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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
High
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1622.9
nTPM
HPA Brain:
1117.4
nTPM
GTEx:
1622.9
nTPM
FANTOM5:
2276.8
Scaled Tags Per Million
Pig:
497.7
nTPM
Mouse:
249.2
nTPM
Allen mouse:
7.4
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA057100
Antibody CAB002053
Antibody CAB040560
Glial cells
High
High
High
Neuronal cells
Not detected
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1117.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 965.6
2529
Female, age 94, left hemisphere
1377.1
1911
Female, age 85, right hemisphere
1010.2
2621
Female, age 67, right hemisphere
999.0
1855
Male, age 76, left hemisphere
853.9
1898
Male, age 80, left hemisphere
818.7
2148
Female, age 91, left hemisphere
734.5
Dentate gyrus nTPM: 860.3
2010
Male, age 76, both hemispheres
1389.8
2530
Female, age 94, left hemisphere
1045.8
2528
Male, age 74, both hemispheres
851.3
2246
Female, age 85, both hemispheres
757.2
2531
Female, age 67, both hemispheres
636.2
1927
Female, age 91, both hemispheres
481.7
Entorhinal gyrus nTPM: 849.4
2117
Female, age 91, right hemisphere
1499.6
2764
Male, age 80, right hemisphere
888.2
1787
Male, age 76, left hemisphere
863.7
2686
Male, age 75, right hemisphere
687.5
1938
Female, age 85, left hemisphere
647.0
2613
Female, age 94, left hemisphere
510.2
Hippocampus, CA1 nTPM: 718.6
2527
Male, age 74, both hemispheres
809.0
2045
Male, age 76, both hemispheres
798.4
2082
Female, age 91, right hemisphere
770.0
1873
Female, age 85, both hemispheres
757.6
2749
Male, age 80, left hemisphere
457.9
Hippocampus, CA2 nTPM: 817.7
2249
Male, age 74, both hemispheres
1116.4
2113
Female, age 91, right hemisphere
855.3
1963
Male, age 80, left hemisphere
835.3
1940
Female, age 85, left hemisphere
784.2
2437
Female, age 94, left hemisphere
733.4
1892
Male, age 76, both hemispheres
581.3
Hippocampus, CA3 nTPM: 705.8
1891
Female, age 85, both hemispheres
1120.4
1867
Male, age 76, both hemispheres
892.4
2620
Female, age 94, left hemisphere
768.4
2436
Male, age 74, both hemispheres
679.8
2137
Male, age 80, left hemisphere
407.9
2861
Female, age 67, both hemispheres
365.7
Parahippocampal cortex nTPM: 737.7
2018
Male, age 76, both hemispheres
1127.7
2532
Female, age 72, left hemisphere
1023.2
1990
Female, age 91, right hemisphere
855.1
2245
Female, age 91, both hemispheres
809.9
2692
Male, age 74, both hemispheres
808.3
1850
Male, age 80, both hemispheres
693.5
1933
Female, age 85, both hemispheres
620.7
2250
Female, age 67, right hemisphere
540.6
2622
Female, age 67, right hemisphere
452.0
2693
Female, age 94, both hemispheres
446.3
Perirhinal gyrus nTPM: 491.7
2521
Female, age 94, right hemisphere
637.9
2848
Male, age 76, right hemisphere
629.8
1794
Male, age 80, right hemisphere
432.3
1847
Female, age 91, left hemisphere
388.6
1841
Female, age 85, right hemisphere
370.2
Subiculum nTPM: 1117.4
2042
Male, age 76, both hemispheres
1683.7
1901
Male, age 80, both hemispheres
1307.9
2438
Female, age 94, left hemisphere
1053.5
1977
Female, age 85, both hemispheres
1003.3
2619
Male, age 74, both hemispheres
867.0
2729
Female, age 91, right hemisphere
788.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1622.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 1622.9
Samples: 197
Max nTPM: 6562.4
Min nTPM: 251.4
Std nTPM: 1074.2
Median nTPM: 1341.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
6562.4
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
6118.4
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
5567.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
5015.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
4749.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
4671.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
4515.5
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
4325.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
4313.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
4025.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
3533.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
3533.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
3451.8
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
3446.7
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
3432.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
3328.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
3256.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
3169.6
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
3123.5
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
2920.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
2904.9
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
2830.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
2801.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
2677.5
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
2649.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
2634.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
2606.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
2538.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
2490.1
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
2419.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
2414.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
2412.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
2382.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
2375.2
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
2366.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
2363.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
2313.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
2306.8
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
2295.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
2259.3
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
2168.4
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
2146.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
2117.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
2083.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
2051.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
2047.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
2016.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
2006.9
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
1951.5
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
1947.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
1905.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
1885.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
1867.5
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
1860.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
1851.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
1832.8
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
1828.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
1818.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
1799.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
1795.2
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
1776.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
1774.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
1753.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
1734.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
1730.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
1726.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
1705.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
1684.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
1677.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
1659.2
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
1645.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
1617.9
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
1617.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
1593.9
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
1593.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
1578.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
1571.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
1568.2
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
1533.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
1523.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
1521.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
1485.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
1484.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
1484.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
1481.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
1477.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
1476.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
1457.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
1446.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
1439.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
1418.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
1416.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
1412.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
1404.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
1386.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
1382.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
1367.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
1364.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
1341.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
1339.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
1320.8
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
1308.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
1305.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
1297.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
1297.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
1272.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
1251.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
1236.1
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
1230.1
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
1229.5
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
1226.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
1216.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
1200.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
1196.8
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
1184.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
1172.8
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
1164.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
1147.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
1144.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
1140.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
1134.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
1134.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
1124.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
1119.9
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
1116.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
1107.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
1107.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
1068.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
1067.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
1065.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
1065.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
1047.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
1041.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
1023.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
1001.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
995.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
992.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
971.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
965.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
942.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
941.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
941.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
928.7
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
922.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
916.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
915.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
913.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
906.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
893.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
892.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
873.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
871.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
870.0
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
861.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
858.3
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
851.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
837.0
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
821.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
820.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
806.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
803.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
794.3
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
792.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
784.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
777.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
760.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
757.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
753.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
729.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
724.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
721.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
721.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
708.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
703.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
694.3
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
690.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
666.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
666.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
659.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
657.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
632.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
602.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
598.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
592.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
568.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
558.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
545.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
510.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
460.2
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
443.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
435.2
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
416.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
415.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
404.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
384.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
309.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
251.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
249.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 163.2
Samples: 4
Max nTPM: 189.8
Min nTPM: 128.5
Sample A
Male
189.8
Sample B
Male
168.1
Sample C
Female
166.2
Sample D
Female
128.5
Hippocampal formation nTPM: 249.3
Samples: 4
Max nTPM: 355.1
Min nTPM: 186.9
Sample A
Male
186.9
Sample B
Male
200.5
Sample C
Female
355.1
Sample D
Female
254.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.