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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC1A2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
107.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
103.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
97.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
91.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
82.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
72.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
68.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
68.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
67.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
65.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
64.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
62.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
56.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
54.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
52.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
52.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
52.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
50.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
48.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
48.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
47.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
47.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
45.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
42.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
41.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
40.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
39.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
39.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
39.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
38.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
37.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
37.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
37.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
36.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
35.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
35.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
35.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
32.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
31.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
31.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
30.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
28.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
27.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
27.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
27.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
27.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
25.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
25.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
24.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
23.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
19.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC1A2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.5
Number of samples
231
Samples
Sample
Description
TPM
DO48719
0 years, male, NA, stage:2, alive, 690 days
86.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
77.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
76.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
71.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
60.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
60.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
53.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
44.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
43.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
43.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
40.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
37.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
34.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
32.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
31.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
31.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
31.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
31.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
30.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
30.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
30.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
28.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
27.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
2.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
2.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
1.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
227
Tumor
3.6
171
Tumor
2.8
981
Tumor
2.2
261
Tumor
2.1
861
Tumor
2.1
911
Tumor
2.0
741
Tumor
1.8
123
Tumor
1.8
363
Tumor
1.8
571
Tumor
1.8
451
Tumor
1.7
867
Tumor
1.7
977
Tumor
1.5
915
Tumor
1.4
665
Tumor
1.3
724
Normal
1.3
482
Normal
1.0
474
Normal
1.0
488
Normal
1.0
114
Normal
1.0
423
Tumor
1.0
1041
Tumor
1.0
231
Tumor
1.0
685
Tumor
0.9
967
Tumor
0.9
698
Normal
0.9
388
Normal
0.9
472
Normal
0.9
342
Normal
0.9
695
Tumor
0.8
722
Normal
0.8
714
Normal
0.8
477
Tumor
0.8
172
Normal
0.8
1014
Normal
0.8
128
Normal
0.8
686
Normal
0.8
568
Normal
0.8
715
Tumor
0.8
965
Tumor
0.7
232
Normal
0.7
356
Normal
0.7
473
Tumor
0.7
468
Normal
0.7
466
Normal
0.7
696
Normal
0.7
424
Normal
0.7
448
Normal
0.7
362
Normal
0.6
217
Tumor
0.6
328
Normal
0.6
353
Tumor
0.6
462
Normal
0.6
138
Normal
0.6
618
Normal
0.6
914
Normal
0.6
465
Tumor
0.6
285
Tumor
0.6
192
Normal
0.6
976
Normal
0.6
572
Normal
0.6
358
Normal
0.6
366
Normal
0.6
228
Normal
0.5
384
Normal
0.5
564
Normal
0.5
1046
Normal
0.5
922
Normal
0.5
554
Normal
0.5
428
Normal
0.5
481
Tumor
0.5
494
Normal
0.5
124
Normal
0.5
142
Normal
0.4
546
Normal
0.4
478
Normal
0.4
498
Normal
0.4
642
Normal
0.4
1016
Normal
0.4
391
Tumor
0.4
484
Normal
0.4
364
Normal
0.4
127
Tumor
0.4
354
Normal
0.4
132
Normal
0.4
558
Normal
0.4
396
Normal
0.4
162
Normal
0.4
713
Tumor
0.4
258
Normal
0.3
344
Normal
0.3
212
Normal
0.3
214
Normal
0.3
452
Normal
0.3
557
Tumor
0.3
874
Normal
0.3
222
Normal
0.3
1042
Normal
0.3
636
Normal
0.3
422
Normal
0.3
431
Tumor
0.3
191
Tumor
0.2
426
Normal
0.2
394
Normal
0.2
868
Normal
0.2
553
Tumor
0.2
286
Normal
0.2
464
Normal
0.2
984
Normal
0.2
1028
Normal
0.2
526
Normal
0.2
461
Tumor
0.2
921
Tumor
0.2
877
Tumor
0.2
742
Normal
0.2
1032
Normal
0.2
187
Tumor
0.2
964
Normal
0.2
411
Tumor
0.2
361
Tumor
0.2
534
Normal
0.2
392
Normal
0.2
196
Normal
0.2
882
Normal
0.2
1015
Tumor
0.2
648
Normal
0.2
412
Normal
0.1
968
Normal
0.1
111
Normal
0.1
136
Normal
0.1
416
Normal
0.1
616
Normal
0.1
866
Normal
0.1
186
Normal
0.1
376
Normal
0.1
924
Normal
0.1
738
Normal
0.1
746
Normal
0.1
221
Tumor
0.1
944
Normal
0.1
1025
Tumor
0.1
145
Tumor
0.1
963
Tumor
0.1
938
Normal
0.1
628
Normal
0.1
268
Normal
0.1
1026
Normal
0.1
878
Normal
0.0
1022
Normal
0.0
386
Normal
0.0
161
Tumor
0.0
456
Normal
0.0
352
Normal
0.0
262
Normal
0.0
224
Normal
0.0
926
Normal
0.0
126
Normal
0.0
954
Normal
0.0
883
Tumor
0.0
483
Tumor
0.0
697
Tumor
0.0
574
Normal
0.0
864
Normal
0.0
223
Tumor
-0.1
444
Normal
-0.1
1031
Tumor
-0.1
958
Normal
-0.1
213
Tumor
-0.1
982
Normal
-0.1
435
Tumor
-0.1
662
Normal
-0.1
755
Tumor
-0.1
881
Tumor
-0.1
1044
Normal
-0.1
756
Normal
-0.1
446
Normal
-0.1
195
Tumor
-0.1
1027
Tumor
-0.1
785
Tumor
-0.1
272
Normal
-0.1
188
Normal
-0.1
744
Normal
-0.1
615
Tumor
-0.1
492
Normal
-0.1
723
Tumor
-0.1
778
Normal
-0.2
923
Tumor
-0.2
148
Normal
-0.2
538
Normal
-0.2
146
Normal
-0.2
185
Tumor
-0.2
966
Normal
-0.2
368
Normal
-0.2
284
Normal
-0.2
916
Normal
-0.2
536
Normal
-0.2
1043
Tumor
-0.2
414
Normal
-0.2
858
Normal
-0.3
516
Normal
-0.3
267
Tumor
-0.3
135
Tumor
-0.3
365
Tumor
-0.3
436
Normal
-0.3
514
Normal
-0.3
487
Tumor
-0.3
956
Normal
-0.3
471
Tumor
-0.3
745
Tumor
-0.3
814
Normal
-0.3
743
Tumor
-0.3
524
Normal
-0.3
518
Normal
-0.3
327
Tumor
-0.3
728
Normal
-0.3
493
Tumor
-0.3
218
Normal
-0.3
1021
Tumor
-0.3
978
Normal
-0.4
137
Tumor
-0.4
447
Tumor
-0.4
427
Tumor
-0.4
918
Normal
-0.4
627
Tumor
-0.4
434
Normal
-0.4
917
Tumor
-0.4
1045
Tumor
-0.4
141
Tumor
-0.5
813
Tumor
-0.5
271
Tumor
-0.5
432
Normal
-0.5
975
Tumor
-0.5
113
Tumor
-0.5
884
Normal
-0.5
415
Tumor
-0.5
862
Normal
-0.5
873
Tumor
-0.5
537
Tumor
-0.5
852
Normal
-0.5
563
Tumor
-0.6
257
Tumor
-0.6
355
Tumor
-0.6
857
Tumor
-0.6
777
Tumor
-0.6
517
Tumor
-0.6
824
Normal
-0.6
421
Tumor
-0.6
851
Tumor
-0.6
393
Tumor
-0.6
815
Tumor
-0.7
786
Normal
-0.7
912
Normal
-0.7
387
Tumor
-0.7
817
Tumor
-0.7
913
Tumor
-0.7
925
Tumor
-0.7
647
Tumor
-0.7
957
Tumor
-0.7
125
Tumor
-0.7
818
Normal
-0.7
357
Tumor
-0.7
816
Normal
-0.7
727
Tumor
-0.7
672
Normal
-0.7
716
Normal
-0.8
1013
Tumor
-0.8
425
Tumor
-0.8
367
Tumor
-0.8
943
Tumor
-0.8
433
Tumor
-0.8
641
Tumor
-0.8
211
Tumor
-0.8
721
Tumor
-0.8
343
Tumor
-0.8
664
Normal
-0.9
983
Tumor
-0.9
497
Tumor
-0.9
823
Tumor
-0.9
567
Tumor
-0.9
463
Tumor
-0.9
952
Normal
-0.9
395
Tumor
-0.9
535
Tumor
-0.9
491
Tumor
-0.9
131
Tumor
-0.9
341
Tumor
-0.9
351
Tumor
-1.0
383
Tumor
-1.0
413
Tumor
-1.0
147
Tumor
-1.0
443
Tumor
-1.0
385
Tumor
-1.0
467
Tumor
-1.1
513
Tumor
-1.2
955
Tumor
-1.2
283
Tumor
-1.2
112
Tumor
-1.2
937
Tumor
-1.3
375
Tumor
-1.3
617
Tumor
-1.3
515
Tumor
-1.3
663
Tumor
-1.3
445
Tumor
-1.4
528
Normal
-1.5
953
Tumor
-1.5
533
Tumor
-1.5
666
Normal
-1.5
573
Tumor
-1.5
951
Tumor
-1.6
455
Tumor
-1.6
525
Tumor
-1.6
865
Tumor
-1.6
635
Tumor
-1.6
737
Tumor
-2.0
671
Tumor
-2.0
863
Tumor
-2.0
527
Tumor
-2.4
523
Tumor
-2.4
661
Tumor
-2.5
545
Tumor
-3.1
277
Tumor
N/A
278
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
