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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UFSP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UFSP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.3
Number of samples
231
Samples
Sample
Description
TPM
DO50814
0 years, male, NA, stage:3, alive, 420 days
54.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
43.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
42.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
38.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
38.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
37.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
37.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
37.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
35.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
32.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
30.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
23.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
741
Tumor
0.8
616
Normal
0.7
911
Tumor
0.7
128
Normal
0.7
314
Normal
0.7
867
Tumor
0.6
648
Normal
0.6
332
Normal
0.6
452
Normal
0.6
636
Normal
0.6
564
Normal
0.6
278
Normal
0.6
388
Normal
0.6
742
Normal
0.5
376
Normal
0.5
944
Normal
0.5
572
Normal
0.5
685
Tumor
0.5
298
Normal
0.5
868
Normal
0.5
922
Normal
0.5
1032
Normal
0.5
132
Normal
0.5
466
Normal
0.5
426
Normal
0.5
342
Normal
0.5
354
Normal
0.5
468
Normal
0.5
628
Normal
0.5
568
Normal
0.5
938
Normal
0.5
136
Normal
0.5
261
Tumor
0.5
664
Normal
0.5
666
Normal
0.5
672
Normal
0.5
422
Normal
0.5
148
Normal
0.5
448
Normal
0.5
214
Normal
0.5
368
Normal
0.4
358
Normal
0.4
924
Normal
0.4
618
Normal
0.4
662
Normal
0.4
698
Normal
0.4
312
Normal
0.4
862
Normal
0.4
356
Normal
0.4
111
Normal
0.4
196
Normal
0.4
124
Normal
0.4
746
Normal
0.4
223
Tumor
0.4
432
Normal
0.4
738
Normal
0.4
786
Normal
0.4
494
Normal
0.4
744
Normal
0.4
1022
Normal
0.4
232
Normal
0.4
866
Normal
0.4
172
Normal
0.4
914
Normal
0.4
558
Normal
0.4
138
Normal
0.4
464
Normal
0.4
696
Normal
0.4
114
Normal
0.4
414
Normal
0.4
142
Normal
0.4
451
Tumor
0.4
384
Normal
0.4
861
Tumor
0.4
1028
Normal
0.4
1046
Normal
0.4
981
Tumor
0.4
353
Tumor
0.4
642
Normal
0.4
186
Normal
0.4
918
Normal
0.4
723
Tumor
0.4
878
Normal
0.4
1014
Normal
0.4
912
Normal
0.4
272
Normal
0.4
884
Normal
0.4
394
Normal
0.4
546
Normal
0.4
984
Normal
0.4
864
Normal
0.4
1044
Normal
0.4
412
Normal
0.3
446
Normal
0.3
686
Normal
0.3
436
Normal
0.3
126
Normal
0.3
816
Normal
0.3
481
Tumor
0.3
228
Normal
0.3
162
Normal
0.3
716
Normal
0.3
362
Normal
0.3
284
Normal
0.3
445
Tumor
0.3
352
Normal
0.3
222
Normal
0.3
462
Normal
0.3
286
Normal
0.3
968
Normal
0.3
526
Normal
0.3
958
Normal
0.3
137
Tumor
0.3
755
Tumor
0.3
484
Normal
0.3
926
Normal
0.3
778
Normal
0.3
366
Normal
0.3
954
Normal
0.3
1026
Normal
0.3
714
Normal
0.3
756
Normal
0.3
976
Normal
0.3
1016
Normal
0.3
534
Normal
0.3
956
Normal
0.3
882
Normal
0.3
392
Normal
0.3
955
Tumor
0.3
146
Normal
0.3
396
Normal
0.3
528
Normal
0.3
262
Normal
0.3
488
Normal
0.3
328
Normal
0.2
824
Normal
0.2
113
Tumor
0.2
344
Normal
0.2
978
Normal
0.2
364
Normal
0.2
258
Normal
0.2
428
Normal
0.2
456
Normal
0.2
574
Normal
0.2
424
Normal
0.2
615
Tumor
0.2
1042
Normal
0.2
915
Tumor
0.2
416
Normal
0.2
982
Normal
0.2
188
Normal
0.2
212
Normal
0.2
818
Normal
0.2
472
Normal
0.2
518
Normal
0.2
1027
Tumor
0.2
474
Normal
0.2
1041
Tumor
0.2
964
Normal
0.2
514
Normal
0.2
852
Normal
0.2
745
Tumor
0.2
145
Tumor
0.2
482
Normal
0.2
952
Normal
0.2
858
Normal
0.2
218
Normal
0.2
135
Tumor
0.2
721
Tumor
0.2
327
Tumor
0.2
195
Tumor
0.2
966
Normal
0.1
492
Normal
0.1
523
Tumor
0.1
386
Normal
0.1
431
Tumor
0.1
538
Normal
0.1
874
Normal
0.1
187
Tumor
0.1
478
Normal
0.1
268
Normal
0.1
715
Tumor
0.1
467
Tumor
0.1
434
Normal
0.1
363
Tumor
0.1
161
Tumor
0.1
554
Normal
0.1
536
Normal
0.1
1025
Tumor
0.1
923
Tumor
0.1
663
Tumor
0.0
1015
Tumor
0.0
361
Tumor
0.0
617
Tumor
0.0
127
Tumor
0.0
728
Normal
0.0
192
Normal
0.0
395
Tumor
0.0
524
Normal
0.0
444
Normal
0.0
498
Normal
0.0
722
Normal
0.0
224
Normal
0.0
516
Normal
0.0
917
Tumor
0.0
953
Tumor
0.0
665
Tumor
0.0
785
Tumor
0.0
851
Tumor
0.0
557
Tumor
0.0
635
Tumor
-0.1
857
Tumor
-0.1
393
Tumor
-0.1
724
Normal
-0.1
487
Tumor
-0.1
815
Tumor
-0.1
311
Tumor
-0.1
112
Tumor
-0.1
913
Tumor
-0.1
641
Tumor
-0.1
331
Tumor
-0.1
365
Tumor
-0.1
491
Tumor
-0.1
383
Tumor
-0.1
435
Tumor
-0.1
447
Tumor
-0.2
537
Tumor
-0.2
563
Tumor
-0.2
415
Tumor
-0.2
427
Tumor
-0.2
535
Tumor
-0.2
267
Tumor
-0.2
877
Tumor
-0.2
171
Tumor
-0.2
463
Tumor
-0.2
387
Tumor
-0.2
191
Tumor
-0.2
497
Tumor
-0.2
977
Tumor
-0.2
865
Tumor
-0.2
313
Tumor
-0.2
916
Normal
-0.2
695
Tumor
-0.2
421
Tumor
-0.2
465
Tumor
-0.2
813
Tumor
-0.2
647
Tumor
-0.3
571
Tumor
-0.3
433
Tumor
-0.3
525
Tumor
-0.3
217
Tumor
-0.3
425
Tumor
-0.3
125
Tumor
-0.3
147
Tumor
-0.3
341
Tumor
-0.3
423
Tumor
-0.3
873
Tumor
-0.3
141
Tumor
-0.3
285
Tumor
-0.3
627
Tumor
-0.3
283
Tumor
-0.3
123
Tumor
-0.3
943
Tumor
-0.3
1043
Tumor
-0.3
697
Tumor
-0.3
391
Tumor
-0.4
573
Tumor
-0.4
921
Tumor
-0.4
1045
Tumor
-0.4
863
Tumor
-0.4
257
Tumor
-0.4
737
Tumor
-0.4
385
Tumor
-0.4
881
Tumor
-0.4
413
Tumor
-0.4
227
Tumor
-0.4
957
Tumor
-0.4
277
Tumor
-0.4
823
Tumor
-0.4
567
Tumor
-0.4
1021
Tumor
-0.4
357
Tumor
-0.4
351
Tumor
-0.4
375
Tumor
-0.4
713
Tumor
-0.4
814
Normal
-0.4
483
Tumor
-0.4
185
Tumor
-0.4
221
Tumor
-0.5
343
Tumor
-0.5
527
Tumor
-0.5
727
Tumor
-0.5
271
Tumor
-0.5
477
Tumor
-0.5
355
Tumor
-0.5
213
Tumor
-0.5
517
Tumor
-0.5
925
Tumor
-0.5
963
Tumor
-0.5
461
Tumor
-0.5
231
Tumor
-0.5
493
Tumor
-0.5
983
Tumor
-0.5
951
Tumor
-0.5
513
Tumor
-0.5
297
Tumor
-0.5
937
Tumor
-0.5
1031
Tumor
-0.5
367
Tumor
-0.6
131
Tumor
-0.6
1013
Tumor
-0.6
211
Tumor
-0.6
883
Tumor
-0.6
515
Tumor
-0.6
443
Tumor
-0.6
975
Tumor
-0.6
553
Tumor
-0.6
455
Tumor
-0.6
671
Tumor
-0.6
817
Tumor
-0.6
661
Tumor
-0.7
777
Tumor
-0.7
967
Tumor
-0.7
965
Tumor
-0.7
471
Tumor
-0.7
533
Tumor
-0.7
473
Tumor
-0.8
411
Tumor
-0.8
743
Tumor
-0.9
545
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
