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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Lens fiber cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
464.0
nTPM
GTEx:
464.0
nTPM
FANTOM5:
1569.8
Scaled Tags Per Million
Pig:
102.3
nTPM
Mouse:
6566.0
nTPM
EYE - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody CAB002053
Corneal epithelial cells
Not detected
Immunohistochemical staining of human eye shows strong cytoplasmic positivity in lens.
2 mm
Lens epithelial cells
Not detected
Lens fiber cells
High
EYE - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody CAB040560
Corneal epithelial cells
Not detected
Immunohistochemical staining of human eye shows strong cytoplasmic positivity in lens.
2 mm
Lens epithelial cells
Not detected
Lens fiber cells
High
EYE - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA057100
Corneal epithelial cells
Not detected
Immunohistochemical staining of human eye shows strong cytoplasmic positivity in lens fiber cells.
2 mm
Hyaloid membrane
Not detected
Lens epithelial cells
Not detected
Lens fiber cells
High
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
464.0
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 464.0
Samples: 105
Max nTPM: 1451.4
Min nTPM: 126.5
Std nTPM: 268.3
Median nTPM:
41_1
94 years, female
1451.4
173_1
67 years, male
1144.9
137_1
83 years, male
1141.4
394_1
75 years, female
1121.8
99_1
64 years, male
1106.6
308_1
70 years, female
1026.1
315_1
62 years, female
977.6
295_1
61 years, female
932.8
317_1
60 years, male
927.8
452_1
88 years, female
914.1
379_1
60 years, male
903.9
384_1
83 years, male
857.7
354_1
81 years, female
802.0
351_1
91 years, male
781.1
447_1
81 years, male
753.8
120_1
70 years, female
744.9
17_1
71 years, male
731.6
42_1
85 years, male
669.3
139_1
64 years, female
665.1
288_1
66 years, female
662.1
218_1
71 years, female
658.5
495_1
57 years, female
651.3
349_1
83 years, male
639.0
35_1
74 years, female
627.2
389_1
86 years, female
605.9
322_1
76 years, male
603.4
319_1
81 years, male
601.0
307_1
66 years, female
597.2
4_1
88 years, female
589.4
353_1
82 years, female
553.6
264_1
73 years, female
535.5
237_1
82 years, male
530.2
145_1
84 years, male
528.1
119_1
70 years, female
520.6
491_1
89 years, female
503.1
347_1
72 years, male
499.4
6_1
73 years, female
489.5
350_1
84 years, female
468.6
375_1
74 years, female
467.4
89_1
63 years, male
466.7
243_1
75 years, male
464.9
117_1
61 years, male
464.7
291_1
76 years, male
458.8
2_1
77 years, female
458.3
311_1
78 years, male
450.6
254_1
77 years, female
441.5
386_1
76 years, male
435.1
501_1
88 years, male
433.5
189_1
76 years, male
430.2
313_1
79 years, female
414.0
162_1
79 years, female
408.4
335_1
73 years, female
408.1
18_1
88 years, male
403.7
265_1
87 years, male
401.2
320_1
89 years, female
394.4
314_1
67 years, male
387.9
518_1
75 years, female
375.7
526_1
61 years, male
367.6
348_1
84 years, male
366.0
251_1
78 years, male
360.5
318_1
68 years, male
358.3
286_1
68 years, female
354.8
109_1
81 years, female
346.7
376_1
75 years, female
342.2
324_1
76 years, male
340.3
406_1
79 years, male
326.8
321_1
62 years, female
309.3
517_1
88 years, male
301.0
43_1
64 years, female
294.4
506_1
65 years, male
289.4
352_1
62 years, male
286.9
414_1
84 years, female
284.2
355_1
70 years, female
283.7
9_1
66 years, female
281.9
316_1
62 years, male
274.3
396_1
62 years, male
272.5
415_1
77 years, female
268.8
115_1
83 years, male
266.0
490_1
67 years, female
259.1
266_1
85 years, male
256.5
172_1
72 years, female
251.6
503_1
68 years, male
246.3
405_1
91 years, male
245.3
466_1
57 years, female
236.3
404_1
82 years, female
227.5
499_1
55 years, female
225.5
229_1
69 years, female
224.5
377_1
82 years, female
219.3
153_1
70 years, female
217.6
413_1
59 years, female
216.2
177_1
74 years, male
212.9
292_1
71 years, male
207.6
142_1
61 years, female
200.5
217_1
76 years, male
197.2
163_1
78 years, male
191.7
356_1
87 years, female
191.5
81_1
67 years, male
179.2
480_1
63 years, male
177.5
293_1
68 years, female
172.6
425_1
59 years, female
167.6
468_1
89 years, male
155.9
126_1
63 years, male
154.3
246_1
77 years, male
150.5
32_1
67 years, male
147.6
149_1
88 years, male
126.5
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.