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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP6R3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
173.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
152.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
97.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
47.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
45.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
41.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
40.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
38.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
35.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
29.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
29.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
29.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP6R3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.2
Number of samples
231
Samples
Sample
Description
TPM
DO45191
0 years, female, NA, stage:2, alive, 1200 days
354.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
74.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
42.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
40.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
39.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
34.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
34.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
33.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
30.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
22.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
22.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
112
Tumor
2.3
431
Tumor
1.6
473
Tumor
1.4
873
Tumor
1.0
135
Tumor
0.9
351
Tumor
0.7
957
Tumor
0.6
131
Tumor
0.6
813
Tumor
0.6
285
Tumor
0.6
737
Tumor
0.6
463
Tumor
0.5
257
Tumor
0.5
743
Tumor
0.5
1043
Tumor
0.5
863
Tumor
0.4
745
Tumor
0.4
661
Tumor
0.4
1013
Tumor
0.4
741
Tumor
0.4
573
Tumor
0.4
517
Tumor
0.4
415
Tumor
0.4
967
Tumor
0.4
671
Tumor
0.4
297
Tumor
0.4
665
Tumor
0.4
523
Tumor
0.4
411
Tumor
0.4
814
Normal
0.4
635
Tumor
0.4
865
Tumor
0.4
313
Tumor
0.4
125
Tumor
0.3
227
Tumor
0.3
147
Tumor
0.3
141
Tumor
0.3
283
Tumor
0.3
277
Tumor
0.3
211
Tumor
0.3
755
Tumor
0.3
851
Tumor
0.3
923
Tumor
0.3
425
Tumor
0.3
647
Tumor
0.3
921
Tumor
0.3
527
Tumor
0.3
877
Tumor
0.3
815
Tumor
0.3
965
Tumor
0.3
385
Tumor
0.2
537
Tumor
0.2
391
Tumor
0.2
213
Tumor
0.2
1025
Tumor
0.2
375
Tumor
0.2
161
Tumor
0.2
271
Tumor
0.2
467
Tumor
0.2
171
Tumor
0.2
491
Tumor
0.2
353
Tumor
0.2
217
Tumor
0.2
195
Tumor
0.1
387
Tumor
0.1
1031
Tumor
0.1
355
Tumor
0.1
513
Tumor
0.1
615
Tumor
0.1
553
Tumor
0.1
975
Tumor
0.1
937
Tumor
0.1
435
Tumor
0.1
343
Tumor
0.1
341
Tumor
0.1
713
Tumor
0.1
963
Tumor
0.1
641
Tumor
0.1
113
Tumor
0.1
817
Tumor
0.1
1027
Tumor
0.1
951
Tumor
0.1
1021
Tumor
0.1
127
Tumor
0.1
471
Tumor
0.1
535
Tumor
0.1
777
Tumor
0.1
192
Normal
0.1
455
Tumor
0.0
393
Tumor
0.0
861
Tumor
0.0
617
Tumor
0.0
383
Tumor
0.0
663
Tumor
0.0
447
Tumor
0.0
427
Tumor
0.0
881
Tumor
0.0
465
Tumor
0.0
1015
Tumor
0.0
915
Tumor
0.0
262
Normal
0.0
943
Tumor
0.0
232
Normal
0.0
272
Normal
0.0
715
Tumor
0.0
697
Tumor
0.0
223
Tumor
0.0
515
Tumor
0.0
451
Tumor
0.0
413
Tumor
0.0
966
Normal
0.0
497
Tumor
0.0
123
Tumor
0.0
386
Normal
0.0
664
Normal
0.0
191
Tumor
-0.1
298
Normal
-0.1
331
Tumor
-0.1
185
Tumor
-0.1
367
Tumor
-0.1
137
Tumor
-0.1
545
Tumor
-0.1
258
Normal
-0.1
983
Tumor
-0.1
911
Tumor
-0.1
925
Tumor
-0.1
917
Tumor
-0.1
628
Normal
-0.1
365
Tumor
-0.1
187
Tumor
-0.1
311
Tumor
-0.1
186
Normal
-0.1
487
Tumor
-0.1
461
Tumor
-0.1
126
Normal
-0.1
557
Tumor
-0.1
132
Normal
-0.1
493
Tumor
-0.1
111
Normal
-0.1
666
Normal
-0.1
357
Tumor
-0.1
361
Tumor
-0.1
445
Tumor
-0.1
114
Normal
-0.1
616
Normal
-0.1
977
Tumor
-0.1
221
Tumor
-0.1
421
Tumor
-0.1
536
Normal
-0.1
648
Normal
-0.1
146
Normal
-0.1
884
Normal
-0.1
468
Normal
-0.1
696
Normal
-0.1
434
Normal
-0.1
278
Normal
-0.1
136
Normal
-0.1
912
Normal
-0.1
785
Tumor
-0.1
394
Normal
-0.1
546
Normal
-0.1
392
Normal
-0.1
396
Normal
-0.1
472
Normal
-0.1
446
Normal
-0.1
474
Normal
-0.1
518
Normal
-0.1
332
Normal
-0.1
823
Tumor
-0.1
483
Tumor
-0.1
138
Normal
-0.1
568
Normal
-0.1
618
Normal
-0.1
744
Normal
-0.1
924
Normal
-0.2
981
Tumor
-0.2
636
Normal
-0.2
124
Normal
-0.2
554
Normal
-0.2
342
Normal
-0.2
268
Normal
-0.2
436
Normal
-0.2
627
Tumor
-0.2
267
Tumor
-0.2
368
Normal
-0.2
444
Normal
-0.2
1028
Normal
-0.2
481
Tumor
-0.2
148
Normal
-0.2
188
Normal
-0.2
882
Normal
-0.2
698
Normal
-0.2
672
Normal
-0.2
286
Normal
-0.2
196
Normal
-0.2
423
Tumor
-0.2
952
Normal
-0.2
1026
Normal
-0.2
456
Normal
-0.2
388
Normal
-0.2
218
Normal
-0.2
432
Normal
-0.2
738
Normal
-0.2
662
Normal
-0.2
477
Tumor
-0.2
955
Tumor
-0.2
1041
Tumor
-0.2
913
Tumor
-0.2
528
Normal
-0.2
162
Normal
-0.2
563
Tumor
-0.2
222
Normal
-0.2
328
Normal
-0.2
642
Normal
-0.2
433
Tumor
-0.2
354
Normal
-0.2
1042
Normal
-0.2
685
Tumor
-0.2
824
Normal
-0.2
366
Normal
-0.2
128
Normal
-0.2
538
Normal
-0.2
498
Normal
-0.2
1022
Normal
-0.2
376
Normal
-0.2
564
Normal
-0.2
314
Normal
-0.2
482
Normal
-0.2
746
Normal
-0.2
574
Normal
-0.2
722
Normal
-0.2
172
Normal
-0.2
344
Normal
-0.2
1016
Normal
-0.2
874
Normal
-0.2
364
Normal
-0.2
363
Tumor
-0.2
142
Normal
-0.2
352
Normal
-0.2
416
Normal
-0.2
862
Normal
-0.2
868
Normal
-0.2
214
Normal
-0.2
816
Normal
-0.2
452
Normal
-0.2
492
Normal
-0.2
721
Tumor
-0.2
362
Normal
-0.2
443
Tumor
-0.2
818
Normal
-0.3
695
Tumor
-0.3
964
Normal
-0.3
231
Tumor
-0.3
1046
Normal
-0.3
686
Normal
-0.3
395
Tumor
-0.3
723
Tumor
-0.3
958
Normal
-0.3
742
Normal
-0.3
312
Normal
-0.3
464
Normal
-0.3
284
Normal
-0.3
982
Normal
-0.3
145
Tumor
-0.3
478
Normal
-0.3
914
Normal
-0.3
534
Normal
-0.3
228
Normal
-0.3
728
Normal
-0.3
727
Tumor
-0.3
867
Tumor
-0.3
778
Normal
-0.3
916
Normal
-0.3
926
Normal
-0.3
516
Normal
-0.3
716
Normal
-0.3
466
Normal
-0.3
462
Normal
-0.3
567
Tumor
-0.3
358
Normal
-0.3
1032
Normal
-0.3
426
Normal
-0.3
1045
Tumor
-0.3
756
Normal
-0.3
858
Normal
-0.3
714
Normal
-0.3
514
Normal
-0.3
866
Normal
-0.3
412
Normal
-0.3
968
Normal
-0.3
356
Normal
-0.3
525
Tumor
-0.3
724
Normal
-0.3
414
Normal
-0.3
976
Normal
-0.3
488
Normal
-0.3
1044
Normal
-0.3
327
Tumor
-0.3
918
Normal
-0.3
224
Normal
-0.3
448
Normal
-0.3
424
Normal
-0.3
1014
Normal
-0.3
938
Normal
-0.3
526
Normal
-0.3
524
Normal
-0.3
422
Normal
-0.3
384
Normal
-0.3
944
Normal
-0.3
852
Normal
-0.3
878
Normal
-0.3
984
Normal
-0.3
864
Normal
-0.3
572
Normal
-0.3
212
Normal
-0.3
428
Normal
-0.4
484
Normal
-0.4
571
Tumor
-0.4
857
Tumor
-0.4
922
Normal
-0.4
956
Normal
-0.4
533
Tumor
-0.4
786
Normal
-0.4
494
Normal
-0.4
558
Normal
-0.4
883
Tumor
-0.4
954
Normal
-0.4
261
Tumor
-0.4
978
Normal
-0.4
953
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
