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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH3D19 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
59.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
53.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
50.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
50.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
44.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
40.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
39.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
38.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
37.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
33.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
32.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
27.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
26.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
26.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
24.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH3D19 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.0
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
59.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
51.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
42.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
40.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
37.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
37.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
36.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
35.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
35.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
34.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
33.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
33.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
31.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
31.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
30.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
29.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
29.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
29.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
28.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
28.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
27.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
26.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
25.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
24.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
1.1
536
Normal
1.0
915
Tumor
0.7
817
Tumor
0.7
395
Tumor
0.7
498
Normal
0.7
478
Normal
0.6
455
Tumor
0.6
563
Tumor
0.6
444
Normal
0.6
852
Normal
0.6
916
Normal
0.6
881
Tumor
0.6
1027
Tumor
0.5
557
Tumor
0.5
492
Normal
0.5
477
Tumor
0.5
1025
Tumor
0.5
231
Tumor
0.5
857
Tumor
0.5
538
Normal
0.5
917
Tumor
0.5
1028
Normal
0.5
913
Tumor
0.5
984
Normal
0.5
874
Normal
0.4
1044
Normal
0.4
878
Normal
0.4
267
Tumor
0.4
641
Tumor
0.4
431
Tumor
0.4
867
Tumor
0.4
924
Normal
0.4
223
Tumor
0.4
715
Tumor
0.4
816
Normal
0.4
363
Tumor
0.3
447
Tumor
0.3
744
Normal
0.3
415
Tumor
0.3
137
Tumor
0.3
558
Normal
0.3
617
Tumor
0.3
386
Normal
0.3
956
Normal
0.3
954
Normal
0.3
785
Tumor
0.3
1045
Tumor
0.3
952
Normal
0.3
953
Tumor
0.3
224
Normal
0.3
955
Tumor
0.3
474
Normal
0.3
268
Normal
0.3
284
Normal
0.3
554
Normal
0.3
968
Normal
0.3
818
Normal
0.3
975
Tumor
0.3
285
Tumor
0.3
958
Normal
0.3
982
Normal
0.3
815
Tumor
0.3
868
Normal
0.3
524
Normal
0.3
187
Tumor
0.3
944
Normal
0.3
918
Normal
0.3
1042
Normal
0.3
523
Tumor
0.3
823
Tumor
0.3
392
Normal
0.2
882
Normal
0.2
527
Tumor
0.2
396
Normal
0.2
824
Normal
0.2
451
Tumor
0.2
957
Tumor
0.2
448
Normal
0.2
883
Tumor
0.2
642
Normal
0.2
461
Tumor
0.2
261
Tumor
0.2
383
Tumor
0.2
567
Tumor
0.2
572
Normal
0.2
421
Tumor
0.2
553
Tumor
0.2
628
Normal
0.2
922
Normal
0.2
491
Tumor
0.2
755
Tumor
0.2
484
Normal
0.2
355
Tumor
0.2
1046
Normal
0.2
574
Normal
0.2
443
Tumor
0.2
416
Normal
0.2
344
Normal
0.2
185
Tumor
0.2
884
Normal
0.2
412
Normal
0.2
981
Tumor
0.2
923
Tumor
0.2
862
Normal
0.2
925
Tumor
0.2
192
Normal
0.2
858
Normal
0.2
912
Normal
0.2
943
Tumor
0.2
546
Normal
0.2
471
Tumor
0.2
1014
Normal
0.2
635
Tumor
0.2
976
Normal
0.2
311
Tumor
0.2
866
Normal
0.2
864
Normal
0.2
228
Normal
0.2
473
Tumor
0.2
384
Normal
0.2
721
Tumor
0.2
911
Tumor
0.2
714
Normal
0.2
388
Normal
0.2
327
Tumor
0.2
937
Tumor
0.2
1015
Tumor
0.2
364
Normal
0.2
938
Normal
0.2
145
Tumor
0.2
746
Normal
0.2
362
Normal
0.2
516
Normal
0.1
814
Normal
0.1
472
Normal
0.1
627
Tumor
0.1
977
Tumor
0.1
488
Normal
0.1
195
Tumor
0.1
861
Tumor
0.1
786
Normal
0.1
138
Normal
0.1
351
Tumor
0.1
361
Tumor
0.1
966
Normal
0.1
135
Tumor
0.1
214
Normal
0.1
352
Normal
0.1
716
Normal
0.1
778
Normal
0.1
494
Normal
0.1
218
Normal
0.1
368
Normal
0.1
141
Tumor
0.1
696
Normal
0.1
212
Normal
0.1
446
Normal
0.1
188
Normal
0.1
697
Tumor
0.1
434
Normal
0.1
664
Normal
0.1
467
Tumor
0.1
978
Normal
0.1
394
Normal
0.1
528
Normal
0.1
686
Normal
0.1
618
Normal
0.1
262
Normal
0.1
487
Tumor
0.1
672
Normal
0.1
914
Normal
0.1
636
Normal
0.1
222
Normal
0.1
493
Tumor
0.1
124
Normal
0.1
481
Tumor
0.1
1016
Normal
0.1
534
Normal
0.1
525
Tumor
0.1
698
Normal
0.1
1032
Normal
0.1
742
Normal
0.1
213
Tumor
0.1
1022
Normal
0.1
616
Normal
0.1
422
Normal
0.1
526
Normal
0.1
298
Normal
0.0
286
Normal
0.0
813
Tumor
0.0
328
Normal
0.0
366
Normal
0.0
191
Tumor
0.0
518
Normal
0.0
425
Tumor
0.0
468
Normal
0.0
1043
Tumor
0.0
146
Normal
0.0
376
Normal
0.0
297
Tumor
0.0
426
Normal
0.0
515
Tumor
0.0
662
Normal
0.0
483
Tumor
0.0
951
Tumor
0.0
723
Tumor
0.0
568
Normal
0.0
564
Normal
0.0
452
Normal
0.0
738
Normal
0.0
615
Tumor
0.0
1026
Normal
0.0
375
Tumor
0.0
873
Tumor
0.0
126
Normal
0.0
728
Normal
0.0
232
Normal
0.0
365
Tumor
0.0
354
Normal
0.0
921
Tumor
0.0
356
Normal
0.0
964
Normal
0.0
385
Tumor
0.0
436
Normal
0.0
221
Tumor
0.0
741
Tumor
0.0
413
Tumor
0.0
258
Normal
-0.1
114
Normal
-0.1
428
Normal
-0.1
462
Normal
-0.1
722
Normal
-0.1
513
Tumor
-0.1
756
Normal
-0.1
545
Tumor
-0.1
112
Tumor
-0.1
136
Normal
-0.1
113
Tumor
-0.1
196
Normal
-0.1
533
Tumor
-0.1
482
Normal
-0.1
142
Normal
-0.1
148
Normal
-0.1
132
Normal
-0.1
983
Tumor
-0.1
514
Normal
-0.1
128
Normal
-0.1
963
Tumor
-0.1
161
Tumor
-0.1
272
Normal
-0.1
713
Tumor
-0.1
648
Normal
-0.1
424
Normal
-0.1
466
Normal
-0.1
926
Normal
-0.1
211
Tumor
-0.1
666
Normal
-0.1
343
Tumor
-0.1
456
Normal
-0.1
427
Tumor
-0.1
172
Normal
-0.1
342
Normal
-0.1
433
Tumor
-0.1
111
Normal
-0.1
332
Normal
-0.2
314
Normal
-0.2
423
Tumor
-0.2
414
Normal
-0.2
497
Tumor
-0.2
278
Normal
-0.2
671
Tumor
-0.2
312
Normal
-0.2
353
Tumor
-0.2
535
Tumor
-0.2
463
Tumor
-0.2
1021
Tumor
-0.2
283
Tumor
-0.2
217
Tumor
-0.2
851
Tumor
-0.2
367
Tumor
-0.2
125
Tumor
-0.2
186
Normal
-0.2
464
Normal
-0.2
745
Tumor
-0.2
685
Tumor
-0.3
162
Normal
-0.3
131
Tumor
-0.3
445
Tumor
-0.3
967
Tumor
-0.3
331
Tumor
-0.3
277
Tumor
-0.3
1013
Tumor
-0.3
432
Normal
-0.3
227
Tumor
-0.3
127
Tumor
-0.3
517
Tumor
-0.3
123
Tumor
-0.3
863
Tumor
-0.3
573
Tumor
-0.3
865
Tumor
-0.3
257
Tumor
-0.3
695
Tumor
-0.3
737
Tumor
-0.3
171
Tumor
-0.3
387
Tumor
-0.4
435
Tumor
-0.4
147
Tumor
-0.4
271
Tumor
-0.4
341
Tumor
-0.4
647
Tumor
-0.4
358
Normal
-0.4
877
Tumor
-0.4
1031
Tumor
-0.4
393
Tumor
-0.4
537
Tumor
-0.4
777
Tumor
-0.4
663
Tumor
-0.5
965
Tumor
-0.5
465
Tumor
-0.5
665
Tumor
-0.6
313
Tumor
-0.6
743
Tumor
-0.6
391
Tumor
-0.7
724
Normal
-0.7
727
Tumor
-0.7
571
Tumor
-0.8
411
Tumor
-0.8
357
Tumor
-0.8
661
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
