MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.3 nTPM
HPA Brain:31.9 nTPM
GTEx:10.3 nTPM
FANTOM5:57.8 Scaled Tags Per Million
Pig:16.9 nTPM
Mouse:14.2 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 31.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.0
2019 Male, age 18, unknown 44.7
2219 Male, age 76, both hemispheres 38.0
2411 Female, age 72, unknown 30.2
2586 Male, age 75, left hemisphere 29.1
1827 Male, age 72, unknown 28.5
2666 Male, age 74, left hemisphere 27.4
1870 Female, age 42, unknown 26.4
1833 Male, age 53, unknown 26.3
1830 Male, age 51, unknown 25.2
2828 Female, age 72, unknown 24.6
Dorsal raphe nucleus
nTPM: 24.4
1828 Male, age 53, unknown 29.2
2750 Male, age 76, both hemispheres 26.5
2298 Female, age 72, unknown 25.4
2047 Male, age 72, unknown 22.9
2016 Female, age 72, unknown 18.1
Inferior colliculus
nTPM: 24.4
2097 Female, age 72, unknown 26.3
1890 Male, age 53, unknown 25.1
1848 Female, age 42, unknown 25.0
2849 Male, age 72, unknown 21.4
Median raphe nucleus
nTPM: 23.2
2220 Male, age 76, midline 23.2
Periaquaductal grey, anterior
nTPM: 23.5
2502 Female, age 75, unknown 26.7
1795 Male, age 51, unknown 23.5
1947 Male, age 18, unknown 20.3
Periaquaductal grey, dorsal
nTPM: 20.1
1831 Male, age 72, unknown 24.2
2464 Female, age 72, unknown 22.4
1840 Male, age 53, unknown 19.3
2850 Male, age 76, both hemispheres 14.5
Periaquaductal grey, lateral
nTPM: 19.3
2053 Male, age 18, unknown 22.1
2272 Male, age 74, both hemispheres 20.5
2140 Male, age 76, both hemispheres 15.3
Pretectal area
nTPM: 31.9
2007 Male, age 72, unknown 46.4
1944 Female, age 72, unknown 45.9
1816 Male, age 51, unknown 45.5
1817 Female, age 42, unknown 41.3
1815 Male, age 53, unknown 38.1
2407 Male, age 75, both hemispheres 25.9
2224 Female, age 72, unknown 24.8
2316 Male, age 76, right hemisphere 23.2
2667 Female, age 75, unknown 21.8
2825 Male, age 18, unknown 19.6
2273 Male, age 74, both hemispheres 18.8
Red nucleus
nTPM: 29.6
2785 Male, age 18, unknown 41.7
2588 Male, age 74, left hemisphere 36.4
2503 Female, age 72, unknown 31.1
1821 Female, age 72, unknown 30.2
1954 Female, age 42, unknown 28.9
1904 Male, age 53, unknown 28.7
2725 Female, age 75, unknown 28.7
1865 Male, age 51, unknown 27.8
2584 Male, age 75, left hemisphere 27.7
2823 Male, age 76, right hemisphere 24.7
2227 Male, age 72, unknown 24.5
2769 Male, age 72, unknown 24.3
Substantia nigra
nTPM: 25.9
1889 Female, age 72, unknown 35.5
2409 Female, age 72, unknown 29.6
2583 Male, age 75, right hemisphere 29.2
1916 Female, age 42, unknown 28.2
1851 Male, age 51, unknown 26.7
2590 Female, age 75, unknown 25.0
2241 Male, age 72, unknown 24.5
2665 Male, age 74, both hemispheres 23.5
1941 Male, age 53, unknown 20.5
2699 Male, age 18, unknown 16.2
Superior colliculus
nTPM: 29.3
2087 Female, age 72, unknown 36.8
2668 Female, age 75, unknown 36.2
2261 Male, age 18, unknown 31.7
1913 Female, age 42, unknown 31.2
1895 Male, age 76, right hemisphere 30.3
1995 Male, age 72, unknown 28.2
1796 Male, age 53, unknown 27.1
2587 Male, age 74, left hemisphere 27.1
1839 Male, age 51, unknown 24.5
2664 Male, age 75, both hemispheres 20.0
Ventral tegmental area
nTPM: 26.5
2410 Female, age 72, unknown 31.6
2218 Male, age 76, both hemispheres 29.1
1915 Female, age 42, unknown 26.4
2021 Male, age 53, unknown 25.7
1942 Male, age 51, unknown 23.8
2223 Female, age 72, unknown 22.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.3
Samples: 139

Max nTPM: 22.9
Min nTPM: 2.5
Std nTPM: 3.6
Median nTPM: 9.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 22.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 20.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 19.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 18.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 18.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 17.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 16.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 16.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 16.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 15.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 15.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 57.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.8
FF:10158-103A5 76 years, female 57.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.7
Samples: 4

Max nTPM: 16.0
Min nTPM: 9.0
Sample A Female 16.0
Sample B Female 10.9
Sample C Male 15.0
Sample D Male 9.0
Midbrain
nTPM: 15.5
Samples: 4

Max nTPM: 24.2
Min nTPM: 9.5
Sample A Female 9.5
Sample B Female 11.4
Sample C Male 24.2
Sample D Male 16.8
Periaqueductal gray
nTPM: 10.8
Samples: 3

Max nTPM: 11.6
Min nTPM: 9.5
Sample B Female 11.6
Sample C Male 11.4
Sample D Male 9.5
Superior colliculi
nTPM: 16.9
Samples: 4

Max nTPM: 21.2
Min nTPM: 14.6
Sample A Female 15.3
Sample B Female 16.5
Sample C Male 21.2
Sample D Male 14.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 15.1
Min nTPM: 12.6
Sample A Male 12.6
Sample B Male 14.1
Sample C Female 14.8
Sample D Female 15.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
71809259 Antisense, RP_051005_01_G10, Mouse strain C57BL/6J (56 days, male) 0.4

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