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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EHD1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
43.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
38.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
32.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
28.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
27.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
26.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
16.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EHD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.1
Number of samples
231
Samples
Sample
Description
TPM
DO45217
0 years, female, NA, stage:3, dead, 270 days
55.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
50.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
40.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
28.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
0.7
786
Normal
0.6
434
Normal
0.5
126
Normal
0.5
628
Normal
0.5
824
Normal
0.5
664
Normal
0.5
464
Normal
0.5
111
Normal
0.5
723
Tumor
0.5
1022
Normal
0.5
648
Normal
0.5
262
Normal
0.5
332
Normal
0.5
456
Normal
0.5
686
Normal
0.5
272
Normal
0.5
746
Normal
0.5
858
Normal
0.5
818
Normal
0.5
816
Normal
0.5
446
Normal
0.5
1032
Normal
0.5
914
Normal
0.4
528
Normal
0.4
728
Normal
0.4
192
Normal
0.4
128
Normal
0.4
462
Normal
0.4
396
Normal
0.4
414
Normal
0.4
1026
Normal
0.4
424
Normal
0.4
356
Normal
0.4
432
Normal
0.4
738
Normal
0.4
352
Normal
0.4
196
Normal
0.4
778
Normal
0.4
698
Normal
0.4
472
Normal
0.4
258
Normal
0.4
864
Normal
0.4
358
Normal
0.4
1042
Normal
0.4
742
Normal
0.4
136
Normal
0.4
354
Normal
0.4
884
Normal
0.4
978
Normal
0.4
386
Normal
0.4
882
Normal
0.4
716
Normal
0.4
514
Normal
0.4
938
Normal
0.4
436
Normal
0.4
862
Normal
0.4
124
Normal
0.4
966
Normal
0.4
466
Normal
0.4
162
Normal
0.4
482
Normal
0.4
312
Normal
0.4
132
Normal
0.4
298
Normal
0.4
756
Normal
0.4
474
Normal
0.4
666
Normal
0.4
1046
Normal
0.4
428
Normal
0.4
217
Tumor
0.4
222
Normal
0.4
866
Normal
0.4
314
Normal
0.4
426
Normal
0.4
526
Normal
0.4
616
Normal
0.4
662
Normal
0.3
142
Normal
0.3
218
Normal
0.3
572
Normal
0.3
188
Normal
0.3
362
Normal
0.3
518
Normal
0.3
944
Normal
0.3
494
Normal
0.3
1016
Normal
0.3
956
Normal
0.3
917
Tumor
0.3
232
Normal
0.3
412
Normal
0.3
814
Normal
0.3
138
Normal
0.3
618
Normal
0.3
714
Normal
0.3
912
Normal
0.3
186
Normal
0.3
926
Normal
0.3
452
Normal
0.3
968
Normal
0.3
1044
Normal
0.3
212
Normal
0.3
148
Normal
0.3
534
Normal
0.3
286
Normal
0.3
574
Normal
0.3
228
Normal
0.3
394
Normal
0.3
922
Normal
0.3
422
Normal
0.3
546
Normal
0.3
1028
Normal
0.3
366
Normal
0.3
1014
Normal
0.3
278
Normal
0.3
984
Normal
0.3
642
Normal
0.3
416
Normal
0.3
172
Normal
0.3
964
Normal
0.3
916
Normal
0.3
376
Normal
0.3
636
Normal
0.3
536
Normal
0.3
342
Normal
0.3
564
Normal
0.3
484
Normal
0.3
568
Normal
0.3
982
Normal
0.3
114
Normal
0.3
558
Normal
0.3
852
Normal
0.3
874
Normal
0.3
392
Normal
0.3
328
Normal
0.3
368
Normal
0.3
868
Normal
0.3
344
Normal
0.3
722
Normal
0.3
384
Normal
0.3
311
Tumor
0.3
696
Normal
0.3
284
Normal
0.2
224
Normal
0.2
744
Normal
0.2
468
Normal
0.2
444
Normal
0.2
952
Normal
0.2
388
Normal
0.2
958
Normal
0.2
877
Tumor
0.2
954
Normal
0.2
364
Normal
0.2
488
Normal
0.2
268
Normal
0.2
478
Normal
0.2
448
Normal
0.2
823
Tumor
0.2
878
Normal
0.2
185
Tumor
0.2
924
Normal
0.2
492
Normal
0.2
672
Normal
0.2
214
Normal
0.2
918
Normal
0.2
516
Normal
0.2
976
Normal
0.2
627
Tumor
0.2
146
Normal
0.2
721
Tumor
0.1
554
Normal
0.1
498
Normal
0.1
524
Normal
0.1
491
Tumor
0.1
538
Normal
0.1
513
Tumor
0.1
213
Tumor
0.1
481
Tumor
0.1
112
Tumor
0.1
467
Tumor
0.1
724
Normal
0.1
447
Tumor
0.1
557
Tumor
0.1
285
Tumor
0.1
813
Tumor
0.1
195
Tumor
0.1
283
Tumor
0.0
727
Tumor
0.0
343
Tumor
0.0
617
Tumor
0.0
413
Tumor
0.0
421
Tumor
0.0
661
Tumor
0.0
535
Tumor
0.0
955
Tumor
0.0
227
Tumor
0.0
127
Tumor
0.0
387
Tumor
0.0
963
Tumor
-0.1
641
Tumor
-0.1
261
Tumor
-0.1
383
Tumor
-0.1
125
Tumor
-0.1
785
Tumor
-0.1
483
Tumor
-0.1
1031
Tumor
-0.1
943
Tumor
-0.1
415
Tumor
-0.1
975
Tumor
-0.1
461
Tumor
-0.1
715
Tumor
-0.1
363
Tumor
-0.1
137
Tumor
-0.1
563
Tumor
-0.1
867
Tumor
-0.1
145
Tumor
-0.1
455
Tumor
-0.1
863
Tumor
-0.1
493
Tumor
-0.1
191
Tumor
-0.1
391
Tumor
-0.1
861
Tumor
-0.1
881
Tumor
-0.1
671
Tumor
-0.1
271
Tumor
-0.2
713
Tumor
-0.2
171
Tumor
-0.2
967
Tumor
-0.2
367
Tumor
-0.2
1045
Tumor
-0.2
187
Tumor
-0.2
223
Tumor
-0.2
161
Tumor
-0.2
353
Tumor
-0.2
297
Tumor
-0.2
113
Tumor
-0.2
135
Tumor
-0.2
635
Tumor
-0.2
851
Tumor
-0.2
1041
Tumor
-0.2
817
Tumor
-0.2
615
Tumor
-0.2
395
Tumor
-0.2
471
Tumor
-0.2
341
Tumor
-0.2
1015
Tumor
-0.2
375
Tumor
-0.3
1025
Tumor
-0.3
925
Tumor
-0.3
857
Tumor
-0.3
433
Tumor
-0.3
697
Tumor
-0.3
385
Tumor
-0.3
451
Tumor
-0.3
977
Tumor
-0.3
327
Tumor
-0.3
221
Tumor
-0.3
865
Tumor
-0.3
147
Tumor
-0.3
741
Tumor
-0.3
537
Tumor
-0.3
815
Tumor
-0.3
141
Tumor
-0.3
883
Tumor
-0.3
365
Tumor
-0.3
1027
Tumor
-0.4
685
Tumor
-0.4
1043
Tumor
-0.4
517
Tumor
-0.4
425
Tumor
-0.4
331
Tumor
-0.4
545
Tumor
-0.4
1021
Tumor
-0.4
231
Tumor
-0.4
923
Tumor
-0.4
553
Tumor
-0.4
695
Tumor
-0.4
477
Tumor
-0.4
911
Tumor
-0.4
257
Tumor
-0.4
463
Tumor
-0.4
427
Tumor
-0.4
573
Tumor
-0.5
937
Tumor
-0.5
665
Tumor
-0.5
443
Tumor
-0.5
571
Tumor
-0.5
123
Tumor
-0.5
355
Tumor
-0.5
465
Tumor
-0.5
431
Tumor
-0.5
527
Tumor
-0.5
965
Tumor
-0.5
435
Tumor
-0.5
915
Tumor
-0.5
755
Tumor
-0.5
913
Tumor
-0.5
737
Tumor
-0.5
921
Tumor
-0.5
351
Tumor
-0.5
525
Tumor
-0.5
981
Tumor
-0.5
983
Tumor
-0.5
515
Tumor
-0.5
743
Tumor
-0.5
873
Tumor
-0.5
357
Tumor
-0.5
663
Tumor
-0.6
647
Tumor
-0.6
277
Tumor
-0.6
777
Tumor
-0.6
423
Tumor
-0.6
131
Tumor
-0.6
951
Tumor
-0.6
267
Tumor
-0.6
361
Tumor
-0.6
745
Tumor
-0.7
497
Tumor
-0.7
533
Tumor
-0.7
487
Tumor
-0.7
1013
Tumor
-0.8
567
Tumor
-0.8
523
Tumor
-0.8
313
Tumor
-0.8
953
Tumor
-0.9
445
Tumor
-0.9
473
Tumor
-0.9
957
Tumor
-0.9
411
Tumor
-0.9
393
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
