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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
50.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ANXA10 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.7
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
258.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
74.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
65.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
60.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
57.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
55.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
54.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
47.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
47.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
44.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
41.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
39.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
37.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
36.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
35.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
34.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
33.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
32.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
30.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
30.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
28.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
25.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
25.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
24.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
3.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
311
Tumor
4.1
128
Normal
1.5
172
Normal
1.3
111
Normal
1.3
132
Normal
1.3
136
Normal
1.2
114
Normal
1.2
186
Normal
1.2
515
Tumor
1.2
436
Normal
1.2
386
Normal
1.1
452
Normal
1.1
138
Normal
1.1
126
Normal
1.1
188
Normal
1.1
162
Normal
1.1
1027
Tumor
1.1
396
Normal
0.9
124
Normal
0.9
142
Normal
0.9
272
Normal
0.8
137
Tumor
0.8
218
Normal
0.8
148
Normal
0.8
627
Tumor
0.8
464
Normal
0.8
434
Normal
0.8
258
Normal
0.7
366
Normal
0.7
394
Normal
0.7
342
Normal
0.7
1026
Normal
0.7
145
Tumor
0.7
456
Normal
0.7
196
Normal
0.7
816
Normal
0.7
358
Normal
0.7
141
Tumor
0.7
952
Normal
0.7
388
Normal
0.7
426
Normal
0.6
878
Normal
0.6
146
Normal
0.6
746
Normal
0.6
185
Tumor
0.6
874
Normal
0.6
222
Normal
0.6
213
Tumor
0.6
365
Tumor
0.6
262
Normal
0.6
1028
Normal
0.6
112
Tumor
0.6
867
Tumor
0.6
445
Tumor
0.6
615
Tumor
0.6
423
Tumor
0.5
738
Normal
0.5
518
Normal
0.5
268
Normal
0.5
368
Normal
0.5
432
Normal
0.5
466
Normal
0.5
344
Normal
0.5
353
Tumor
0.5
1043
Tumor
0.5
392
Normal
0.5
913
Tumor
0.5
914
Normal
0.5
455
Tumor
0.5
642
Normal
0.4
422
Normal
0.4
468
Normal
0.4
298
Normal
0.4
955
Tumor
0.4
1016
Normal
0.4
232
Normal
0.4
474
Normal
0.4
861
Tumor
0.4
618
Normal
0.4
362
Normal
0.4
446
Normal
0.4
278
Normal
0.4
648
Normal
0.4
462
Normal
0.4
376
Normal
0.4
448
Normal
0.4
192
Normal
0.4
332
Normal
0.4
465
Tumor
0.4
924
Normal
0.3
742
Normal
0.3
1022
Normal
0.3
517
Tumor
0.3
728
Normal
0.3
866
Normal
0.3
416
Normal
0.3
328
Normal
0.3
228
Normal
0.3
882
Normal
0.3
431
Tumor
0.3
698
Normal
0.3
261
Tumor
0.3
981
Tumor
0.3
778
Normal
0.3
662
Normal
0.2
953
Tumor
0.2
286
Normal
0.2
314
Normal
0.2
915
Tumor
0.2
516
Normal
0.2
433
Tumor
0.2
574
Normal
0.2
461
Tumor
0.2
523
Tumor
0.2
414
Normal
0.2
428
Normal
0.2
862
Normal
0.2
331
Tumor
0.2
472
Normal
0.2
744
Normal
0.2
147
Tumor
0.2
123
Tumor
0.2
864
Normal
0.2
865
Tumor
0.1
777
Tumor
0.1
513
Tumor
0.1
956
Normal
0.1
737
Tumor
0.1
444
Normal
0.1
873
Tumor
0.1
214
Normal
0.1
755
Tumor
0.1
357
Tumor
0.1
412
Normal
0.1
938
Normal
0.1
361
Tumor
0.1
982
Normal
0.1
161
Tumor
0.1
571
Tumor
0.1
484
Normal
0.1
568
Normal
0.1
327
Tumor
0.1
1045
Tumor
0.0
664
Normal
0.0
125
Tumor
0.0
187
Tumor
0.0
966
Normal
0.0
785
Tumor
0.0
554
Normal
0.0
356
Normal
0.0
363
Tumor
0.0
918
Normal
0.0
526
Normal
0.0
714
Normal
0.0
387
Tumor
0.0
284
Normal
0.0
824
Normal
0.0
977
Tumor
-0.1
364
Normal
-0.1
911
Tumor
-0.1
852
Normal
-0.1
858
Normal
-0.1
546
Normal
-0.1
695
Tumor
-0.1
723
Tumor
-0.1
212
Normal
-0.1
567
Tumor
-0.1
481
Tumor
-0.1
127
Tumor
-0.1
944
Normal
-0.1
312
Normal
-0.1
277
Tumor
-0.1
538
Normal
-0.1
696
Normal
-0.1
722
Normal
-0.1
534
Normal
-0.1
976
Normal
-0.1
823
Tumor
-0.1
113
Tumor
-0.1
171
Tumor
-0.2
297
Tumor
-0.2
217
Tumor
-0.2
443
Tumor
-0.2
477
Tumor
-0.2
727
Tumor
-0.2
745
Tumor
-0.2
285
Tumor
-0.2
912
Normal
-0.2
716
Normal
-0.2
884
Normal
-0.2
494
Normal
-0.2
663
Tumor
-0.2
352
Normal
-0.2
564
Normal
-0.2
686
Normal
-0.2
786
Normal
-0.2
231
Tumor
-0.2
482
Normal
-0.2
488
Normal
-0.2
367
Tumor
-0.2
313
Tumor
-0.2
492
Normal
-0.2
223
Tumor
-0.2
424
Normal
-0.2
435
Tumor
-0.2
883
Tumor
-0.3
756
Normal
-0.3
195
Tumor
-0.3
271
Tumor
-0.3
925
Tumor
-0.3
922
Normal
-0.3
916
Normal
-0.3
451
Tumor
-0.3
857
Tumor
-0.3
1015
Tumor
-0.3
267
Tumor
-0.3
354
Normal
-0.3
421
Tumor
-0.3
498
Normal
-0.3
563
Tumor
-0.3
415
Tumor
-0.3
391
Tumor
-0.4
968
Normal
-0.4
814
Normal
-0.4
1041
Tumor
-0.4
943
Tumor
-0.4
813
Tumor
-0.4
393
Tumor
-0.4
666
Normal
-0.4
868
Normal
-0.4
818
Normal
-0.4
411
Tumor
-0.4
741
Tumor
-0.4
224
Normal
-0.4
375
Tumor
-0.4
383
Tumor
-0.4
257
Tumor
-0.4
211
Tumor
-0.5
881
Tumor
-0.5
384
Normal
-0.5
917
Tumor
-0.5
227
Tumor
-0.5
557
Tumor
-0.5
341
Tumor
-0.5
528
Normal
-0.5
447
Tumor
-0.5
1014
Normal
-0.5
221
Tumor
-0.5
514
Normal
-0.5
923
Tumor
-0.5
715
Tumor
-0.5
954
Normal
-0.6
617
Tumor
-0.6
536
Normal
-0.6
984
Normal
-0.6
964
Normal
-0.6
877
Tumor
-0.6
636
Normal
-0.6
817
Tumor
-0.6
355
Tumor
-0.6
1032
Normal
-0.6
558
Normal
-0.7
467
Tumor
-0.7
921
Tumor
-0.7
524
Normal
-0.7
1013
Tumor
-0.7
135
Tumor
-0.7
191
Tumor
-0.7
491
Tumor
-0.7
1042
Normal
-0.7
628
Normal
-0.7
395
Tumor
-0.7
926
Normal
-0.7
983
Tumor
-0.7
572
Normal
-0.7
863
Tumor
-0.7
553
Tumor
-0.8
463
Tumor
-0.8
937
Tumor
-0.8
478
Normal
-0.8
958
Normal
-0.8
483
Tumor
-0.8
661
Tumor
-0.8
471
Tumor
-0.8
533
Tumor
-0.9
743
Tumor
-0.9
413
Tumor
-0.9
493
Tumor
-0.9
343
Tumor
-0.9
685
Tumor
-0.9
385
Tumor
-0.9
967
Tumor
-0.9
283
Tumor
-0.9
721
Tumor
-0.9
713
Tumor
-0.9
537
Tumor
-1.0
963
Tumor
-1.0
525
Tumor
-1.0
975
Tumor
-1.0
1044
Normal
-1.0
672
Normal
-1.0
724
Normal
-1.0
1025
Tumor
-1.1
665
Tumor
-1.1
487
Tumor
-1.1
1046
Normal
-1.1
815
Tumor
-1.1
851
Tumor
-1.1
671
Tumor
-1.1
351
Tumor
-1.1
951
Tumor
-1.1
427
Tumor
-1.2
1031
Tumor
-1.2
647
Tumor
-1.2
965
Tumor
-1.3
957
Tumor
-1.3
573
Tumor
-1.4
616
Normal
-1.4
497
Tumor
-1.5
425
Tumor
-1.5
545
Tumor
-1.5
978
Normal
-1.6
641
Tumor
-1.6
697
Tumor
-1.6
473
Tumor
-1.7
535
Tumor
-1.7
635
Tumor
-1.8
1021
Tumor
-2.1
527
Tumor
-2.2
131
Tumor
-2.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
