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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OSBP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
51.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
50.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
47.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
47.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
43.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
41.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
40.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
40.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
40.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
39.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
39.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
39.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
38.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
38.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
38.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
37.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
37.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
37.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
36.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
36.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
35.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
34.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
33.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
33.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
33.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
32.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
31.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
30.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
30.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
30.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
30.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
29.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
28.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
28.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
27.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
27.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
27.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
27.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
26.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
24.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
24.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
20.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OSBP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.2
Number of samples
231
Samples
Sample
Description
TPM
DO48733
0 years, male, NA, stage:2, alive, 600 days
38.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
37.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
37.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
37.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
36.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
35.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
33.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
33.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
33.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
32.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
32.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
31.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
31.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
30.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
30.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
28.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
27.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
24.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
24.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
23.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
22.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
327
Tumor
0.8
777
Tumor
0.8
1027
Tumor
0.7
147
Tumor
0.7
527
Tumor
0.6
937
Tumor
0.6
515
Tumor
0.6
981
Tumor
0.5
955
Tumor
0.5
925
Tumor
0.5
865
Tumor
0.5
635
Tumor
0.5
727
Tumor
0.5
1026
Normal
0.4
745
Tumor
0.4
911
Tumor
0.4
523
Tumor
0.4
1025
Tumor
0.4
617
Tumor
0.4
537
Tumor
0.4
545
Tumor
0.4
218
Normal
0.4
411
Tumor
0.4
721
Tumor
0.4
863
Tumor
0.4
873
Tumor
0.4
513
Tumor
0.3
1021
Tumor
0.3
924
Normal
0.3
1044
Normal
0.3
728
Normal
0.3
436
Normal
0.3
443
Tumor
0.3
285
Tumor
0.3
647
Tumor
0.3
921
Tumor
0.3
557
Tumor
0.3
695
Tumor
0.3
746
Normal
0.3
481
Tumor
0.3
713
Tumor
0.3
952
Normal
0.3
477
Tumor
0.3
518
Normal
0.3
1043
Tumor
0.3
851
Tumor
0.3
957
Tumor
0.3
368
Normal
0.3
488
Normal
0.3
912
Normal
0.3
553
Tumor
0.2
953
Tumor
0.2
697
Tumor
0.2
738
Normal
0.2
471
Tumor
0.2
221
Tumor
0.2
415
Tumor
0.2
696
Normal
0.2
723
Tumor
0.2
484
Normal
0.2
271
Tumor
0.2
461
Tumor
0.2
487
Tumor
0.2
966
Normal
0.2
857
Tumor
0.2
918
Normal
0.2
982
Normal
0.2
353
Tumor
0.2
685
Tumor
0.2
113
Tumor
0.2
462
Normal
0.2
818
Normal
0.2
412
Normal
0.2
737
Tumor
0.2
714
Normal
0.2
956
Normal
0.2
778
Normal
0.2
528
Normal
0.2
1046
Normal
0.2
1041
Tumor
0.2
1022
Normal
0.2
526
Normal
0.2
228
Normal
0.2
926
Normal
0.2
554
Normal
0.2
755
Tumor
0.2
944
Normal
0.2
286
Normal
0.2
482
Normal
0.2
938
Normal
0.2
341
Tumor
0.2
862
Normal
0.2
698
Normal
0.2
533
Tumor
0.2
786
Normal
0.2
722
Normal
0.2
756
Normal
0.2
858
Normal
0.2
257
Tumor
0.2
1014
Normal
0.2
964
Normal
0.2
186
Normal
0.2
426
Normal
0.2
882
Normal
0.2
815
Tumor
0.2
716
Normal
0.2
558
Normal
0.2
446
Normal
0.2
884
Normal
0.2
824
Normal
0.1
1015
Tumor
0.1
298
Normal
0.1
212
Normal
0.1
112
Tumor
0.1
516
Normal
0.1
514
Normal
0.1
913
Tumor
0.1
223
Tumor
0.1
1031
Tumor
0.1
428
Normal
0.1
636
Normal
0.1
416
Normal
0.1
483
Tumor
0.1
1032
Normal
0.1
127
Tumor
0.1
1042
Normal
0.1
222
Normal
0.1
664
Normal
0.1
915
Tumor
0.1
217
Tumor
0.1
978
Normal
0.1
922
Normal
0.1
356
Normal
0.1
572
Normal
0.1
1016
Normal
0.1
641
Tumor
0.1
816
Normal
0.1
618
Normal
0.1
162
Normal
0.1
277
Tumor
0.1
534
Normal
0.1
742
Normal
0.1
568
Normal
0.1
123
Tumor
0.1
686
Normal
0.1
131
Tumor
0.1
466
Normal
0.1
866
Normal
0.1
472
Normal
0.1
364
Normal
0.1
916
Normal
0.1
451
Tumor
0.1
525
Tumor
0.1
227
Tumor
0.1
195
Tumor
0.1
427
Tumor
0.1
1028
Normal
0.1
546
Normal
0.1
494
Normal
0.1
142
Normal
0.1
968
Normal
0.1
648
Normal
0.1
467
Tumor
0.1
448
Normal
0.1
868
Normal
0.1
328
Normal
0.1
424
Normal
0.1
196
Normal
0.1
376
Normal
0.1
474
Normal
0.1
642
Normal
0.1
564
Normal
0.1
573
Tumor
0.1
344
Normal
0.1
358
Normal
0.1
393
Tumor
0.1
111
Normal
0.1
413
Tumor
0.1
628
Normal
0.1
1045
Tumor
0.1
342
Normal
0.1
422
Normal
0.1
524
Normal
0.1
191
Tumor
0.1
148
Normal
0.1
464
Normal
0.1
666
Normal
0.1
616
Normal
0.1
396
Normal
0.1
161
Tumor
0.1
456
Normal
0.1
362
Normal
0.1
563
Tumor
0.1
314
Normal
0.1
743
Tumor
0.1
615
Tumor
0.0
864
Normal
0.0
258
Normal
0.0
141
Tumor
0.0
447
Tumor
0.0
923
Tumor
0.0
172
Normal
0.0
128
Normal
0.0
878
Normal
0.0
145
Tumor
0.0
392
Normal
0.0
414
Normal
0.0
232
Normal
0.0
365
Tumor
0.0
386
Normal
0.0
977
Tumor
0.0
354
Normal
0.0
124
Normal
0.0
874
Normal
0.0
665
Tumor
0.0
984
Normal
0.0
492
Normal
0.0
171
Tumor
0.0
332
Normal
0.0
852
Normal
0.0
214
Normal
0.0
823
Tumor
0.0
262
Normal
0.0
284
Normal
0.0
627
Tumor
0.0
1013
Tumor
0.0
958
Normal
0.0
465
Tumor
0.0
538
Normal
0.0
867
Tumor
0.0
136
Normal
0.0
114
Normal
0.0
861
Tumor
0.0
394
Normal
0.0
662
Normal
0.0
517
Tumor
0.0
432
Normal
0.0
132
Normal
0.0
883
Tumor
0.0
361
Tumor
0.0
813
Tumor
0.0
498
Normal
0.0
312
Normal
0.0
663
Tumor
0.0
574
Normal
0.0
352
Normal
0.0
146
Normal
0.0
536
Normal
0.0
435
Tumor
0.0
126
Normal
0.0
497
Tumor
0.0
452
Normal
0.0
914
Normal
0.0
715
Tumor
-0.1
187
Tumor
-0.1
366
Normal
-0.1
463
Tumor
-0.1
445
Tumor
-0.1
185
Tumor
-0.1
425
Tumor
-0.1
363
Tumor
-0.1
137
Tumor
-0.1
744
Normal
-0.1
741
Tumor
-0.1
975
Tumor
-0.1
434
Normal
-0.1
455
Tumor
-0.1
384
Normal
-0.1
785
Tumor
-0.1
267
Tumor
-0.1
278
Normal
-0.1
268
Normal
-0.1
188
Normal
-0.1
395
Tumor
-0.1
672
Normal
-0.1
272
Normal
-0.1
433
Tumor
-0.1
138
Normal
-0.1
954
Normal
-0.1
421
Tumor
-0.1
224
Normal
-0.1
478
Normal
-0.1
493
Tumor
-0.1
423
Tumor
-0.1
881
Tumor
-0.1
313
Tumor
-0.1
125
Tumor
-0.1
357
Tumor
-0.1
468
Normal
-0.1
297
Tumor
-0.1
261
Tumor
-0.1
943
Tumor
-0.1
331
Tumor
-0.1
388
Normal
-0.1
963
Tumor
-0.1
355
Tumor
-0.1
976
Normal
-0.2
917
Tumor
-0.2
375
Tumor
-0.2
387
Tumor
-0.2
567
Tumor
-0.2
967
Tumor
-0.2
444
Normal
-0.2
951
Tumor
-0.2
135
Tumor
-0.2
817
Tumor
-0.2
213
Tumor
-0.2
211
Tumor
-0.3
283
Tumor
-0.3
535
Tumor
-0.3
814
Normal
-0.3
192
Normal
-0.3
571
Tumor
-0.3
491
Tumor
-0.3
343
Tumor
-0.3
431
Tumor
-0.3
367
Tumor
-0.3
391
Tumor
-0.3
877
Tumor
-0.4
671
Tumor
-0.4
231
Tumor
-0.4
383
Tumor
-0.4
983
Tumor
-0.4
385
Tumor
-0.5
965
Tumor
-0.5
724
Normal
-0.5
351
Tumor
-0.5
311
Tumor
-0.6
473
Tumor
-0.6
661
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
