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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FNBP4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
5.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
4.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
4.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FNBP4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.7
Number of samples
231
Samples
Sample
Description
TPM
DO48732
0 years, male, NA, stage:3, alive, 630 days
66.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
60.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
57.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
53.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
52.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
48.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
47.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
43.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
42.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
39.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
39.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
39.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
38.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
38.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
37.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
36.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
36.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
36.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
35.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
33.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
32.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
31.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
30.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
29.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
29.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
29.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
28.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
27.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
26.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
22.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
22.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
22.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.1
161
Tumor
1.0
131
Tumor
0.8
523
Tumor
0.8
227
Tumor
0.7
727
Tumor
0.7
957
Tumor
0.7
425
Tumor
0.7
1013
Tumor
0.7
385
Tumor
0.7
724
Normal
0.6
387
Tumor
0.6
737
Tumor
0.6
743
Tumor
0.6
431
Tumor
0.6
477
Tumor
0.6
1021
Tumor
0.6
881
Tumor
0.6
427
Tumor
0.6
661
Tumor
0.6
471
Tumor
0.6
413
Tumor
0.5
463
Tumor
0.5
391
Tumor
0.5
211
Tumor
0.5
497
Tumor
0.5
525
Tumor
0.5
983
Tumor
0.5
411
Tumor
0.5
813
Tumor
0.5
467
Tumor
0.5
1031
Tumor
0.5
285
Tumor
0.5
491
Tumor
0.5
363
Tumor
0.4
647
Tumor
0.4
865
Tumor
0.4
313
Tumor
0.4
741
Tumor
0.4
951
Tumor
0.4
447
Tumor
0.4
478
Normal
0.4
487
Tumor
0.4
271
Tumor
0.4
975
Tumor
0.4
921
Tumor
0.4
777
Tumor
0.4
423
Tumor
0.4
917
Tumor
0.4
483
Tumor
0.4
923
Tumor
0.4
977
Tumor
0.4
517
Tumor
0.3
963
Tumor
0.3
851
Tumor
0.3
355
Tumor
0.3
535
Tumor
0.3
351
Tumor
0.3
883
Tumor
0.3
877
Tumor
0.3
814
Normal
0.3
367
Tumor
0.3
817
Tumor
0.3
815
Tumor
0.3
493
Tumor
0.3
873
Tumor
0.3
383
Tumor
0.3
1025
Tumor
0.3
375
Tumor
0.3
524
Normal
0.3
745
Tumor
0.3
715
Tumor
0.3
965
Tumor
0.2
185
Tumor
0.2
492
Normal
0.2
671
Tumor
0.2
695
Tumor
0.2
415
Tumor
0.2
943
Tumor
0.2
665
Tumor
0.2
187
Tumor
0.2
257
Tumor
0.2
393
Tumor
0.2
861
Tumor
0.2
937
Tumor
0.2
563
Tumor
0.2
123
Tumor
0.1
283
Tumor
0.1
481
Tumor
0.1
537
Tumor
0.1
455
Tumor
0.1
461
Tumor
0.1
465
Tumor
0.1
147
Tumor
0.1
1027
Tumor
0.1
635
Tumor
0.1
915
Tumor
0.1
698
Normal
0.1
913
Tumor
0.1
721
Tumor
0.1
361
Tumor
0.1
513
Tumor
0.1
482
Normal
0.1
954
Normal
0.1
857
Tumor
0.1
231
Tumor
0.1
435
Tumor
0.1
641
Tumor
0.1
221
Tumor
0.1
536
Normal
0.1
567
Tumor
0.1
384
Normal
0.1
213
Tumor
0.1
755
Tumor
0.1
953
Tumor
0.1
545
Tumor
0.1
297
Tumor
0.1
146
Normal
0.1
484
Normal
0.0
444
Normal
0.0
125
Tumor
0.0
364
Normal
0.0
785
Tumor
0.0
858
Normal
0.0
515
Tumor
0.0
663
Tumor
0.0
412
Normal
0.0
311
Tumor
0.0
1046
Normal
0.0
138
Normal
0.0
327
Tumor
0.0
141
Tumor
0.0
448
Normal
0.0
268
Normal
0.0
1043
Tumor
0.0
573
Tumor
0.0
916
Normal
0.0
498
Normal
0.0
533
Tumor
0.0
516
Normal
0.0
494
Normal
0.0
341
Tumor
0.0
976
Normal
0.0
925
Tumor
0.0
882
Normal
0.0
277
Tumor
0.0
534
Normal
0.0
414
Normal
0.0
1015
Tumor
0.0
518
Normal
0.0
426
Normal
0.0
863
Tumor
0.0
451
Tumor
0.0
132
Normal
0.0
926
Normal
0.0
421
Tumor
-0.1
874
Normal
-0.1
433
Tumor
-0.1
966
Normal
-0.1
852
Normal
-0.1
136
Normal
-0.1
984
Normal
-0.1
685
Tumor
-0.1
137
Tumor
-0.1
376
Normal
-0.1
472
Normal
-0.1
127
Tumor
-0.1
1044
Normal
-0.1
422
Normal
-0.1
365
Tumor
-0.1
416
Normal
-0.1
538
Normal
-0.1
924
Normal
-0.1
217
Tumor
-0.1
978
Normal
-0.1
716
Normal
-0.1
1014
Normal
-0.1
368
Normal
-0.1
356
Normal
-0.1
428
Normal
-0.1
884
Normal
-0.1
112
Tumor
-0.1
922
Normal
-0.1
956
Normal
-0.1
557
Tumor
-0.1
188
Normal
-0.1
424
Normal
-0.1
328
Normal
-0.1
526
Normal
-0.1
553
Tumor
-0.1
312
Normal
-0.1
456
Normal
-0.1
258
Normal
-0.1
878
Normal
-0.1
714
Normal
-0.1
824
Normal
-0.1
958
Normal
-0.1
615
Tumor
-0.1
918
Normal
-0.1
867
Tumor
-0.1
395
Tumor
-0.1
191
Tumor
-0.1
818
Normal
-0.1
912
Normal
-0.1
284
Normal
-0.1
571
Tumor
-0.1
866
Normal
-0.1
1045
Tumor
-0.1
672
Normal
-0.1
298
Normal
-0.1
686
Normal
-0.1
145
Tumor
-0.1
713
Tumor
-0.1
135
Tumor
-0.1
142
Normal
-0.1
914
Normal
-0.1
228
Normal
-0.1
564
Normal
-0.1
697
Tumor
-0.1
574
Normal
-0.1
468
Normal
-0.1
528
Normal
-0.2
546
Normal
-0.2
224
Normal
-0.2
514
Normal
-0.2
738
Normal
-0.2
744
Normal
-0.2
261
Tumor
-0.2
823
Tumor
-0.2
488
Normal
-0.2
171
Tumor
-0.2
864
Normal
-0.2
362
Normal
-0.2
662
Normal
-0.2
192
Normal
-0.2
952
Normal
-0.2
474
Normal
-0.2
1028
Normal
-0.2
778
Normal
-0.2
267
Tumor
-0.2
554
Normal
-0.2
982
Normal
-0.2
434
Normal
-0.2
232
Normal
-0.2
331
Tumor
-0.2
366
Normal
-0.2
981
Tumor
-0.2
862
Normal
-0.2
964
Normal
-0.2
742
Normal
-0.2
696
Normal
-0.2
464
Normal
-0.2
386
Normal
-0.2
314
Normal
-0.2
722
Normal
-0.2
462
Normal
-0.2
568
Normal
-0.2
944
Normal
-0.2
968
Normal
-0.2
396
Normal
-0.2
113
Tumor
-0.2
664
Normal
-0.2
286
Normal
-0.2
967
Tumor
-0.2
938
Normal
-0.2
262
Normal
-0.2
786
Normal
-0.2
558
Normal
-0.2
816
Normal
-0.3
728
Normal
-0.3
868
Normal
-0.3
617
Tumor
-0.3
162
Normal
-0.3
278
Normal
-0.3
527
Tumor
-0.3
648
Normal
-0.3
666
Normal
-0.3
332
Normal
-0.3
212
Normal
-0.3
272
Normal
-0.3
746
Normal
-0.3
1016
Normal
-0.3
126
Normal
-0.3
911
Tumor
-0.3
756
Normal
-0.3
446
Normal
-0.3
148
Normal
-0.3
628
Normal
-0.3
572
Normal
-0.3
443
Tumor
-0.3
466
Normal
-0.3
352
Normal
-0.3
955
Tumor
-0.3
452
Normal
-0.3
186
Normal
-0.3
172
Normal
-0.3
223
Tumor
-0.3
642
Normal
-0.3
616
Normal
-0.3
124
Normal
-0.3
1041
Tumor
-0.4
388
Normal
-0.4
343
Tumor
-0.4
723
Tumor
-0.4
357
Tumor
-0.4
627
Tumor
-0.4
445
Tumor
-0.4
618
Normal
-0.4
394
Normal
-0.4
392
Normal
-0.4
111
Normal
-0.4
195
Tumor
-0.4
114
Normal
-0.4
636
Normal
-0.4
1026
Normal
-0.4
1042
Normal
-0.4
1032
Normal
-0.4
128
Normal
-0.5
214
Normal
-0.5
432
Normal
-0.5
222
Normal
-0.5
1022
Normal
-0.5
196
Normal
-0.5
436
Normal
-0.5
218
Normal
-0.5
344
Normal
-0.5
353
Tumor
-0.6
354
Normal
-0.6
358
Normal
-0.6
342
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
