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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZPR1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
51.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
40.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
33.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
33.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
32.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
31.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
31.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
28.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
26.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
26.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
26.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.2
473
Tumor
1.0
951
Tumor
0.9
387
Tumor
0.9
227
Tumor
0.8
513
Tumor
0.8
1027
Tumor
0.8
135
Tumor
0.8
537
Tumor
0.8
865
Tumor
0.8
127
Tumor
0.8
1021
Tumor
0.8
925
Tumor
0.7
231
Tumor
0.7
745
Tumor
0.6
393
Tumor
0.6
697
Tumor
0.6
525
Tumor
0.6
1025
Tumor
0.6
573
Tumor
0.6
283
Tumor
0.5
483
Tumor
0.5
923
Tumor
0.5
147
Tumor
0.5
741
Tumor
0.5
331
Tumor
0.5
435
Tumor
0.5
533
Tumor
0.4
257
Tumor
0.4
535
Tumor
0.4
851
Tumor
0.4
737
Tumor
0.4
391
Tumor
0.4
131
Tumor
0.4
211
Tumor
0.4
351
Tumor
0.4
957
Tumor
0.4
1015
Tumor
0.4
817
Tumor
0.4
123
Tumor
0.4
363
Tumor
0.4
777
Tumor
0.3
661
Tumor
0.3
395
Tumor
0.3
755
Tumor
0.3
385
Tumor
0.3
465
Tumor
0.3
361
Tumor
0.3
431
Tumor
0.3
367
Tumor
0.3
863
Tumor
0.3
861
Tumor
0.3
313
Tumor
0.3
967
Tumor
0.2
217
Tumor
0.2
647
Tumor
0.2
921
Tumor
0.2
161
Tumor
0.2
943
Tumor
0.2
341
Tumor
0.2
727
Tumor
0.2
375
Tumor
0.2
563
Tumor
0.2
663
Tumor
0.2
455
Tumor
0.2
515
Tumor
0.2
671
Tumor
0.2
615
Tumor
0.2
913
Tumor
0.2
171
Tumor
0.2
915
Tumor
0.2
665
Tumor
0.2
443
Tumor
0.2
713
Tumor
0.2
425
Tumor
0.2
357
Tumor
0.2
567
Tumor
0.1
213
Tumor
0.1
1041
Tumor
0.1
311
Tumor
0.1
1045
Tumor
0.1
911
Tumor
0.1
635
Tumor
0.1
221
Tumor
0.1
523
Tumor
0.1
641
Tumor
0.1
1031
Tumor
0.1
917
Tumor
0.1
427
Tumor
0.1
185
Tumor
0.1
517
Tumor
0.1
553
Tumor
0.1
125
Tumor
0.1
355
Tumor
0.1
327
Tumor
0.1
497
Tumor
0.1
415
Tumor
0.1
471
Tumor
0.1
1043
Tumor
0.1
137
Tumor
0.1
724
Normal
0.1
977
Tumor
0.1
981
Tumor
0.0
964
Normal
0.0
421
Tumor
0.0
514
Normal
0.0
493
Tumor
0.0
366
Normal
0.0
451
Tumor
0.0
141
Tumor
0.0
527
Tumor
0.0
285
Tumor
0.0
785
Tumor
0.0
695
Tumor
0.0
965
Tumor
0.0
524
Normal
0.0
365
Tumor
0.0
557
Tumor
0.0
715
Tumor
0.0
978
Normal
0.0
477
Tumor
0.0
958
Normal
0.0
145
Tumor
0.0
815
Tumor
0.0
187
Tumor
0.0
195
Tumor
0.0
982
Normal
0.0
353
Tumor
0.0
823
Tumor
0.0
617
Tumor
0.0
983
Tumor
0.0
191
Tumor
0.0
516
Normal
-0.1
487
Tumor
-0.1
461
Tumor
-0.1
881
Tumor
-0.1
627
Tumor
-0.1
463
Tumor
-0.1
536
Normal
-0.1
966
Normal
-0.1
685
Tumor
-0.1
297
Tumor
-0.1
963
Tumor
-0.1
271
Tumor
-0.1
912
Normal
-0.1
223
Tumor
-0.1
728
Normal
-0.1
478
Normal
-0.1
571
Tumor
-0.1
413
Tumor
-0.1
447
Tumor
-0.1
1016
Normal
-0.1
955
Tumor
-0.1
113
Tumor
-0.1
444
Normal
-0.1
383
Tumor
-0.1
411
Tumor
-0.1
433
Tumor
-0.1
883
Tumor
-0.1
261
Tumor
-0.1
975
Tumor
-0.1
723
Tumor
-0.1
482
Normal
-0.1
481
Tumor
-0.1
423
Tumor
-0.1
814
Normal
-0.1
1026
Normal
-0.1
976
Normal
-0.1
738
Normal
-0.1
858
Normal
-0.2
1028
Normal
-0.2
1032
Normal
-0.2
364
Normal
-0.2
343
Tumor
-0.2
742
Normal
-0.2
128
Normal
-0.2
746
Normal
-0.2
877
Tumor
-0.2
968
Normal
-0.2
722
Normal
-0.2
518
Normal
-0.2
492
Normal
-0.2
867
Tumor
-0.2
376
Normal
-0.2
721
Tumor
-0.2
362
Normal
-0.2
984
Normal
-0.2
224
Normal
-0.2
546
Normal
-0.2
386
Normal
-0.2
672
Normal
-0.2
944
Normal
-0.2
1022
Normal
-0.2
448
Normal
-0.2
716
Normal
-0.2
953
Tumor
-0.2
267
Tumor
-0.2
824
Normal
-0.2
284
Normal
-0.2
696
Normal
-0.2
434
Normal
-0.2
498
Normal
-0.2
916
Normal
-0.2
491
Tumor
-0.2
1014
Normal
-0.2
538
Normal
-0.2
956
Normal
-0.2
494
Normal
-0.2
1042
Normal
-0.2
554
Normal
-0.2
384
Normal
-0.2
416
Normal
-0.2
756
Normal
-0.2
412
Normal
-0.2
954
Normal
-0.2
852
Normal
-0.2
474
Normal
-0.2
743
Tumor
-0.2
528
Normal
-0.2
666
Normal
-0.2
526
Normal
-0.2
114
Normal
-0.2
298
Normal
-0.3
422
Normal
-0.3
262
Normal
-0.3
328
Normal
-0.3
126
Normal
-0.3
112
Tumor
-0.3
472
Normal
-0.3
312
Normal
-0.3
142
Normal
-0.3
188
Normal
-0.3
914
Normal
-0.3
698
Normal
-0.3
714
Normal
-0.3
228
Normal
-0.3
1044
Normal
-0.3
456
Normal
-0.3
874
Normal
-0.3
616
Normal
-0.3
882
Normal
-0.3
212
Normal
-0.3
642
Normal
-0.3
394
Normal
-0.3
344
Normal
-0.3
368
Normal
-0.3
111
Normal
-0.3
124
Normal
-0.3
952
Normal
-0.3
664
Normal
-0.3
342
Normal
-0.3
864
Normal
-0.3
545
Tumor
-0.3
467
Tumor
-0.3
866
Normal
-0.3
868
Normal
-0.3
258
Normal
-0.3
138
Normal
-0.3
278
Normal
-0.3
558
Normal
-0.3
938
Normal
-0.3
744
Normal
-0.3
468
Normal
-0.3
466
Normal
-0.3
286
Normal
-0.3
446
Normal
-0.3
618
Normal
-0.3
232
Normal
-0.3
196
Normal
-0.3
818
Normal
-0.3
884
Normal
-0.3
1046
Normal
-0.3
146
Normal
-0.3
392
Normal
-0.3
778
Normal
-0.3
862
Normal
-0.3
464
Normal
-0.3
192
Normal
-0.4
352
Normal
-0.4
628
Normal
-0.4
926
Normal
-0.4
786
Normal
-0.4
314
Normal
-0.4
268
Normal
-0.4
136
Normal
-0.4
172
Normal
-0.4
922
Normal
-0.4
484
Normal
-0.4
356
Normal
-0.4
816
Normal
-0.4
162
Normal
-0.4
462
Normal
-0.4
662
Normal
-0.4
432
Normal
-0.4
574
Normal
-0.4
534
Normal
-0.4
277
Tumor
-0.4
332
Normal
-0.4
813
Tumor
-0.4
358
Normal
-0.4
878
Normal
-0.4
445
Tumor
-0.4
272
Normal
-0.4
924
Normal
-0.4
686
Normal
-0.4
388
Normal
-0.4
218
Normal
-0.4
488
Normal
-0.4
436
Normal
-0.4
214
Normal
-0.4
857
Tumor
-0.4
918
Normal
-0.4
222
Normal
-0.4
426
Normal
-0.4
873
Tumor
-0.4
148
Normal
-0.4
354
Normal
-0.4
414
Normal
-0.5
648
Normal
-0.5
572
Normal
-0.5
937
Tumor
-0.5
452
Normal
-0.5
568
Normal
-0.5
186
Normal
-0.5
424
Normal
-0.5
396
Normal
-0.5
428
Normal
-0.5
132
Normal
-0.5
564
Normal
-0.6
636
Normal
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
