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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
2534.3
nTPM
HPA Brain:
2020.0
nTPM
GTEx:
2534.3
nTPM
FANTOM5:
9292.6
Scaled Tags Per Million
Pig:
854.7
nTPM
Mouse:
371.7
nTPM
Allen mouse:
12.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2020.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 1613.6
2666
Male, age 74, left hemisphere
2144.4
1870
Female, age 42, unknown
2103.7
1830
Male, age 51, unknown
1984.5
1833
Male, age 53, unknown
1954.8
2411
Female, age 72, unknown
1952.8
2019
Male, age 18, unknown
1695.5
2828
Female, age 72, unknown
1576.8
1827
Male, age 72, unknown
1059.6
2219
Male, age 76, both hemispheres
961.7
2586
Male, age 75, left hemisphere
702.3
Dorsal raphe nucleus nTPM: 1051.4
2750
Male, age 76, both hemispheres
1546.4
2016
Female, age 72, unknown
1195.3
1828
Male, age 53, unknown
1101.0
2298
Female, age 72, unknown
749.1
2047
Male, age 72, unknown
665.0
Inferior colliculus nTPM: 939.1
1848
Female, age 42, unknown
1032.4
2849
Male, age 72, unknown
960.5
1890
Male, age 53, unknown
931.9
2097
Female, age 72, unknown
831.7
Median raphe nucleus nTPM: 1289.5
2220
Male, age 76, midline
1289.5
Periaquaductal grey, anterior nTPM: 776.8
1947
Male, age 18, unknown
968.0
1795
Male, age 51, unknown
725.0
2502
Female, age 75, unknown
637.3
Periaquaductal grey, dorsal nTPM: 785.9
2464
Female, age 72, unknown
953.6
2850
Male, age 76, both hemispheres
917.3
1831
Male, age 72, unknown
886.9
1840
Male, age 53, unknown
385.9
Periaquaductal grey, lateral nTPM: 917.3
2053
Male, age 18, unknown
943.4
2272
Male, age 74, both hemispheres
913.1
2140
Male, age 76, both hemispheres
895.5
Pretectal area nTPM: 1022.6
1815
Male, age 53, unknown
1434.6
1817
Female, age 42, unknown
1271.0
2316
Male, age 76, right hemisphere
1102.3
2667
Female, age 75, unknown
1092.4
2273
Male, age 74, both hemispheres
1063.1
2407
Male, age 75, both hemispheres
1034.3
2825
Male, age 18, unknown
1003.8
2007
Male, age 72, unknown
952.2
2224
Female, age 72, unknown
915.0
1944
Female, age 72, unknown
762.0
1816
Male, age 51, unknown
617.6
Red nucleus nTPM: 2020.0
1821
Female, age 72, unknown
2620.5
1904
Male, age 53, unknown
2514.2
1865
Male, age 51, unknown
2495.6
1954
Female, age 42, unknown
2234.4
2227
Male, age 72, unknown
2232.9
2503
Female, age 72, unknown
2204.6
2769
Male, age 72, unknown
2184.2
2785
Male, age 18, unknown
2030.1
2823
Male, age 76, right hemisphere
1988.8
2725
Female, age 75, unknown
1356.5
2588
Male, age 74, left hemisphere
1274.0
2584
Male, age 75, left hemisphere
1104.0
Substantia nigra nTPM: 1148.1
2409
Female, age 72, unknown
1455.0
1851
Male, age 51, unknown
1413.5
1889
Female, age 72, unknown
1354.8
2699
Male, age 18, unknown
1272.2
2583
Male, age 75, right hemisphere
1139.0
1941
Male, age 53, unknown
1070.2
2590
Female, age 75, unknown
1061.3
2241
Male, age 72, unknown
1033.4
1916
Female, age 42, unknown
973.2
2665
Male, age 74, both hemispheres
708.1
Superior colliculus nTPM: 1317.4
1913
Female, age 42, unknown
2094.3
2668
Female, age 75, unknown
2041.7
1995
Male, age 72, unknown
1911.9
2587
Male, age 74, left hemisphere
1538.8
1839
Male, age 51, unknown
1247.2
1796
Male, age 53, unknown
1128.3
1895
Male, age 76, right hemisphere
889.6
2087
Female, age 72, unknown
853.1
2664
Male, age 75, both hemispheres
758.9
2261
Male, age 18, unknown
710.2
Ventral tegmental area nTPM: 1471.6
2223
Female, age 72, unknown
2410.6
2410
Female, age 72, unknown
1633.9
1915
Female, age 42, unknown
1268.3
2218
Male, age 76, both hemispheres
1207.4
2021
Male, age 53, unknown
1184.3
1942
Male, age 51, unknown
1124.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2534.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 2534.3
Samples: 139
Max nTPM: 8165.0
Min nTPM: 707.9
Std nTPM: 1578.7
Median nTPM: 2069.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
8165.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
7969.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
7832.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
7231.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
7162.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
6269.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
6219.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
6174.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
5644.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
5496.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
5476.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
5323.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
5027.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
4975.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
4808.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
4503.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
4267.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
3977.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
3836.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
3789.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
3774.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
3726.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
3666.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
3659.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
3643.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
3613.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
3579.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
3546.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
3400.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
3374.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
3352.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
3230.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
3179.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
3127.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
3108.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
3074.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
2964.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
2901.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
2872.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
2869.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
2854.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
2778.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
2769.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
2769.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
2764.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
2719.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
2682.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
2672.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
2668.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
2540.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
2468.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
2436.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
2392.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
2321.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
2312.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
2310.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
2310.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
2256.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
2242.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
2236.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
2218.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
2197.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
2191.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
2170.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
2128.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
2103.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
2099.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
2097.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
2095.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
2069.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
2065.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
2045.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
2006.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1963.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1930.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1878.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1874.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1873.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1868.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1867.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
1854.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
1842.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1835.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
1834.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1740.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1739.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1721.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1702.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1695.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1693.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1689.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
1688.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1682.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1681.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1661.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1643.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1622.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1593.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1563.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1561.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1542.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1529.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1518.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1512.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1506.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1492.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
1487.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1465.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
1425.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
1413.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1387.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
1386.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
1323.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
1300.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1291.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
1287.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
1278.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1241.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
1224.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1219.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1212.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
1172.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
1133.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1127.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
1103.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
1093.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1088.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
1082.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
1012.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
991.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
976.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
909.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
868.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
815.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
786.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
784.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
728.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
724.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
707.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
371.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 371.7
Samples: 4
Max nTPM: 403.8
Min nTPM: 340.0
Sample A
Male
355.1
Sample B
Male
340.0
Sample C
Female
387.9
Sample D
Female
403.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.