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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDK2AP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
247.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
176.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
169.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
154.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
146.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
135.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
130.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
126.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
120.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
118.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
100.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
96.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
92.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
89.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
88.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
87.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
86.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
83.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
82.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
79.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
78.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
77.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
76.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
75.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
75.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
75.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
74.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
74.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
73.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
73.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
72.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
71.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
70.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
68.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
68.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
68.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
66.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
65.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
65.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
64.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
64.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
64.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
63.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
63.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
63.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
63.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
62.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
62.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
60.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
60.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
60.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
60.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
60.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
59.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
59.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
59.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
58.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
58.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
58.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
57.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
57.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
57.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
57.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
57.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
57.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
56.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
56.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
56.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
55.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
55.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
55.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
54.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
53.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
53.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
53.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
53.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
52.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
52.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
52.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
51.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
51.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
51.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
50.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
50.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
50.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
50.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
49.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
49.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
49.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
49.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
49.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
49.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
49.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
49.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
48.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
48.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
48.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
48.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
48.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
48.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
48.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
48.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
47.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
47.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
47.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
47.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
47.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
47.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
46.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
46.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
46.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
45.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
45.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
45.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
45.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
44.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
44.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
44.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
44.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
44.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
44.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
44.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
44.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
44.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
44.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
43.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
43.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
43.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
43.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
42.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
42.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
41.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
41.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
41.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
41.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
40.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
40.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
40.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
39.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
39.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
39.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
39.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
39.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
39.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
38.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
38.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
38.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
38.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
38.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
38.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
38.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
37.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
37.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
37.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
37.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
37.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
37.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
37.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
36.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
36.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
36.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
36.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
36.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
36.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
35.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
35.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
35.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
35.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
35.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
35.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
35.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
35.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
35.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
34.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
34.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
34.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
34.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
34.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
34.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
34.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
33.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
33.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
33.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
33.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
33.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
33.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
33.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
32.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
32.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
32.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
32.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
32.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
32.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
31.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
31.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
31.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
31.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
31.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
31.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
31.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
31.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
31.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
30.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
30.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
30.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
30.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
30.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
30.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
30.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
30.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
30.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
30.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
29.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
29.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
29.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
28.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
28.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
28.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
28.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
28.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
28.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
28.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
28.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
27.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
27.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
27.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
26.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
26.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
26.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
25.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
25.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
24.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
24.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
24.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
23.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
23.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
22.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
21.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
21.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
20.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
18.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
17.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDK2AP1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.5
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
111.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
100.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
94.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
94.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
92.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
87.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
78.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
76.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
76.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
75.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
71.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
69.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
67.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
64.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
61.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
60.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
60.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
59.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
59.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
59.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
56.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
55.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
55.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
53.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
53.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
53.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
52.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
52.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
52.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
50.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
50.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
47.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
45.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
44.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
44.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
43.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
43.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
43.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
43.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
43.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
41.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
41.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
40.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
39.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
39.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
38.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
38.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
38.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
38.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
38.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
37.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
37.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
36.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
36.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
36.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
36.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
35.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
35.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
34.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
34.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
34.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
34.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
33.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
33.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
33.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
33.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
33.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
32.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
32.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
32.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
30.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
30.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
30.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
30.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
29.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
29.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
29.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
28.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
28.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
28.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
28.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
24.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
23.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.1
545
Tumor
1.1
661
Tumor
1.1
211
Tumor
1.1
131
Tumor
1.0
983
Tumor
0.9
447
Tumor
0.9
497
Tumor
0.9
965
Tumor
0.9
411
Tumor
0.9
363
Tumor
0.8
743
Tumor
0.8
1025
Tumor
0.8
285
Tumor
0.8
455
Tumor
0.8
425
Tumor
0.8
943
Tumor
0.8
297
Tumor
0.8
1031
Tumor
0.8
427
Tumor
0.7
1013
Tumor
0.7
967
Tumor
0.7
463
Tumor
0.7
311
Tumor
0.7
517
Tumor
0.6
865
Tumor
0.6
977
Tumor
0.6
283
Tumor
0.6
917
Tumor
0.6
161
Tumor
0.6
533
Tumor
0.6
975
Tumor
0.6
284
Normal
0.6
951
Tumor
0.5
227
Tumor
0.5
881
Tumor
0.5
814
Normal
0.5
467
Tumor
0.5
228
Normal
0.5
271
Tumor
0.5
473
Tumor
0.5
357
Tumor
0.5
883
Tumor
0.5
351
Tumor
0.5
331
Tumor
0.5
523
Tumor
0.5
385
Tumor
0.5
123
Tumor
0.4
368
Normal
0.4
461
Tumor
0.4
375
Tumor
0.4
355
Tumor
0.4
395
Tumor
0.4
141
Tumor
0.4
525
Tumor
0.4
277
Tumor
0.4
471
Tumor
0.4
953
Tumor
0.4
913
Tumor
0.4
383
Tumor
0.3
1041
Tumor
0.3
937
Tumor
0.3
1015
Tumor
0.3
343
Tumor
0.3
647
Tumor
0.3
367
Tumor
0.3
535
Tumor
0.3
536
Normal
0.3
921
Tumor
0.3
524
Normal
0.3
1021
Tumor
0.3
737
Tumor
0.3
412
Normal
0.3
923
Tumor
0.3
493
Tumor
0.3
873
Tumor
0.3
721
Tumor
0.3
1043
Tumor
0.3
364
Normal
0.2
137
Tumor
0.2
818
Normal
0.2
313
Tumor
0.2
863
Tumor
0.2
537
Tumor
0.2
877
Tumor
0.2
724
Normal
0.2
861
Tumor
0.2
125
Tumor
0.2
487
Tumor
0.2
261
Tumor
0.2
685
Tumor
0.2
145
Tumor
0.2
963
Tumor
0.2
413
Tumor
0.2
697
Tumor
0.2
824
Normal
0.2
492
Normal
0.2
715
Tumor
0.2
286
Normal
0.2
488
Normal
0.2
573
Tumor
0.2
213
Tumor
0.2
365
Tumor
0.1
483
Tumor
0.1
813
Tumor
0.1
431
Tumor
0.1
445
Tumor
0.1
553
Tumor
0.1
415
Tumor
0.1
567
Tumor
0.1
421
Tumor
0.1
477
Tumor
0.1
857
Tumor
0.1
785
Tumor
0.1
878
Normal
0.1
858
Normal
0.1
713
Tumor
0.1
557
Tumor
0.1
185
Tumor
0.1
955
Tumor
0.1
874
Normal
0.1
981
Tumor
0.1
127
Tumor
0.1
135
Tumor
0.1
433
Tumor
0.1
341
Tumor
0.1
416
Normal
0.1
498
Normal
0.0
267
Tumor
0.0
695
Tumor
0.0
663
Tumor
0.0
538
Normal
0.0
443
Tumor
0.0
866
Normal
0.0
393
Tumor
0.0
554
Normal
0.0
423
Tumor
0.0
526
Normal
0.0
966
Normal
0.0
212
Normal
0.0
113
Tumor
0.0
451
Tumor
0.0
435
Tumor
0.0
868
Normal
0.0
187
Tumor
0.0
777
Tumor
-0.1
911
Tumor
-0.1
714
Normal
-0.1
491
Tumor
-0.1
778
Normal
-0.1
362
Normal
-0.1
952
Normal
-0.1
882
Normal
-0.1
327
Tumor
-0.1
387
Tumor
-0.1
862
Normal
-0.1
563
Tumor
-0.1
914
Normal
-0.1
112
Tumor
-0.1
864
Normal
-0.1
916
Normal
-0.1
727
Tumor
-0.1
146
Normal
-0.1
494
Normal
-0.1
434
Normal
-0.1
852
Normal
-0.1
147
Tumor
-0.1
816
Normal
-0.1
384
Normal
-0.1
696
Normal
-0.1
716
Normal
-0.1
356
Normal
-0.1
817
Tumor
-0.1
686
Normal
-0.1
1028
Normal
-0.1
958
Normal
-0.1
361
Tumor
-0.1
956
Normal
-0.1
223
Tumor
-0.2
546
Normal
-0.2
867
Tumor
-0.2
635
Tumor
-0.2
516
Normal
-0.2
448
Normal
-0.2
1044
Normal
-0.2
662
Normal
-0.2
515
Tumor
-0.2
968
Normal
-0.2
128
Normal
-0.2
224
Normal
-0.2
136
Normal
-0.2
478
Normal
-0.2
1045
Tumor
-0.2
534
Normal
-0.2
518
Normal
-0.2
221
Tumor
-0.2
314
Normal
-0.2
474
Normal
-0.2
366
Normal
-0.2
481
Tumor
-0.2
376
Normal
-0.2
142
Normal
-0.2
755
Tumor
-0.2
124
Normal
-0.2
527
Tumor
-0.3
915
Tumor
-0.3
126
Normal
-0.3
111
Normal
-0.3
257
Tumor
-0.3
982
Normal
-0.3
571
Tumor
-0.3
976
Normal
-0.3
964
Normal
-0.3
671
Tumor
-0.3
344
Normal
-0.3
925
Tumor
-0.3
1027
Tumor
-0.3
1026
Normal
-0.3
1016
Normal
-0.3
472
Normal
-0.3
171
Tumor
-0.3
391
Tumor
-0.3
114
Normal
-0.4
138
Normal
-0.4
484
Normal
-0.4
188
Normal
-0.4
954
Normal
-0.4
617
Tumor
-0.4
132
Normal
-0.4
722
Normal
-0.4
312
Normal
-0.4
342
Normal
-0.4
738
Normal
-0.4
944
Normal
-0.4
823
Tumor
-0.4
851
Tumor
-0.4
513
Tumor
-0.4
924
Normal
-0.4
938
Normal
-0.4
386
Normal
-0.4
698
Normal
-0.4
353
Tumor
-0.4
1032
Normal
-0.4
744
Normal
-0.4
1014
Normal
-0.4
912
Normal
-0.4
1046
Normal
-0.5
741
Tumor
-0.5
262
Normal
-0.5
436
Normal
-0.5
462
Normal
-0.5
466
Normal
-0.5
392
Normal
-0.5
918
Normal
-0.5
272
Normal
-0.5
328
Normal
-0.5
444
Normal
-0.5
786
Normal
-0.5
984
Normal
-0.5
641
Tumor
-0.5
574
Normal
-0.5
231
Tumor
-0.5
195
Tumor
-0.5
432
Normal
-0.5
258
Normal
-0.5
922
Normal
-0.5
465
Tumor
-0.5
268
Normal
-0.5
446
Normal
-0.6
558
Normal
-0.6
192
Normal
-0.6
728
Normal
-0.6
978
Normal
-0.6
884
Normal
-0.6
528
Normal
-0.6
1022
Normal
-0.6
926
Normal
-0.6
756
Normal
-0.6
426
Normal
-0.6
482
Normal
-0.6
746
Normal
-0.6
468
Normal
-0.6
396
Normal
-0.6
745
Tumor
-0.6
172
Normal
-0.6
514
Normal
-0.6
217
Tumor
-0.6
191
Tumor
-0.6
214
Normal
-0.6
218
Normal
-0.6
162
Normal
-0.7
1042
Normal
-0.7
352
Normal
-0.7
572
Normal
-0.7
298
Normal
-0.7
422
Normal
-0.7
148
Normal
-0.7
332
Normal
-0.7
278
Normal
-0.7
456
Normal
-0.7
464
Normal
-0.7
196
Normal
-0.7
723
Tumor
-0.8
742
Normal
-0.8
388
Normal
-0.8
354
Normal
-0.8
428
Normal
-0.8
424
Normal
-0.8
222
Normal
-0.8
452
Normal
-0.8
815
Tumor
-0.8
394
Normal
-0.9
665
Tumor
-0.9
186
Normal
-0.9
568
Normal
-0.9
564
Normal
-1.0
414
Normal
-1.0
358
Normal
-1.1
232
Normal
-1.1
664
Normal
-1.2
666
Normal
-1.3
642
Normal
-1.3
672
Normal
-1.4
615
Tumor
-1.4
628
Normal
-1.4
627
Tumor
-1.4
636
Normal
-1.4
616
Normal
-1.5
648
Normal
-1.5
618
Normal
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
