MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:350.1 nTPM
HPA Brain:177.6 nTPM
GTEx:350.1 nTPM
FANTOM5:293.8 Scaled Tags Per Million
Pig:72.1 nTPM
Mouse:170.3 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 177.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 158.1
2586 Male, age 75, left hemisphere 280.3
1870 Female, age 42, unknown 178.1
2828 Female, age 72, unknown 170.2
2019 Male, age 18, unknown 157.6
1833 Male, age 53, unknown 148.1
2666 Male, age 74, left hemisphere 145.3
1830 Male, age 51, unknown 143.1
2411 Female, age 72, unknown 132.0
1827 Male, age 72, unknown 122.8
2219 Male, age 76, both hemispheres 103.5
Dorsal raphe nucleus
nTPM: 177.6
2016 Female, age 72, unknown 224.1
1828 Male, age 53, unknown 188.2
2047 Male, age 72, unknown 176.0
2298 Female, age 72, unknown 161.8
2750 Male, age 76, both hemispheres 137.8
Inferior colliculus
nTPM: 159.5
2097 Female, age 72, unknown 174.9
1890 Male, age 53, unknown 166.6
1848 Female, age 42, unknown 163.1
2849 Male, age 72, unknown 133.6
Median raphe nucleus
nTPM: 127.1
2220 Male, age 76, midline 127.1
Periaquaductal grey, anterior
nTPM: 154.8
2502 Female, age 75, unknown 175.8
1947 Male, age 18, unknown 157.2
1795 Male, age 51, unknown 131.2
Periaquaductal grey, dorsal
nTPM: 161.5
2850 Male, age 76, both hemispheres 177.9
1831 Male, age 72, unknown 168.7
1840 Male, age 53, unknown 153.7
2464 Female, age 72, unknown 145.7
Periaquaductal grey, lateral
nTPM: 154.2
2053 Male, age 18, unknown 176.4
2140 Male, age 76, both hemispheres 164.9
2272 Male, age 74, both hemispheres 121.3
Pretectal area
nTPM: 144.4
2273 Male, age 74, both hemispheres 163.1
2407 Male, age 75, both hemispheres 160.2
1815 Male, age 53, unknown 157.9
1817 Female, age 42, unknown 152.0
1944 Female, age 72, unknown 143.1
2316 Male, age 76, right hemisphere 142.3
2224 Female, age 72, unknown 141.9
2667 Female, age 75, unknown 139.2
2825 Male, age 18, unknown 131.5
1816 Male, age 51, unknown 128.9
2007 Male, age 72, unknown 128.6
Red nucleus
nTPM: 166.9
2769 Male, age 72, unknown 190.9
2227 Male, age 72, unknown 190.2
2503 Female, age 72, unknown 187.4
1821 Female, age 72, unknown 186.4
1865 Male, age 51, unknown 183.6
1954 Female, age 42, unknown 182.9
1904 Male, age 53, unknown 172.3
2584 Male, age 75, left hemisphere 159.3
2785 Male, age 18, unknown 155.9
2725 Female, age 75, unknown 139.8
2823 Male, age 76, right hemisphere 135.3
2588 Male, age 74, left hemisphere 119.0
Substantia nigra
nTPM: 154.3
2699 Male, age 18, unknown 202.8
2583 Male, age 75, right hemisphere 195.0
1851 Male, age 51, unknown 172.9
1916 Female, age 42, unknown 153.5
1889 Female, age 72, unknown 145.5
1941 Male, age 53, unknown 145.5
2590 Female, age 75, unknown 141.2
2409 Female, age 72, unknown 134.6
2241 Male, age 72, unknown 128.2
2665 Male, age 74, both hemispheres 123.3
Superior colliculus
nTPM: 159.2
1995 Male, age 72, unknown 217.8
2664 Male, age 75, both hemispheres 206.5
1913 Female, age 42, unknown 181.2
2668 Female, age 75, unknown 178.9
2587 Male, age 74, left hemisphere 157.3
1839 Male, age 51, unknown 155.7
2087 Female, age 72, unknown 141.7
1796 Male, age 53, unknown 126.4
1895 Male, age 76, right hemisphere 116.5
2261 Male, age 18, unknown 110.5
Ventral tegmental area
nTPM: 160.4
1942 Male, age 51, unknown 176.1
2021 Male, age 53, unknown 172.1
1915 Female, age 42, unknown 168.2
2223 Female, age 72, unknown 162.1
2410 Female, age 72, unknown 156.1
2218 Male, age 76, both hemispheres 127.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 350.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 350.1
Samples: 139

Max nTPM: 733.2
Min nTPM: 147.7
Std nTPM: 109.7
Median nTPM: 324.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 733.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 707.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 641.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 625.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 612.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 586.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 549.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 544.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 540.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 526.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 522.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 293.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 293.8
FF:10158-103A5 76 years, female 293.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 72.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.4
Samples: 4

Max nTPM: 82.2
Min nTPM: 59.2
Sample A Female 82.2
Sample B Female 59.2
Sample C Male 59.6
Sample D Male 64.5
Midbrain
nTPM: 72.2
Samples: 4

Max nTPM: 131.1
Min nTPM: 44.1
Sample A Female 131.1
Sample B Female 61.2
Sample C Male 52.2
Sample D Male 44.1
Periaqueductal gray
nTPM: 55.1
Samples: 3

Max nTPM: 58.3
Min nTPM: 50.6
Sample B Female 56.3
Sample C Male 58.3
Sample D Male 50.6
Superior colliculi
nTPM: 62.3
Samples: 4

Max nTPM: 79.2
Min nTPM: 47.1
Sample A Female 79.2
Sample B Female 47.1
Sample C Male 66.0
Sample D Male 56.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 170.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 170.3
Samples: 4

Max nTPM: 178.9
Min nTPM: 158.6
Sample A Male 178.9
Sample B Male 167.4
Sample C Female 158.6
Sample D Female 176.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
633273 Antisense, RP_040907_02_C08, Mouse strain C57BL/6J (56 days, male) 1.8

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