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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DCPS is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
236.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
229.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
220.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
176.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
167.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
159.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
155.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
146.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
134.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
133.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
133.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
133.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
132.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
131.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
131.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
126.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
125.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
124.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
111.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
111.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
109.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
108.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
105.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
104.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
103.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
103.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
102.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
102.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
100.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
97.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
96.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
96.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
94.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
93.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
93.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
92.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
89.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
88.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
87.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
85.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
85.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
84.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
83.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
82.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
79.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
79.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
79.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
78.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
75.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
74.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
73.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
72.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
72.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
71.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
71.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
70.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
69.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
68.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
67.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
66.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
66.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
65.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
65.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
65.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
65.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
64.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
63.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
61.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
61.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
61.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
59.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
59.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
58.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
58.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
56.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
55.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
55.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
54.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
54.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
54.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
53.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
53.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
52.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
52.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
51.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
51.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
51.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
51.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
50.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
50.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
50.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
50.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
49.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
49.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
48.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
48.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
48.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
47.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
47.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
47.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
46.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
46.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
46.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
46.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
46.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
45.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
45.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
45.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
45.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
44.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
44.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
43.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
43.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
42.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
41.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
41.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
41.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
41.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
41.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
40.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
40.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
40.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
40.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
40.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
40.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
39.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
39.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
38.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
38.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
38.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
38.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
38.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
37.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
37.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
37.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
37.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
37.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
36.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
36.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
36.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
36.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
35.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
35.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
35.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
35.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
35.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
35.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
34.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
34.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
33.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
32.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
32.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
32.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
31.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
31.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
30.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
30.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
30.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
29.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
29.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
29.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
28.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
28.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
27.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
27.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
25.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
24.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
22.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
21.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
21.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DCPS is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.3
Number of samples
231
Samples
Sample
Description
TPM
DO48682
0 years, female, NA, stage:3, dead, 120 days
242.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
145.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
139.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
122.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
119.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
116.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
114.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
113.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
108.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
103.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
82.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
80.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
79.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
77.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
76.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
75.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
74.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
73.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
72.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
69.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
67.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
66.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
62.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
62.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
62.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
60.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
57.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
56.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
56.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
54.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
53.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
51.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
47.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
45.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
44.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
44.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
43.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
43.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
43.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
42.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
42.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
41.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
40.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
40.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
40.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
39.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
39.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
38.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
38.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
36.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
36.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
35.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
35.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
35.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
34.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
34.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
33.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
33.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
33.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
33.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
32.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
31.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
31.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
31.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
30.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
28.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
28.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
28.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
27.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
27.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
27.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
26.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
24.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
23.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
22.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
21.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
271
Tumor
0.7
473
Tumor
0.7
487
Tumor
0.6
425
Tumor
0.6
431
Tumor
0.5
513
Tumor
0.5
483
Tumor
0.5
435
Tumor
0.5
975
Tumor
0.5
635
Tumor
0.5
785
Tumor
0.4
443
Tumor
0.4
1021
Tumor
0.4
881
Tumor
0.4
741
Tumor
0.4
817
Tumor
0.4
357
Tumor
0.3
131
Tumor
0.3
185
Tumor
0.3
863
Tumor
0.3
146
Normal
0.3
517
Tumor
0.3
344
Normal
0.3
387
Tumor
0.3
342
Normal
0.3
127
Tumor
0.3
427
Tumor
0.3
112
Tumor
0.3
298
Normal
0.3
128
Normal
0.3
744
Normal
0.3
1031
Tumor
0.3
478
Normal
0.2
498
Normal
0.2
523
Tumor
0.2
984
Normal
0.2
192
Normal
0.2
386
Normal
0.2
493
Tumor
0.2
434
Normal
0.2
313
Tumor
0.2
343
Tumor
0.2
191
Tumor
0.2
615
Tumor
0.2
1027
Tumor
0.2
958
Normal
0.2
415
Tumor
0.2
865
Tumor
0.2
413
Tumor
0.2
488
Normal
0.2
917
Tumor
0.2
977
Tumor
0.2
444
Normal
0.2
332
Normal
0.2
217
Tumor
0.2
211
Tumor
0.2
126
Normal
0.2
737
Tumor
0.2
423
Tumor
0.2
516
Normal
0.2
391
Tumor
0.2
355
Tumor
0.2
433
Tumor
0.2
497
Tumor
0.1
981
Tumor
0.1
272
Normal
0.1
354
Normal
0.1
125
Tumor
0.1
492
Normal
0.1
366
Normal
0.1
394
Normal
0.1
142
Normal
0.1
376
Normal
0.1
538
Normal
0.1
412
Normal
0.1
661
Tumor
0.1
926
Normal
0.1
114
Normal
0.1
352
Normal
0.1
135
Tumor
0.1
392
Normal
0.1
358
Normal
0.1
685
Tumor
0.1
686
Normal
0.1
537
Tumor
0.1
1015
Tumor
0.1
314
Normal
0.1
925
Tumor
0.1
465
Tumor
0.1
557
Tumor
0.1
353
Tumor
0.1
746
Normal
0.1
922
Normal
0.1
136
Normal
0.1
124
Normal
0.1
471
Tumor
0.1
494
Normal
0.1
161
Tumor
0.1
966
Normal
0.1
525
Tumor
0.1
222
Normal
0.1
714
Normal
0.1
1042
Normal
0.1
384
Normal
0.1
195
Tumor
0.1
113
Tumor
0.1
696
Normal
0.1
944
Normal
0.1
563
Tumor
0.1
446
Normal
0.1
162
Normal
0.1
368
Normal
0.1
627
Tumor
0.1
424
Normal
0.1
524
Normal
0.1
1014
Normal
0.1
213
Tumor
0.1
913
Tumor
0.1
721
Tumor
0.1
365
Tumor
0.1
278
Normal
0.0
396
Normal
0.0
954
Normal
0.0
277
Tumor
0.0
1032
Normal
0.0
462
Normal
0.0
224
Normal
0.0
445
Tumor
0.0
921
Tumor
0.0
221
Tumor
0.0
554
Normal
0.0
662
Normal
0.0
778
Normal
0.0
481
Tumor
0.0
467
Tumor
0.0
132
Normal
0.0
484
Normal
0.0
738
Normal
0.0
534
Normal
0.0
514
Normal
0.0
957
Tumor
0.0
665
Tumor
0.0
426
Normal
0.0
536
Normal
0.0
196
Normal
0.0
664
Normal
0.0
976
Normal
0.0
461
Tumor
0.0
232
Normal
0.0
455
Tumor
0.0
912
Normal
0.0
515
Tumor
0.0
186
Normal
0.0
172
Normal
0.0
383
Tumor
0.0
375
Tumor
0.0
938
Normal
0.0
967
Tumor
0.0
982
Normal
0.0
723
Tumor
0.0
361
Tumor
0.0
756
Normal
0.0
414
Normal
0.0
867
Tumor
0.0
285
Tumor
0.0
1026
Normal
0.0
924
Normal
0.0
364
Normal
0.0
111
Normal
0.0
862
Normal
0.0
261
Tumor
0.0
362
Normal
0.0
742
Normal
0.0
472
Normal
0.0
698
Normal
0.0
715
Tumor
0.0
528
Normal
0.0
647
Tumor
0.0
1022
Normal
0.0
546
Normal
0.0
724
Normal
0.0
636
Normal
0.0
878
Normal
0.0
262
Normal
0.0
477
Tumor
0.0
356
Normal
0.0
978
Normal
0.0
267
Tumor
0.0
882
Normal
0.0
283
Tumor
0.0
963
Tumor
0.0
918
Normal
0.0
331
Tumor
0.0
672
Normal
-0.1
915
Tumor
-0.1
755
Tumor
-0.1
666
Normal
-0.1
952
Normal
-0.1
432
Normal
-0.1
328
Normal
-0.1
258
Normal
-0.1
955
Tumor
-0.1
218
Normal
-0.1
526
Normal
-0.1
616
Normal
-0.1
187
Tumor
-0.1
716
Normal
-0.1
416
Normal
-0.1
436
Normal
-0.1
188
Normal
-0.1
968
Normal
-0.1
1028
Normal
-0.1
214
Normal
-0.1
1044
Normal
-0.1
916
Normal
-0.1
385
Tumor
-0.1
823
Tumor
-0.1
456
Normal
-0.1
518
Normal
-0.1
137
Tumor
-0.1
953
Tumor
-0.1
663
Tumor
-0.1
212
Normal
-0.1
452
Normal
-0.1
482
Normal
-0.1
268
Normal
-0.1
527
Tumor
-0.1
866
Normal
-0.1
572
Normal
-0.1
964
Normal
-0.1
466
Normal
-0.1
367
Tumor
-0.1
1016
Normal
-0.1
468
Normal
-0.1
141
Tumor
-0.1
284
Normal
-0.1
914
Normal
-0.1
138
Normal
-0.1
574
Normal
-0.1
648
Normal
-0.1
286
Normal
-0.1
951
Tumor
-0.1
786
Normal
-0.1
312
Normal
-0.1
568
Normal
-0.1
341
Tumor
-0.2
1041
Tumor
-0.2
956
Normal
-0.2
558
Normal
-0.2
911
Tumor
-0.2
388
Normal
-0.2
618
Normal
-0.2
474
Normal
-0.2
884
Normal
-0.2
722
Normal
-0.2
864
Normal
-0.2
428
Normal
-0.2
533
Tumor
-0.2
818
Normal
-0.2
228
Normal
-0.2
171
Tumor
-0.2
671
Tumor
-0.2
628
Normal
-0.2
421
Tumor
-0.2
1025
Tumor
-0.2
297
Tumor
-0.2
943
Tumor
-0.2
464
Normal
-0.2
393
Tumor
-0.2
877
Tumor
-0.2
463
Tumor
-0.2
231
Tumor
-0.2
448
Normal
-0.2
861
Tumor
-0.2
1013
Tumor
-0.2
1045
Tumor
-0.2
728
Normal
-0.2
535
Tumor
-0.2
148
Normal
-0.2
642
Normal
-0.2
923
Tumor
-0.2
617
Tumor
-0.2
564
Normal
-0.2
1046
Normal
-0.2
327
Tumor
-0.2
868
Normal
-0.3
815
Tumor
-0.3
874
Normal
-0.3
858
Normal
-0.3
1043
Tumor
-0.3
395
Tumor
-0.3
824
Normal
-0.3
573
Tumor
-0.3
965
Tumor
-0.3
641
Tumor
-0.3
311
Tumor
-0.3
553
Tumor
-0.3
257
Tumor
-0.3
852
Normal
-0.3
816
Normal
-0.3
411
Tumor
-0.4
697
Tumor
-0.4
713
Tumor
-0.4
123
Tumor
-0.4
883
Tumor
-0.4
545
Tumor
-0.4
422
Normal
-0.4
451
Tumor
-0.4
727
Tumor
-0.4
857
Tumor
-0.5
491
Tumor
-0.5
145
Tumor
-0.5
447
Tumor
-0.5
814
Normal
-0.5
223
Tumor
-0.5
567
Tumor
-0.5
851
Tumor
-0.5
777
Tumor
-0.5
873
Tumor
-0.5
147
Tumor
-0.5
983
Tumor
-0.5
363
Tumor
-0.6
745
Tumor
-0.6
743
Tumor
-0.6
937
Tumor
-0.6
813
Tumor
-0.6
571
Tumor
-0.7
351
Tumor
-0.8
227
Tumor
-0.8
695
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
