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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WFS1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
81.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
80.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
45.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
41.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
31.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
29.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
27.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
20.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
18.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WFS1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
49.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
39.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
36.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
727
Tumor
2.2
745
Tumor
2.0
983
Tumor
1.9
231
Tumor
1.9
351
Tumor
1.6
1027
Tumor
1.4
641
Tumor
1.3
567
Tumor
1.2
813
Tumor
1.1
363
Tumor
1.0
877
Tumor
0.9
951
Tumor
0.9
223
Tumor
0.9
451
Tumor
0.9
925
Tumor
0.8
553
Tumor
0.8
617
Tumor
0.7
915
Tumor
0.7
1043
Tumor
0.7
171
Tumor
0.6
937
Tumor
0.6
965
Tumor
0.6
697
Tumor
0.6
981
Tumor
0.6
385
Tumor
0.6
737
Tumor
0.6
331
Tumor
0.6
383
Tumor
0.5
367
Tumor
0.5
815
Tumor
0.5
427
Tumor
0.5
817
Tumor
0.5
861
Tumor
0.5
421
Tumor
0.5
127
Tumor
0.5
313
Tumor
0.4
1025
Tumor
0.4
192
Normal
0.4
113
Tumor
0.4
463
Tumor
0.4
635
Tumor
0.4
537
Tumor
0.4
967
Tumor
0.4
415
Tumor
0.4
661
Tumor
0.4
135
Tumor
0.4
1021
Tumor
0.4
923
Tumor
0.3
525
Tumor
0.3
221
Tumor
0.3
1045
Tumor
0.3
443
Tumor
0.3
455
Tumor
0.3
536
Normal
0.3
147
Tumor
0.3
823
Tumor
0.3
327
Tumor
0.3
353
Tumor
0.2
285
Tumor
0.2
814
Normal
0.2
391
Tumor
0.2
191
Tumor
0.2
311
Tumor
0.2
473
Tumor
0.2
393
Tumor
0.2
257
Tumor
0.2
445
Tumor
0.2
195
Tumor
0.2
671
Tumor
0.2
563
Tumor
0.2
721
Tumor
0.2
863
Tumor
0.2
395
Tumor
0.2
1015
Tumor
0.2
261
Tumor
0.2
491
Tumor
0.2
368
Normal
0.1
283
Tumor
0.1
145
Tumor
0.1
535
Tumor
0.1
713
Tumor
0.1
982
Normal
0.1
341
Tumor
0.1
554
Normal
0.1
361
Tumor
0.1
187
Tumor
0.1
647
Tumor
0.1
984
Normal
0.1
943
Tumor
0.1
126
Normal
0.1
396
Normal
0.1
435
Tumor
0.1
344
Normal
0.0
572
Normal
0.0
387
Tumor
0.0
227
Tumor
0.0
277
Tumor
0.0
297
Tumor
0.0
672
Normal
0.0
386
Normal
0.0
865
Tumor
0.0
431
Tumor
0.0
212
Normal
0.0
916
Normal
0.0
911
Tumor
0.0
918
Normal
0.0
516
Normal
0.0
977
Tumor
0.0
1014
Normal
0.0
123
Tumor
0.0
392
Normal
0.0
487
Tumor
0.0
1044
Normal
0.0
857
Tumor
0.0
686
Normal
0.0
112
Tumor
0.0
446
Normal
0.0
627
Tumor
0.0
524
Normal
0.0
352
Normal
-0.1
148
Normal
-0.1
538
Normal
-0.1
1022
Normal
-0.1
394
Normal
-0.1
314
Normal
-0.1
574
Normal
-0.1
968
Normal
-0.1
1016
Normal
-0.1
376
Normal
-0.1
665
Tumor
-0.1
213
Tumor
-0.1
332
Normal
-0.1
188
Normal
-0.1
125
Tumor
-0.1
958
Normal
-0.1
921
Tumor
-0.1
412
Normal
-0.1
434
Normal
-0.1
268
Normal
-0.1
514
Normal
-0.1
217
Tumor
-0.1
913
Tumor
-0.1
534
Normal
-0.1
111
Normal
-0.1
278
Normal
-0.1
1026
Normal
-0.1
284
Normal
-0.1
375
Tumor
-0.1
917
Tumor
-0.1
724
Normal
-0.1
211
Tumor
-0.1
478
Normal
-0.1
523
Tumor
-0.1
467
Tumor
-0.1
738
Normal
-0.1
481
Tumor
-0.1
978
Normal
-0.1
558
Normal
-0.1
471
Tumor
-0.1
1013
Tumor
-0.1
786
Normal
-0.1
628
Normal
-0.1
224
Normal
-0.1
873
Tumor
-0.1
444
Normal
-0.1
466
Normal
-0.2
755
Tumor
-0.2
881
Tumor
-0.2
1042
Normal
-0.2
493
Tumor
-0.2
456
Normal
-0.2
384
Normal
-0.2
447
Tumor
-0.2
573
Tumor
-0.2
785
Tumor
-0.2
1032
Normal
-0.2
214
Normal
-0.2
852
Normal
-0.2
642
Normal
-0.2
528
Normal
-0.2
267
Tumor
-0.2
433
Tumor
-0.2
636
Normal
-0.2
128
Normal
-0.2
527
Tumor
-0.2
343
Tumor
-0.2
354
Normal
-0.2
477
Tumor
-0.2
494
Normal
-0.2
498
Normal
-0.2
355
Tumor
-0.2
956
Normal
-0.2
1028
Normal
-0.2
664
Normal
-0.2
922
Normal
-0.2
258
Normal
-0.2
952
Normal
-0.2
618
Normal
-0.2
358
Normal
-0.2
662
Normal
-0.2
513
Tumor
-0.2
546
Normal
-0.2
944
Normal
-0.2
388
Normal
-0.2
312
Normal
-0.2
966
Normal
-0.2
685
Tumor
-0.2
744
Normal
-0.2
976
Normal
-0.2
124
Normal
-0.2
571
Tumor
-0.2
426
Normal
-0.2
816
Normal
-0.3
975
Tumor
-0.3
422
Normal
-0.3
185
Tumor
-0.3
866
Normal
-0.3
342
Normal
-0.3
497
Tumor
-0.3
696
Normal
-0.3
874
Normal
-0.3
162
Normal
-0.3
955
Tumor
-0.3
924
Normal
-0.3
416
Normal
-0.3
138
Normal
-0.3
114
Normal
-0.3
716
Normal
-0.3
232
Normal
-0.3
778
Normal
-0.3
146
Normal
-0.3
474
Normal
-0.3
1031
Tumor
-0.3
328
Normal
-0.3
186
Normal
-0.3
356
Normal
-0.3
366
Normal
-0.3
515
Tumor
-0.3
867
Tumor
-0.3
142
Normal
-0.3
698
Normal
-0.3
172
Normal
-0.3
533
Tumor
-0.3
818
Normal
-0.3
526
Normal
-0.3
364
Normal
-0.3
228
Normal
-0.3
436
Normal
-0.3
488
Normal
-0.3
262
Normal
-0.3
424
Normal
-0.3
938
Normal
-0.3
851
Tumor
-0.3
452
Normal
-0.3
616
Normal
-0.3
464
Normal
-0.3
723
Tumor
-0.3
218
Normal
-0.3
615
Tumor
-0.4
728
Normal
-0.4
298
Normal
-0.4
492
Normal
-0.4
648
Normal
-0.4
926
Normal
-0.4
666
Normal
-0.4
432
Normal
-0.4
357
Tumor
-0.4
286
Normal
-0.4
365
Tumor
-0.4
964
Normal
-0.4
482
Normal
-0.4
742
Normal
-0.4
362
Normal
-0.4
568
Normal
-0.4
714
Normal
-0.4
954
Normal
-0.4
272
Normal
-0.4
413
Tumor
-0.4
864
Normal
-0.4
196
Normal
-0.4
564
Normal
-0.4
161
Tumor
-0.4
414
Normal
-0.4
472
Normal
-0.4
741
Tumor
-0.4
132
Normal
-0.4
428
Normal
-0.4
484
Normal
-0.4
957
Tumor
-0.4
756
Normal
-0.4
663
Tumor
-0.4
868
Normal
-0.4
746
Normal
-0.4
862
Normal
-0.4
545
Tumor
-0.4
222
Normal
-0.4
448
Normal
-0.4
518
Normal
-0.5
137
Tumor
-0.5
271
Tumor
-0.5
963
Tumor
-0.5
824
Normal
-0.5
743
Tumor
-0.5
882
Normal
-0.5
136
Normal
-0.5
468
Normal
-0.5
517
Tumor
-0.5
1041
Tumor
-0.5
912
Normal
-0.5
914
Normal
-0.6
1046
Normal
-0.6
878
Normal
-0.6
722
Normal
-0.6
884
Normal
-0.6
715
Tumor
-0.6
425
Tumor
-0.6
858
Normal
-0.6
141
Tumor
-0.6
423
Tumor
-0.7
483
Tumor
-0.7
131
Tumor
-0.7
777
Tumor
-0.7
411
Tumor
-0.8
462
Normal
-0.8
461
Tumor
-0.8
557
Tumor
-0.8
883
Tumor
-0.9
465
Tumor
-0.9
695
Tumor
-1.0
953
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
