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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MS4A6A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
177.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
115.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
72.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
62.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
58.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
56.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
47.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
42.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
41.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
41.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
37.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
36.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
33.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
33.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
31.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
26.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
21.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MS4A6A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.6
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
167.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
116.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
114.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
114.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
109.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
108.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
108.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
106.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
102.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
94.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
92.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
90.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
88.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
86.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
85.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
83.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
82.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
82.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
76.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
72.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
70.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
63.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
62.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
61.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
60.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
59.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
58.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
57.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
57.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
55.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
54.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
53.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
52.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
51.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
50.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
50.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
50.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
49.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
49.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
48.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
48.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
47.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
45.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
44.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
43.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
43.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
43.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
42.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
42.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
42.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
41.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
40.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
40.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
38.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
38.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
38.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
37.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
37.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
37.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
36.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
36.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
35.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
32.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
30.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
30.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
30.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
28.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
28.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
27.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
25.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
21.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
283
Tumor
1.4
498
Normal
1.0
1042
Normal
1.0
434
Normal
0.9
396
Normal
0.9
391
Tumor
0.9
724
Normal
0.9
467
Tumor
0.9
861
Tumor
0.9
1022
Normal
0.9
311
Tumor
0.9
211
Tumor
0.9
1028
Normal
0.9
851
Tumor
0.8
343
Tumor
0.8
538
Normal
0.8
492
Normal
0.7
1032
Normal
0.7
268
Normal
0.7
636
Normal
0.7
262
Normal
0.7
917
Tumor
0.7
468
Normal
0.7
661
Tumor
0.7
482
Normal
0.7
978
Normal
0.6
478
Normal
0.6
628
Normal
0.6
231
Tumor
0.6
914
Normal
0.6
918
Normal
0.6
388
Normal
0.6
224
Normal
0.6
557
Tumor
0.6
516
Normal
0.6
362
Normal
0.5
696
Normal
0.5
138
Normal
0.5
124
Normal
0.5
954
Normal
0.5
867
Tumor
0.5
491
Tumor
0.5
617
Tumor
0.5
232
Normal
0.5
456
Normal
0.5
367
Tumor
0.5
864
Normal
0.5
368
Normal
0.5
1026
Normal
0.5
1016
Normal
0.5
421
Tumor
0.5
213
Tumor
0.5
286
Normal
0.5
1015
Tumor
0.5
524
Normal
0.4
536
Normal
0.4
984
Normal
0.4
546
Normal
0.4
142
Normal
0.4
284
Normal
0.4
916
Normal
0.4
366
Normal
0.4
968
Normal
0.4
217
Tumor
0.4
466
Normal
0.4
686
Normal
0.4
452
Normal
0.4
642
Normal
0.4
925
Tumor
0.4
558
Normal
0.4
128
Normal
0.4
464
Normal
0.4
272
Normal
0.3
352
Normal
0.3
742
Normal
0.3
258
Normal
0.3
212
Normal
0.3
422
Normal
0.3
563
Tumor
0.3
461
Tumor
0.3
494
Normal
0.3
823
Tumor
0.3
392
Normal
0.3
386
Normal
0.3
448
Normal
0.3
384
Normal
0.3
444
Normal
0.3
474
Normal
0.3
716
Normal
0.3
528
Normal
0.3
966
Normal
0.3
424
Normal
0.3
943
Tumor
0.3
518
Normal
0.3
394
Normal
0.3
537
Tumor
0.3
671
Tumor
0.3
554
Normal
0.3
111
Normal
0.3
913
Tumor
0.3
462
Normal
0.3
956
Normal
0.3
278
Normal
0.3
228
Normal
0.3
862
Normal
0.3
564
Normal
0.2
172
Normal
0.2
358
Normal
0.2
534
Normal
0.2
493
Tumor
0.2
884
Normal
0.2
863
Tumor
0.2
922
Normal
0.2
877
Tumor
0.2
148
Normal
0.2
574
Normal
0.2
944
Normal
0.2
938
Normal
0.2
924
Normal
0.2
728
Normal
0.2
186
Normal
0.2
852
Normal
0.2
958
Normal
0.2
866
Normal
0.2
481
Tumor
0.2
218
Normal
0.2
964
Normal
0.2
955
Tumor
0.2
395
Tumor
0.2
514
Normal
0.2
618
Normal
0.2
976
Normal
0.2
912
Normal
0.2
195
Tumor
0.2
114
Normal
0.2
426
Normal
0.2
484
Normal
0.2
414
Normal
0.2
433
Tumor
0.2
526
Normal
0.2
738
Normal
0.2
756
Normal
0.2
1045
Tumor
0.2
882
Normal
0.2
874
Normal
0.2
786
Normal
0.2
412
Normal
0.1
314
Normal
0.1
387
Tumor
0.1
816
Normal
0.1
383
Tumor
0.1
553
Tumor
0.1
188
Normal
0.1
413
Tumor
0.1
1031
Tumor
0.1
1014
Normal
0.1
365
Tumor
0.1
146
Normal
0.1
376
Normal
0.1
162
Normal
0.1
878
Normal
0.1
714
Normal
0.1
344
Normal
0.1
627
Tumor
0.1
354
Normal
0.1
665
Tumor
0.1
488
Normal
0.1
824
Normal
0.1
525
Tumor
0.1
572
Normal
0.1
535
Tumor
0.1
451
Tumor
0.1
573
Tumor
0.1
332
Normal
0.1
727
Tumor
0.1
214
Normal
0.1
778
Normal
0.1
818
Normal
0.1
926
Normal
0.1
472
Normal
0.0
648
Normal
0.0
125
Tumor
0.0
814
Normal
0.0
136
Normal
0.0
664
Normal
0.0
982
Normal
0.0
145
Tumor
0.0
722
Normal
0.0
447
Tumor
0.0
261
Tumor
0.0
568
Normal
0.0
355
Tumor
0.0
298
Normal
0.0
432
Normal
0.0
187
Tumor
0.0
385
Tumor
0.0
672
Normal
0.0
446
Normal
0.0
815
Tumor
0.0
356
Normal
0.0
483
Tumor
0.0
616
Normal
0.0
662
Normal
0.0
222
Normal
0.0
192
Normal
0.0
715
Tumor
0.0
515
Tumor
0.0
953
Tumor
0.0
1044
Normal
0.0
312
Normal
0.0
915
Tumor
0.0
1046
Normal
-0.1
411
Tumor
-0.1
952
Normal
-0.1
817
Tumor
-0.1
363
Tumor
-0.1
1041
Tumor
-0.1
868
Normal
-0.1
185
Tumor
-0.1
141
Tumor
-0.1
545
Tumor
-0.1
113
Tumor
-0.1
785
Tumor
-0.1
436
Normal
-0.1
641
Tumor
-0.1
865
Tumor
-0.1
328
Normal
-0.1
147
Tumor
-0.1
353
Tumor
-0.1
132
Normal
-0.1
297
Tumor
-0.1
375
Tumor
-0.1
416
Normal
-0.2
858
Normal
-0.2
881
Tumor
-0.2
223
Tumor
-0.2
423
Tumor
-0.2
126
Normal
-0.2
685
Tumor
-0.2
257
Tumor
-0.2
415
Tumor
-0.2
883
Tumor
-0.2
533
Tumor
-0.2
721
Tumor
-0.2
517
Tumor
-0.2
428
Normal
-0.2
285
Tumor
-0.2
513
Tumor
-0.2
221
Tumor
-0.2
487
Tumor
-0.2
267
Tumor
-0.2
127
Tumor
-0.2
497
Tumor
-0.2
963
Tumor
-0.3
342
Normal
-0.3
983
Tumor
-0.3
393
Tumor
-0.3
271
Tumor
-0.3
698
Normal
-0.3
327
Tumor
-0.3
857
Tumor
-0.3
663
Tumor
-0.3
1021
Tumor
-0.3
191
Tumor
-0.3
923
Tumor
-0.3
723
Tumor
-0.3
471
Tumor
-0.3
161
Tumor
-0.3
477
Tumor
-0.3
196
Normal
-0.3
331
Tumor
-0.3
171
Tumor
-0.3
697
Tumor
-0.3
746
Normal
-0.3
364
Normal
-0.3
921
Tumor
-0.3
615
Tumor
-0.3
427
Tumor
-0.4
137
Tumor
-0.4
813
Tumor
-0.4
911
Tumor
-0.4
313
Tumor
-0.4
967
Tumor
-0.4
755
Tumor
-0.4
713
Tumor
-0.4
465
Tumor
-0.4
455
Tumor
-0.4
666
Normal
-0.5
361
Tumor
-0.5
873
Tumor
-0.5
527
Tumor
-0.5
1027
Tumor
-0.5
977
Tumor
-0.5
341
Tumor
-0.5
951
Tumor
-0.5
463
Tumor
-0.6
1025
Tumor
-0.6
351
Tumor
-0.6
277
Tumor
-0.6
975
Tumor
-0.6
777
Tumor
-0.6
112
Tumor
-0.6
965
Tumor
-0.6
571
Tumor
-0.7
937
Tumor
-0.7
744
Normal
-0.7
635
Tumor
-0.7
737
Tumor
-0.7
135
Tumor
-0.7
443
Tumor
-0.7
431
Tumor
-0.7
227
Tumor
-0.8
647
Tumor
-0.8
567
Tumor
-0.8
523
Tumor
-0.9
473
Tumor
-0.9
1013
Tumor
-0.9
741
Tumor
-0.9
745
Tumor
-0.9
357
Tumor
-0.9
445
Tumor
-0.9
957
Tumor
-1.0
425
Tumor
-1.0
131
Tumor
-1.0
695
Tumor
-1.1
981
Tumor
-1.1
123
Tumor
-1.3
435
Tumor
-1.5
743
Tumor
-1.9
1043
Tumor
-2.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
