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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNF330 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
33.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
31.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
28.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
26.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNF330 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.0
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
36.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
32.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
31.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
31.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
31.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
30.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
30.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
26.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
25.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
20.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
222
Normal
0.8
436
Normal
0.7
882
Normal
0.7
451
Tumor
0.7
342
Normal
0.7
884
Normal
0.6
426
Normal
0.6
912
Normal
0.6
524
Normal
0.6
554
Normal
0.6
952
Normal
0.6
915
Tumor
0.6
965
Tumor
0.6
446
Normal
0.6
376
Normal
0.6
434
Normal
0.5
911
Tumor
0.5
698
Normal
0.5
528
Normal
0.5
196
Normal
0.5
824
Normal
0.5
746
Normal
0.5
136
Normal
0.5
366
Normal
0.5
968
Normal
0.5
162
Normal
0.5
568
Normal
0.5
564
Normal
0.5
218
Normal
0.5
232
Normal
0.5
878
Normal
0.5
818
Normal
0.5
148
Normal
0.5
964
Normal
0.5
195
Tumor
0.5
538
Normal
0.5
858
Normal
0.5
664
Normal
0.5
422
Normal
0.5
186
Normal
0.5
456
Normal
0.5
466
Normal
0.4
534
Normal
0.4
161
Tumor
0.4
851
Tumor
0.4
352
Normal
0.4
1016
Normal
0.4
358
Normal
0.4
432
Normal
0.4
536
Normal
0.4
428
Normal
0.4
272
Normal
0.4
365
Tumor
0.4
518
Normal
0.4
214
Normal
0.4
283
Tumor
0.4
516
Normal
0.4
258
Normal
0.4
778
Normal
0.4
368
Normal
0.4
574
Normal
0.4
354
Normal
0.4
958
Normal
0.4
617
Tumor
0.4
132
Normal
0.4
1022
Normal
0.4
141
Tumor
0.4
1046
Normal
0.4
526
Normal
0.3
966
Normal
0.3
816
Normal
0.3
344
Normal
0.3
852
Normal
0.3
546
Normal
0.3
113
Tumor
0.3
137
Tumor
0.3
1032
Normal
0.3
914
Normal
0.3
223
Tumor
0.3
262
Normal
0.3
661
Tumor
0.3
172
Normal
0.3
1042
Normal
0.3
414
Normal
0.3
648
Normal
0.3
462
Normal
0.3
468
Normal
0.3
976
Normal
0.3
697
Tumor
0.3
467
Tumor
0.3
1044
Normal
0.3
618
Normal
0.3
146
Normal
0.3
913
Tumor
0.3
1041
Tumor
0.3
981
Tumor
0.3
445
Tumor
0.3
261
Tumor
0.3
278
Normal
0.3
188
Normal
0.3
642
Normal
0.3
138
Normal
0.3
211
Tumor
0.3
514
Normal
0.3
128
Normal
0.2
1026
Normal
0.2
413
Tumor
0.2
482
Normal
0.2
448
Normal
0.2
142
Normal
0.2
114
Normal
0.2
955
Tumor
0.2
866
Normal
0.2
926
Normal
0.2
464
Normal
0.2
636
Normal
0.2
452
Normal
0.2
572
Normal
0.2
363
Tumor
0.2
957
Tumor
0.2
111
Normal
0.2
474
Normal
0.2
635
Tumor
0.2
662
Normal
0.2
395
Tumor
0.2
444
Normal
0.2
487
Tumor
0.1
392
Normal
0.1
192
Normal
0.1
756
Normal
0.1
472
Normal
0.1
714
Normal
0.1
268
Normal
0.1
353
Tumor
0.1
396
Normal
0.1
394
Normal
0.1
862
Normal
0.1
424
Normal
0.1
285
Tumor
0.1
386
Normal
0.1
537
Tumor
0.1
124
Normal
0.1
535
Tumor
0.1
187
Tumor
0.1
412
Normal
0.1
666
Normal
0.1
616
Normal
0.1
473
Tumor
0.1
874
Normal
0.1
463
Tumor
0.1
1014
Normal
0.1
393
Tumor
0.1
384
Normal
0.1
755
Tumor
0.1
864
Normal
0.1
327
Tumor
0.1
523
Tumor
0.1
696
Normal
0.1
628
Normal
0.0
745
Tumor
0.0
217
Tumor
0.0
388
Normal
0.0
228
Normal
0.0
145
Tumor
0.0
881
Tumor
0.0
126
Normal
0.0
481
Tumor
0.0
672
Normal
0.0
982
Normal
0.0
125
Tumor
0.0
362
Normal
0.0
722
Normal
0.0
135
Tumor
0.0
978
Normal
0.0
191
Tumor
0.0
447
Tumor
0.0
1028
Normal
0.0
212
Normal
0.0
567
Tumor
0.0
364
Normal
0.0
527
Tumor
0.0
461
Tumor
0.0
857
Tumor
0.0
343
Tumor
0.0
391
Tumor
0.0
515
Tumor
0.0
492
Normal
0.0
1015
Tumor
-0.1
558
Normal
-0.1
478
Normal
-0.1
951
Tumor
-0.1
484
Normal
-0.1
956
Normal
-0.1
387
Tumor
-0.1
938
Normal
-0.1
984
Normal
-0.1
922
Normal
-0.1
786
Normal
-0.1
284
Normal
-0.1
147
Tumor
-0.1
267
Tumor
-0.1
298
Normal
-0.1
443
Tumor
-0.1
663
Tumor
-0.1
817
Tumor
-0.1
785
Tumor
-0.1
917
Tumor
-0.1
355
Tumor
-0.1
423
Tumor
-0.1
918
Normal
-0.1
923
Tumor
-0.1
716
Normal
-0.1
361
Tumor
-0.1
351
Tumor
-0.1
686
Normal
-0.1
367
Tumor
-0.1
977
Tumor
-0.2
213
Tumor
-0.2
356
Normal
-0.2
385
Tumor
-0.2
465
Tumor
-0.2
921
Tumor
-0.2
488
Normal
-0.2
1025
Tumor
-0.2
813
Tumor
-0.2
411
Tumor
-0.2
868
Normal
-0.2
943
Tumor
-0.2
455
Tumor
-0.2
286
Normal
-0.2
823
Tumor
-0.2
497
Tumor
-0.2
615
Tumor
-0.2
416
Normal
-0.2
332
Normal
-0.2
924
Normal
-0.2
721
Tumor
-0.2
328
Normal
-0.2
433
Tumor
-0.2
815
Tumor
-0.3
112
Tumor
-0.3
967
Tumor
-0.3
525
Tumor
-0.3
983
Tumor
-0.3
375
Tumor
-0.3
257
Tumor
-0.3
421
Tumor
-0.3
545
Tumor
-0.3
513
Tumor
-0.3
415
Tumor
-0.3
883
Tumor
-0.3
1013
Tumor
-0.3
431
Tumor
-0.3
491
Tumor
-0.3
471
Tumor
-0.3
571
Tumor
-0.3
494
Normal
-0.3
231
Tumor
-0.3
975
Tumor
-0.3
123
Tumor
-0.3
937
Tumor
-0.3
185
Tumor
-0.3
944
Normal
-0.3
383
Tumor
-0.3
627
Tumor
-0.4
861
Tumor
-0.4
553
Tumor
-0.4
814
Normal
-0.4
331
Tumor
-0.4
427
Tumor
-0.4
715
Tumor
-0.4
963
Tumor
-0.4
357
Tumor
-0.4
477
Tumor
-0.4
312
Normal
-0.4
777
Tumor
-0.4
867
Tumor
-0.4
925
Tumor
-0.4
1045
Tumor
-0.4
297
Tumor
-0.4
557
Tumor
-0.4
493
Tumor
-0.4
916
Normal
-0.4
671
Tumor
-0.4
695
Tumor
-0.4
873
Tumor
-0.5
1021
Tumor
-0.5
341
Tumor
-0.5
425
Tumor
-0.5
224
Normal
-0.5
713
Tumor
-0.5
221
Tumor
-0.5
1027
Tumor
-0.5
498
Normal
-0.5
131
Tumor
-0.5
953
Tumor
-0.5
647
Tumor
-0.5
127
Tumor
-0.5
271
Tumor
-0.5
314
Normal
-0.6
877
Tumor
-0.6
533
Tumor
-0.6
483
Tumor
-0.6
563
Tumor
-0.6
517
Tumor
-0.7
1043
Tumor
-0.7
227
Tumor
-0.7
954
Normal
-0.7
313
Tumor
-0.7
1031
Tumor
-0.7
277
Tumor
-0.8
171
Tumor
-0.8
865
Tumor
-0.8
573
Tumor
-0.9
435
Tumor
-0.9
685
Tumor
-0.9
311
Tumor
-1.0
641
Tumor
-1.0
863
Tumor
-1.0
665
Tumor
-1.0
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
741
Tumor
N/A
742
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
