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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUP98 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
40.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
36.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
34.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
30.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
25.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUP98 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
231
Samples
Sample
Description
TPM
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
0.8
473
Tumor
0.8
1021
Tumor
0.8
817
Tumor
0.8
285
Tumor
0.7
951
Tumor
0.7
743
Tumor
0.7
967
Tumor
0.6
171
Tumor
0.6
685
Tumor
0.6
1041
Tumor
0.6
715
Tumor
0.6
665
Tumor
0.6
425
Tumor
0.5
123
Tumor
0.5
1031
Tumor
0.5
724
Normal
0.5
1025
Tumor
0.5
367
Tumor
0.5
671
Tumor
0.5
517
Tumor
0.5
535
Tumor
0.5
221
Tumor
0.5
497
Tumor
0.5
131
Tumor
0.4
211
Tumor
0.4
815
Tumor
0.4
877
Tumor
0.4
411
Tumor
0.4
977
Tumor
0.4
413
Tumor
0.4
227
Tumor
0.4
553
Tumor
0.4
363
Tumor
0.4
483
Tumor
0.4
737
Tumor
0.4
545
Tumor
0.4
925
Tumor
0.4
523
Tumor
0.4
391
Tumor
0.4
351
Tumor
0.4
573
Tumor
0.4
395
Tumor
0.3
331
Tumor
0.3
647
Tumor
0.3
937
Tumor
0.3
957
Tumor
0.3
385
Tumor
0.3
1013
Tumor
0.3
921
Tumor
0.3
883
Tumor
0.3
975
Tumor
0.3
865
Tumor
0.3
465
Tumor
0.3
963
Tumor
0.3
271
Tumor
0.3
427
Tumor
0.3
277
Tumor
0.3
467
Tumor
0.3
563
Tumor
0.3
881
Tumor
0.3
727
Tumor
0.3
695
Tumor
0.3
983
Tumor
0.3
661
Tumor
0.3
487
Tumor
0.3
463
Tumor
0.3
375
Tumor
0.3
343
Tumor
0.2
383
Tumor
0.2
477
Tumor
0.2
533
Tumor
0.2
923
Tumor
0.2
355
Tumor
0.2
641
Tumor
0.2
525
Tumor
0.2
443
Tumor
0.2
231
Tumor
0.2
537
Tumor
0.2
1015
Tumor
0.2
915
Tumor
0.2
493
Tumor
0.2
635
Tumor
0.2
741
Tumor
0.2
913
Tumor
0.2
471
Tumor
0.2
461
Tumor
0.2
943
Tumor
0.2
777
Tumor
0.2
112
Tumor
0.2
185
Tumor
0.2
267
Tumor
0.2
861
Tumor
0.2
515
Tumor
0.2
663
Tumor
0.2
127
Tumor
0.2
1043
Tumor
0.2
451
Tumor
0.1
421
Tumor
0.1
1027
Tumor
0.1
744
Normal
0.1
455
Tumor
0.1
557
Tumor
0.1
433
Tumor
0.1
431
Tumor
0.1
867
Tumor
0.1
365
Tumor
0.1
297
Tumor
0.1
785
Tumor
0.1
491
Tumor
0.1
384
Normal
0.1
615
Tumor
0.1
912
Normal
0.1
984
Normal
0.1
313
Tumor
0.1
1045
Tumor
0.1
524
Normal
0.1
125
Tumor
0.1
341
Tumor
0.1
527
Tumor
0.1
498
Normal
0.1
283
Tumor
0.1
851
Tumor
0.1
344
Normal
0.1
954
Normal
0.1
447
Tumor
0.1
217
Tumor
0.0
911
Tumor
0.0
492
Normal
0.0
113
Tumor
0.0
187
Tumor
0.0
478
Normal
0.0
857
Tumor
0.0
713
Tumor
0.0
376
Normal
0.0
213
Tumor
0.0
567
Tumor
0.0
672
Normal
0.0
257
Tumor
0.0
953
Tumor
0.0
342
Normal
0.0
1014
Normal
0.0
261
Tumor
0.0
814
Normal
0.0
481
Tumor
0.0
482
Normal
0.0
686
Normal
0.0
571
Tumor
0.0
141
Tumor
0.0
755
Tumor
0.0
538
Normal
0.0
882
Normal
0.0
697
Tumor
0.0
135
Tumor
0.0
922
Normal
0.0
813
Tumor
0.0
878
Normal
0.0
924
Normal
0.0
536
Normal
0.0
917
Tumor
0.0
976
Normal
0.0
484
Normal
0.0
435
Tumor
0.0
534
Normal
0.0
352
Normal
0.0
488
Normal
0.0
353
Tumor
0.0
873
Tumor
0.0
145
Tumor
0.0
516
Normal
0.0
232
Normal
0.0
462
Normal
0.0
327
Tumor
0.0
981
Tumor
0.0
472
Normal
0.0
926
Normal
-0.1
223
Tumor
-0.1
311
Tumor
-0.1
195
Tumor
-0.1
968
Normal
-0.1
361
Tumor
-0.1
756
Normal
-0.1
884
Normal
-0.1
823
Tumor
-0.1
554
Normal
-0.1
392
Normal
-0.1
137
Tumor
-0.1
914
Normal
-0.1
627
Tumor
-0.1
746
Normal
-0.1
958
Normal
-0.1
268
Normal
-0.1
918
Normal
-0.1
664
Normal
-0.1
354
Normal
-0.1
964
Normal
-0.1
1016
Normal
-0.1
192
Normal
-0.1
456
Normal
-0.1
147
Tumor
-0.1
714
Normal
-0.1
546
Normal
-0.1
448
Normal
-0.1
874
Normal
-0.1
474
Normal
-0.1
742
Normal
-0.1
494
Normal
-0.1
513
Tumor
-0.1
412
Normal
-0.1
258
Normal
-0.1
415
Tumor
-0.1
858
Normal
-0.1
696
Normal
-0.1
272
Normal
-0.1
666
Normal
-0.1
394
Normal
-0.1
161
Tumor
-0.1
396
Normal
-0.1
1046
Normal
-0.1
284
Normal
-0.1
124
Normal
-0.1
528
Normal
-0.1
426
Normal
-0.1
778
Normal
-0.1
142
Normal
-0.1
526
Normal
-0.1
518
Normal
-0.1
863
Tumor
-0.1
422
Normal
-0.1
982
Normal
-0.1
716
Normal
-0.1
262
Normal
-0.1
114
Normal
-0.1
466
Normal
-0.1
824
Normal
-0.1
786
Normal
-0.1
368
Normal
-0.1
126
Normal
-0.1
721
Tumor
-0.1
864
Normal
-0.1
617
Tumor
-0.1
172
Normal
-0.1
978
Normal
-0.1
966
Normal
-0.1
952
Normal
-0.1
818
Normal
-0.1
738
Normal
-0.1
364
Normal
-0.1
698
Normal
-0.1
446
Normal
-0.1
636
Normal
-0.1
728
Normal
-0.1
387
Tumor
-0.1
868
Normal
-0.1
434
Normal
-0.1
162
Normal
-0.1
146
Normal
-0.1
416
Normal
-0.1
212
Normal
-0.1
424
Normal
-0.1
386
Normal
-0.2
1028
Normal
-0.2
866
Normal
-0.2
414
Normal
-0.2
436
Normal
-0.2
916
Normal
-0.2
362
Normal
-0.2
722
Normal
-0.2
312
Normal
-0.2
138
Normal
-0.2
393
Tumor
-0.2
1032
Normal
-0.2
366
Normal
-0.2
648
Normal
-0.2
191
Tumor
-0.2
111
Normal
-0.2
745
Tumor
-0.2
514
Normal
-0.2
444
Normal
-0.2
298
Normal
-0.2
358
Normal
-0.2
452
Normal
-0.2
188
Normal
-0.2
955
Tumor
-0.2
662
Normal
-0.2
464
Normal
-0.2
1044
Normal
-0.2
574
Normal
-0.2
428
Normal
-0.2
618
Normal
-0.2
224
Normal
-0.2
938
Normal
-0.2
862
Normal
-0.2
128
Normal
-0.2
642
Normal
-0.2
186
Normal
-0.2
944
Normal
-0.2
388
Normal
-0.2
228
Normal
-0.2
1042
Normal
-0.2
723
Tumor
-0.2
1026
Normal
-0.2
956
Normal
-0.2
816
Normal
-0.2
148
Normal
-0.2
432
Normal
-0.2
328
Normal
-0.2
423
Tumor
-0.2
278
Normal
-0.2
628
Normal
-0.2
568
Normal
-0.2
1022
Normal
-0.2
468
Normal
-0.2
357
Tumor
-0.2
196
Normal
-0.2
222
Normal
-0.2
616
Normal
-0.2
356
Normal
-0.2
314
Normal
-0.2
852
Normal
-0.2
445
Tumor
-0.2
564
Normal
-0.3
132
Normal
-0.3
214
Normal
-0.3
286
Normal
-0.3
136
Normal
-0.3
218
Normal
-0.3
332
Normal
-0.3
558
Normal
-0.3
572
Normal
-0.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.