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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FOXRED1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
80.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
57.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
55.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
53.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
51.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
48.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
47.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
45.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
44.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
44.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
44.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
43.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
43.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
43.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
42.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
41.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
41.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
40.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
40.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
40.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
40.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
39.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
39.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
39.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
39.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
38.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
38.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
37.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
37.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
37.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
36.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
35.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
35.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
35.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
35.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
34.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
34.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
34.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
34.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
33.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
33.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
33.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
33.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
33.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
33.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
33.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
32.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
31.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
31.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
31.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
30.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
30.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
30.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
30.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
30.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
29.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
29.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
29.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
29.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
29.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
29.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
28.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
27.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
27.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
26.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
26.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
26.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
25.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
25.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
25.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
24.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
23.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
23.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
22.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
22.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
22.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
21.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
21.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
21.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
21.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
19.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
18.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FOXRED1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.4
Number of samples
231
Samples
Sample
Description
TPM
DO45161
0 years, male, NA, stage:2, dead, 540 days
70.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
56.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
55.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
54.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
54.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
51.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
48.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
44.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
44.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
43.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
42.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
42.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
41.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
41.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
41.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
41.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
40.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
39.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
38.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
36.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
36.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
36.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
36.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
36.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
35.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
35.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
35.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
35.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
34.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
34.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
33.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
32.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
32.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
32.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
32.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
31.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
30.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
30.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
30.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
29.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
29.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
29.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
28.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
28.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
28.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
28.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
27.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
27.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
27.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
27.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
27.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
26.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
26.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
23.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
22.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
127
Tumor
1.5
627
Tumor
1.4
227
Tumor
1.3
221
Tumor
1.2
641
Tumor
0.9
1043
Tumor
0.9
443
Tumor
0.8
341
Tumor
0.8
981
Tumor
0.8
537
Tumor
0.7
745
Tumor
0.7
925
Tumor
0.7
921
Tumor
0.7
517
Tumor
0.7
911
Tumor
0.7
1041
Tumor
0.6
463
Tumor
0.6
112
Tumor
0.6
421
Tumor
0.5
615
Tumor
0.5
387
Tumor
0.5
363
Tumor
0.5
713
Tumor
0.5
937
Tumor
0.5
435
Tumor
0.5
636
Normal
0.5
483
Tumor
0.5
1045
Tumor
0.5
361
Tumor
0.4
863
Tumor
0.4
823
Tumor
0.4
628
Normal
0.4
222
Normal
0.4
862
Normal
0.4
851
Tumor
0.4
912
Normal
0.4
665
Tumor
0.4
128
Normal
0.4
963
Tumor
0.4
696
Normal
0.4
571
Tumor
0.3
864
Normal
0.3
171
Tumor
0.3
616
Normal
0.3
915
Tumor
0.3
967
Tumor
0.3
563
Tumor
0.3
358
Normal
0.3
114
Normal
0.3
462
Normal
0.3
671
Tumor
0.3
111
Normal
0.3
722
Normal
0.3
567
Tumor
0.3
113
Tumor
0.3
362
Normal
0.3
367
Tumor
0.3
557
Tumor
0.3
1015
Tumor
0.3
714
Normal
0.3
568
Normal
0.3
231
Tumor
0.3
1022
Normal
0.3
214
Normal
0.3
884
Normal
0.3
716
Normal
0.3
526
Normal
0.3
277
Tumor
0.2
354
Normal
0.2
742
Normal
0.2
882
Normal
0.2
642
Normal
0.2
866
Normal
0.2
648
Normal
0.2
196
Normal
0.2
914
Normal
0.2
1014
Normal
0.2
132
Normal
0.2
824
Normal
0.2
666
Normal
0.2
328
Normal
0.2
356
Normal
0.2
436
Normal
0.2
1031
Tumor
0.2
482
Normal
0.2
723
Tumor
0.2
756
Normal
0.2
465
Tumor
0.2
1046
Normal
0.2
451
Tumor
0.2
528
Normal
0.2
618
Normal
0.2
452
Normal
0.2
1032
Normal
0.2
137
Tumor
0.2
365
Tumor
0.2
818
Normal
0.2
737
Tumor
0.2
553
Tumor
0.2
376
Normal
0.2
126
Normal
0.2
786
Normal
0.2
868
Normal
0.2
388
Normal
0.1
446
Normal
0.1
332
Normal
0.1
487
Tumor
0.1
352
Normal
0.1
468
Normal
0.1
1016
Normal
0.1
228
Normal
0.1
414
Normal
0.1
217
Tumor
0.1
271
Tumor
0.1
564
Normal
0.1
534
Normal
0.1
873
Tumor
0.1
342
Normal
0.1
924
Normal
0.1
314
Normal
0.1
464
Normal
0.1
944
Normal
0.1
1027
Tumor
0.1
874
Normal
0.1
546
Normal
0.1
147
Tumor
0.1
424
Normal
0.1
286
Normal
0.1
298
Normal
0.1
312
Normal
0.1
741
Tumor
0.1
278
Normal
0.1
364
Normal
0.1
852
Normal
0.1
426
Normal
0.1
366
Normal
0.1
272
Normal
0.1
964
Normal
0.1
518
Normal
0.1
982
Normal
0.1
357
Tumor
0.1
926
Normal
0.1
558
Normal
0.1
284
Normal
0.1
131
Tumor
0.1
124
Normal
0.1
213
Tumor
0.1
423
Tumor
0.1
815
Tumor
0.1
858
Normal
0.1
258
Normal
0.1
145
Tumor
0.1
816
Normal
0.1
142
Normal
0.1
473
Tumor
0.1
978
Normal
0.1
635
Tumor
0.1
257
Tumor
0.1
232
Normal
0.0
983
Tumor
0.0
262
Normal
0.0
662
Normal
0.0
218
Normal
0.0
494
Normal
0.0
1028
Normal
0.0
572
Normal
0.0
224
Normal
0.0
922
Normal
0.0
695
Tumor
0.0
411
Tumor
0.0
428
Normal
0.0
297
Tumor
0.0
721
Tumor
0.0
391
Tumor
0.0
481
Tumor
0.0
477
Tumor
0.0
432
Normal
0.0
514
Normal
0.0
715
Tumor
0.0
285
Tumor
0.0
867
Tumor
0.0
686
Normal
0.0
344
Normal
0.0
664
Normal
0.0
647
Tumor
0.0
136
Normal
0.0
471
Tumor
0.0
138
Normal
0.0
425
Tumor
0.0
516
Normal
0.0
697
Tumor
0.0
195
Tumor
0.0
954
Normal
0.0
466
Normal
0.0
1044
Normal
0.0
146
Normal
0.0
491
Tumor
0.0
778
Normal
0.0
1042
Normal
0.0
966
Normal
0.0
393
Tumor
0.0
268
Normal
0.0
878
Normal
0.0
938
Normal
0.0
433
Tumor
0.0
384
Normal
0.0
474
Normal
0.0
161
Tumor
0.0
685
Tumor
0.0
394
Normal
0.0
444
Normal
0.0
353
Tumor
0.0
698
Normal
0.0
456
Normal
0.0
413
Tumor
-0.1
484
Normal
-0.1
916
Normal
-0.1
434
Normal
-0.1
738
Normal
-0.1
918
Normal
-0.1
472
Normal
-0.1
968
Normal
-0.1
951
Tumor
-0.1
212
Normal
-0.1
1026
Normal
-0.1
1025
Tumor
-0.1
422
Normal
-0.1
728
Normal
-0.1
984
Normal
-0.1
148
Normal
-0.1
172
Normal
-0.1
448
Normal
-0.1
461
Tumor
-0.1
283
Tumor
-0.1
135
Tumor
-0.1
392
Normal
-0.1
396
Normal
-0.1
412
Normal
-0.1
416
Normal
-0.2
661
Tumor
-0.2
743
Tumor
-0.2
383
Tumor
-0.2
488
Normal
-0.2
368
Normal
-0.2
192
Normal
-0.2
574
Normal
-0.2
125
Tumor
-0.2
744
Normal
-0.2
952
Normal
-0.2
385
Tumor
-0.2
958
Normal
-0.2
554
Normal
-0.2
162
Normal
-0.2
431
Tumor
-0.2
672
Normal
-0.2
188
Normal
-0.2
785
Tumor
-0.2
267
Tumor
-0.2
525
Tumor
-0.2
427
Tumor
-0.2
386
Normal
-0.2
141
Tumor
-0.2
976
Normal
-0.2
498
Normal
-0.2
513
Tumor
-0.2
746
Normal
-0.2
857
Tumor
-0.2
965
Tumor
-0.3
975
Tumor
-0.3
923
Tumor
-0.3
186
Normal
-0.3
883
Tumor
-0.3
515
Tumor
-0.3
478
Normal
-0.3
191
Tumor
-0.3
727
Tumor
-0.3
538
Normal
-0.3
331
Tumor
-0.3
877
Tumor
-0.3
524
Normal
-0.3
881
Tumor
-0.3
185
Tumor
-0.3
123
Tumor
-0.3
755
Tumor
-0.3
261
Tumor
-0.3
455
Tumor
-0.3
492
Normal
-0.3
573
Tumor
-0.4
953
Tumor
-0.4
493
Tumor
-0.4
536
Normal
-0.4
865
Tumor
-0.4
955
Tumor
-0.4
327
Tumor
-0.4
351
Tumor
-0.4
956
Normal
-0.4
447
Tumor
-0.4
535
Tumor
-0.4
395
Tumor
-0.4
617
Tumor
-0.4
957
Tumor
-0.4
724
Normal
-0.4
187
Tumor
-0.4
313
Tumor
-0.4
817
Tumor
-0.4
415
Tumor
-0.4
375
Tumor
-0.4
355
Tumor
-0.5
1021
Tumor
-0.5
861
Tumor
-0.5
913
Tumor
-0.5
445
Tumor
-0.5
533
Tumor
-0.5
977
Tumor
-0.5
223
Tumor
-0.5
311
Tumor
-0.6
343
Tumor
-0.6
917
Tumor
-0.6
814
Normal
-0.6
467
Tumor
-0.6
497
Tumor
-0.7
943
Tumor
-0.8
1013
Tumor
-0.8
663
Tumor
-0.9
813
Tumor
-0.9
211
Tumor
-0.9
523
Tumor
-0.9
527
Tumor
-1.0
777
Tumor
-1.1
545
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
