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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UNC93B1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
100.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
71.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
55.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
54.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
53.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
53.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
53.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
46.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
46.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
42.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
40.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
40.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
39.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
35.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
35.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
34.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
33.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
33.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
32.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
31.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
28.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
28.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
24.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
23.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
21.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UNC93B1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.1
Number of samples
231
Samples
Sample
Description
TPM
DO45191
0 years, female, NA, stage:2, alive, 1200 days
104.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
74.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
58.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
56.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
55.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
46.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
42.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
40.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
38.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
38.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
35.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
33.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
31.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
26.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
112
Tumor
2.7
473
Tumor
1.7
431
Tumor
1.0
211
Tumor
0.9
434
Normal
0.9
661
Tumor
0.9
311
Tumor
0.9
262
Normal
0.8
268
Normal
0.7
213
Tumor
0.7
415
Tumor
0.7
536
Normal
0.7
283
Tumor
0.6
258
Normal
0.6
471
Tumor
0.6
527
Tumor
0.6
952
Normal
0.6
257
Tumor
0.5
492
Normal
0.5
455
Tumor
0.5
573
Tumor
0.5
467
Tumor
0.5
217
Tumor
0.5
557
Tumor
0.5
814
Normal
0.5
367
Tumor
0.5
918
Normal
0.5
917
Tumor
0.5
218
Normal
0.5
916
Normal
0.5
966
Normal
0.5
362
Normal
0.5
135
Tumor
0.5
524
Normal
0.5
416
Normal
0.4
231
Tumor
0.4
533
Tumor
0.4
271
Tumor
0.4
925
Tumor
0.4
366
Normal
0.4
468
Normal
0.4
456
Normal
0.4
124
Normal
0.4
538
Normal
0.4
926
Normal
0.4
957
Tumor
0.4
452
Normal
0.4
955
Tumor
0.3
343
Tumor
0.3
956
Normal
0.3
463
Tumor
0.3
272
Normal
0.3
444
Normal
0.3
963
Tumor
0.3
884
Normal
0.3
195
Tumor
0.3
478
Normal
0.3
553
Tumor
0.3
232
Normal
0.3
915
Tumor
0.3
474
Normal
0.3
188
Normal
0.3
1046
Normal
0.3
954
Normal
0.3
223
Tumor
0.2
344
Normal
0.2
384
Normal
0.2
192
Normal
0.2
1044
Normal
0.2
462
Normal
0.2
978
Normal
0.2
881
Tumor
0.2
868
Normal
0.2
546
Normal
0.2
666
Normal
0.2
461
Tumor
0.2
574
Normal
0.2
267
Tumor
0.2
482
Normal
0.2
376
Normal
0.2
224
Normal
0.2
214
Normal
0.2
968
Normal
0.2
498
Normal
0.2
451
Tumor
0.2
724
Normal
0.2
383
Tumor
0.2
312
Normal
0.2
364
Normal
0.2
491
Tumor
0.2
375
Tumor
0.2
466
Normal
0.2
924
Normal
0.2
185
Tumor
0.2
662
Normal
0.2
554
Normal
0.2
447
Tumor
0.2
464
Normal
0.2
298
Normal
0.1
396
Normal
0.1
518
Normal
0.1
922
Normal
0.1
976
Normal
0.1
728
Normal
0.1
1015
Tumor
0.1
277
Tumor
0.1
421
Tumor
0.1
494
Normal
0.1
114
Normal
0.1
558
Normal
0.1
493
Tumor
0.1
958
Normal
0.1
352
Normal
0.1
412
Normal
0.1
873
Tumor
0.1
141
Tumor
0.1
328
Normal
0.1
484
Normal
0.1
526
Normal
0.1
395
Tumor
0.1
813
Tumor
0.1
433
Tumor
0.1
138
Normal
0.1
137
Tumor
0.1
136
Normal
0.1
913
Tumor
0.1
883
Tumor
0.1
332
Normal
0.1
126
Normal
0.1
284
Normal
0.1
516
Normal
0.1
128
Normal
0.1
297
Tumor
0.1
443
Tumor
0.1
212
Normal
0.0
1026
Normal
0.0
327
Tumor
0.0
191
Tumor
0.0
261
Tumor
0.0
943
Tumor
0.0
125
Tumor
0.0
1045
Tumor
0.0
975
Tumor
0.0
113
Tumor
0.0
472
Normal
0.0
111
Normal
0.0
525
Tumor
0.0
365
Tumor
0.0
721
Tumor
0.0
432
Normal
0.0
385
Tumor
0.0
361
Tumor
0.0
938
Normal
0.0
147
Tumor
0.0
535
Tumor
0.0
278
Normal
0.0
187
Tumor
0.0
914
Normal
0.0
878
Normal
0.0
618
Normal
0.0
882
Normal
0.0
488
Normal
0.0
564
Normal
0.0
146
Normal
0.0
427
Tumor
0.0
816
Normal
-0.1
221
Tumor
-0.1
617
Tumor
-0.1
142
Normal
-0.1
563
Tumor
-0.1
286
Normal
-0.1
186
Normal
-0.1
422
Normal
-0.1
686
Normal
-0.1
448
Normal
-0.1
534
Normal
-0.1
428
Normal
-0.1
355
Tumor
-0.1
426
Normal
-0.1
738
Normal
-0.1
572
Normal
-0.1
386
Normal
-0.1
1016
Normal
-0.1
148
Normal
-0.1
921
Tumor
-0.1
445
Tumor
-0.1
722
Normal
-0.1
568
Normal
-0.1
648
Normal
-0.1
664
Normal
-0.1
863
Tumor
-0.1
523
Tumor
-0.1
537
Tumor
-0.1
446
Normal
-0.1
672
Normal
-0.1
172
Normal
-0.1
628
Normal
-0.1
713
Tumor
-0.1
127
Tumor
-0.1
487
Tumor
-0.1
483
Tumor
-0.2
424
Normal
-0.2
363
Tumor
-0.2
222
Normal
-0.2
984
Normal
-0.2
744
Normal
-0.2
786
Normal
-0.2
132
Normal
-0.2
716
Normal
-0.2
341
Tumor
-0.2
742
Normal
-0.2
851
Tumor
-0.2
1028
Normal
-0.2
824
Normal
-0.2
665
Tumor
-0.2
818
Normal
-0.2
714
Normal
-0.2
414
Normal
-0.2
937
Tumor
-0.2
387
Tumor
-0.2
145
Tumor
-0.2
864
Normal
-0.2
514
Normal
-0.2
642
Normal
-0.2
515
Tumor
-0.2
1042
Normal
-0.2
162
Normal
-0.2
964
Normal
-0.2
391
Tumor
-0.2
394
Normal
-0.2
982
Normal
-0.2
528
Normal
-0.2
977
Tumor
-0.2
911
Tumor
-0.2
392
Normal
-0.2
196
Normal
-0.2
1022
Normal
-0.2
852
Normal
-0.2
1027
Tumor
-0.3
354
Normal
-0.3
778
Normal
-0.3
228
Normal
-0.3
923
Tumor
-0.3
697
Tumor
-0.3
368
Normal
-0.3
314
Normal
-0.3
647
Tumor
-0.3
756
Normal
-0.3
353
Tumor
-0.3
413
Tumor
-0.3
497
Tumor
-0.3
857
Tumor
-0.3
545
Tumor
-0.3
866
Normal
-0.3
123
Tumor
-0.3
393
Tumor
-0.3
481
Tumor
-0.3
983
Tumor
-0.3
696
Normal
-0.3
425
Tumor
-0.3
388
Normal
-0.3
342
Normal
-0.3
1043
Tumor
-0.4
823
Tumor
-0.4
423
Tumor
-0.4
723
Tumor
-0.4
356
Normal
-0.4
727
Tumor
-0.4
953
Tumor
-0.4
171
Tumor
-0.4
1025
Tumor
-0.4
944
Normal
-0.4
663
Tumor
-0.4
161
Tumor
-0.4
641
Tumor
-0.4
741
Tumor
-0.4
357
Tumor
-0.4
616
Normal
-0.4
465
Tumor
-0.4
567
Tumor
-0.4
671
Tumor
-0.4
877
Tumor
-0.5
746
Normal
-0.5
698
Normal
-0.5
715
Tumor
-0.5
636
Normal
-0.5
436
Normal
-0.5
358
Normal
-0.5
858
Normal
-0.5
965
Tumor
-0.5
951
Tumor
-0.5
1031
Tumor
-0.5
685
Tumor
-0.5
755
Tumor
-0.5
285
Tumor
-0.5
615
Tumor
-0.5
627
Tumor
-0.5
912
Normal
-0.5
867
Tumor
-0.5
1014
Normal
-0.5
331
Tumor
-0.5
817
Tumor
-0.5
815
Tumor
-0.5
513
Tumor
-0.5
785
Tumor
-0.6
351
Tumor
-0.6
313
Tumor
-0.6
1032
Normal
-0.6
743
Tumor
-0.6
635
Tumor
-0.6
1021
Tumor
-0.6
477
Tumor
-0.6
874
Normal
-0.7
571
Tumor
-0.7
737
Tumor
-0.7
967
Tumor
-0.7
861
Tumor
-0.7
981
Tumor
-0.8
862
Normal
-0.8
227
Tumor
-0.9
517
Tumor
-0.9
411
Tumor
-0.9
435
Tumor
-0.9
131
Tumor
-1.0
777
Tumor
-1.0
865
Tumor
-1.1
1041
Tumor
-1.2
1013
Tumor
-1.3
745
Tumor
-1.4
695
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
