal
0.8
396
Normal
0.8
662
Normal
0.8
214
Normal
0.8
884
Normal
0.8
524
Normal
0.8
286
Normal
0.8
128
Normal
0.8
188
Normal
0.8
448
Normal
0.7
217
Tumor
0.7
433
Tumor
0.7
814
Normal
0.7
283
Tumor
0.6
386
Normal
0.6
982
Normal
0.6
554
Normal
0.6
666
Normal
0.6
1043
Tumor
0.6
1044
Normal
0.6
136
Normal
0.6
224
Normal
0.6
268
Normal
0.6
661
Tumor
0.6
272
Normal
0.6
376
Normal
0.5
415
Tumor
0.5
261
Tumor
0.5
422
Normal
0.5
1028
Normal
0.5
628
Normal
0.5
861
Tumor
0.5
721
Tumor
0.5
978
Normal
0.5
451
Tumor
0.5
981
Tumor
0.5
1046
Normal
0.5
883
Tumor
0.4
142
Normal
0.4
111
Normal
0.4
914
Normal
0.4
284
Normal
0.4
383
Tumor
0.4
964
Normal
0.4
916
Normal
0.4
918
Normal
0.4
228
Normal
0.3
362
Normal
0.3
352
Normal
0.3
368
Normal
0.3
447
Tumor
0.3
353
Tumor
0.3
138
Normal
0.3
211
Tumor
0.3
857
Tumor
0.3
926
Normal
0.3
212
Normal
0.3
414
Normal
0.3
124
Normal
0.3
558
Normal
0.3
917
Tumor
0.2
553
Tumor
0.2
952
Normal
0.2
915
Tumor
0.2
778
Normal
0.2
141
Tumor
0.2
984
Normal
0.2
816
Normal
0.2
954
Normal
0.2
258
Normal
0.2
858
Normal
0.2
446
Normal
0.2
538
Normal
0.2
412
Normal
0.1
196
Normal
0.1
114
Normal
0.1
421
Tumor
0.1
366
Normal
0.1
686
Normal
0.1
468
Normal
0.1
627
Tumor
0.1
172
Normal
0.1
728
Normal
0.1
874
Normal
0.1
456
Normal
0.1
432
Normal
0.1
232
Normal
0.1
574
Normal
0.1
127
Tumor
0.0
195
Tumor
0.0
187
Tumor
0.0
354
Normal
0.0
384
Normal
0.0
314
Normal
0.0
648
Normal
0.0
568
Normal
0.0
572
Normal
0.0
866
Normal
0.0
968
Normal
0.0
518
Normal
0.0
516
Normal
0.0
724
Normal
0.0
636
Normal
0.0
278
Normal
0.0
813
Tumor
-0.1
922
Normal
-0.1
466
Normal
-0.1
1045
Tumor
-0.1
664
Normal
-0.1
455
Tumor
-0.1
364
Normal
-0.1
132
Normal
-0.1
146
Normal
-0.1
222
Normal
-0.1
436
Normal
-0.1
192
Normal
-0.1
186
Normal
-0.1
716
Normal
-0.1
494
Normal
-0.1
698
Normal
-0.1
851
Tumor
-0.1
392
Normal
-0.1
444
Normal
-0.1
528
Normal
-0.1
1022
Normal
-0.1
223
Tumor
-0.1
1016
Normal
-0.1
464
Normal
-0.1
492
Normal
-0.1
944
Normal
-0.1
342
Normal
-0.1
943
Tumor
-0.1
375
Tumor
-0.2
498
Normal
-0.2
514
Normal
-0.2
148
Normal
-0.2
461
Tumor
-0.2
742
Normal
-0.2
738
Normal
-0.2
786
Normal
-0.2
493
Tumor
-0.2
924
Normal
-0.2
534
Normal
-0.2
526
Normal
-0.2
332
Normal
-0.2
391
Tumor
-0.2
328
Normal
-0.2
564
Normal
-0.2
527
Tumor
-0.2
722
Normal
-0.2
474
Normal
-0.2
267
Tumor
-0.2
488
Normal
-0.2
815
Tumor
-0.2
746
Normal
-0.2
1014
Normal
-0.2
642
Normal
-0.2
357
Tumor
-0.2
535
Tumor
-0.2
356
Normal
-0.2
938
Normal
-0.2
221
Tumor
-0.3
696
Normal
-0.3
367
Tumor
-0.3
864
Normal
-0.3
1026
Normal
-0.3
145
Tumor
-0.3
515
Tumor
-0.3
424
Normal
-0.3
385
Tumor
-0.3
395
Tumor
-0.3
185
Tumor
-0.3
428
Normal
-0.3
462
Normal
-0.3
312
Normal
-0.3
616
Normal
-0.3
977
Tumor
-0.3
135
Tumor
-0.3
365
Tumor
-0.3
162
Normal
-0.3
672
Normal
-0.3
756
Normal
-0.3
191
Tumor
-0.3
137
Tumor
-0.3
125
Tumor
-0.3
852
Normal
-0.3
715
Tumor
-0.4
546
Normal
-0.4
478
Normal
-0.4
297
Tumor
-0.4
477
Tumor
-0.4
755
Tumor
-0.4
862
Normal
-0.4
976
Normal
-0.4
491
Tumor
-0.4
957
Tumor
-0.4
298
Normal
-0.4
147
Tumor
-0.4
744
Normal
-0.4
271
Tumor
-0.4
341
Tumor
-0.4
388
Normal
-0.4
618
Normal
-0.4
257
Tumor
-0.4
1032
Normal
-0.4
958
Normal
-0.4
723
Tumor
-0.5
1031
Tumor
-0.5
913
Tumor
-0.5
912
Normal
-0.5
714
Normal
-0.5
963
Tumor
-0.5
925
Tumor
-0.5
472
Normal
-0.5
443
Tumor
-0.5
824
Normal
-0.5
873
Tumor
-0.5
1042
Normal
-0.5
975
Tumor
-0.5
868
Normal
-0.5
426
Normal
-0.5
881
Tumor
-0.6
983
Tumor
-0.6
867
Tumor
-0.6
882
Normal
-0.6
394
Normal
-0.6
823
Tumor
-0.6
465
Tumor
-0.6
878
Normal
-0.6
161
Tumor
-0.6
665
Tumor
-0.6
484
Normal
-0.6
227
Tumor
-0.6
727
Tumor
-0.6
112
Tumor
-0.6
615
Tumor
-0.6
533
Tumor
-0.7
663
Tumor
-0.7
413
Tumor
-0.7
481
Tumor
-0.7
277
Tumor
-0.7
573
Tumor
-0.7
525
Tumor
-0.7
563
Tumor
-0.7
463
Tumor
-0.7
427
Tumor
-0.7
785
Tumor
-0.7
431
Tumor
-0.7
363
Tumor
-0.7
745
Tumor
-0.7
171
Tumor
-0.7
361
Tumor
-0.7
713
Tumor
-0.7
923
Tumor
-0.7
231
Tumor
-0.8
482
Normal
-0.8
911
Tumor
-0.8
523
Tumor
-0.8
497
Tumor
-0.8
617
Tumor
-0.8
471
Tumor
-0.8
953
Tumor
-0.8
411
Tumor
-0.8
571
Tumor
-0.9
697
Tumor
-0.9
818
Normal
-0.9
1025
Tumor
-0.9
393
Tumor
-0.9
351
Tumor
-0.9
817
Tumor
-0.9
423
Tumor
-0.9
537
Tumor
-0.9
487
Tumor
-0.9
937
Tumor
-1.0
641
Tumor
-1.0
387
Tumor
-1.0
355
Tumor
-1.0
513
Tumor
-1.0
671
Tumor
-1.0
123
Tumor
-1.0
741
Tumor
-1.0
965
Tumor
-1.0
647
Tumor
-1.1
545
Tumor
-1.1
445
Tumor
-1.1
737
Tumor
-1.1
951
Tumor
-1.1
921
Tumor
-1.1
331
Tumor
-1.2
483
Tumor
-1.2
777
Tumor
-1.2
863
Tumor
-1.2
1013
Tumor
-1.3
695
Tumor
-1.3
1041
Tumor
-1.3
313
Tumor
-1.3
635
Tumor
-1.3
567
Tumor
-1.3
685
Tumor
-1.3
877
Tumor
-1.4
435
Tumor
-1.4
967
Tumor
-1.4
473
Tumor
-1.4
285
Tumor
-1.4
517
Tumor
-1.5
425
Tumor
-1.6
1021
Tumor
-1.6
1027
Tumor
-1.7
131
Tumor
-1.9
743
Tumor
-2.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
