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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SUPT6H is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
62.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
50.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
42.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
41.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
41.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
40.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
38.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
37.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
32.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
31.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
31.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
31.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
30.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
30.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
29.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
28.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
28.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
23.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
22.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
18.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SUPT6H is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.2
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
49.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
47.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
45.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
43.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
41.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
41.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
41.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
39.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
38.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
34.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
34.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
34.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
33.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
33.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
32.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
31.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
31.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
29.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
29.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
29.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
28.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
28.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
27.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
26.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
25.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
23.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
23.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
22.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.2
967
Tumor
1.1
743
Tumor
0.9
695
Tumor
0.8
411
Tumor
0.8
357
Tumor
0.8
131
Tumor
0.7
351
Tumor
0.7
1013
Tumor
0.6
977
Tumor
0.6
497
Tumor
0.6
355
Tumor
0.6
865
Tumor
0.5
965
Tumor
0.5
951
Tumor
0.5
1031
Tumor
0.5
957
Tumor
0.5
331
Tumor
0.5
465
Tumor
0.5
877
Tumor
0.5
685
Tumor
0.5
227
Tumor
0.5
277
Tumor
0.5
923
Tumor
0.5
661
Tumor
0.4
313
Tumor
0.4
1021
Tumor
0.4
647
Tumor
0.4
523
Tumor
0.4
211
Tumor
0.4
221
Tumor
0.4
983
Tumor
0.4
981
Tumor
0.4
545
Tumor
0.4
883
Tumor
0.4
817
Tumor
0.4
921
Tumor
0.3
257
Tumor
0.3
431
Tumor
0.3
112
Tumor
0.3
943
Tumor
0.3
953
Tumor
0.3
463
Tumor
0.3
517
Tumor
0.3
443
Tumor
0.3
525
Tumor
0.3
571
Tumor
0.3
881
Tumor
0.3
423
Tumor
0.3
161
Tumor
0.3
537
Tumor
0.3
271
Tumor
0.3
975
Tumor
0.3
573
Tumor
0.2
477
Tumor
0.2
671
Tumor
0.2
413
Tumor
0.2
527
Tumor
0.2
937
Tumor
0.2
663
Tumor
0.2
715
Tumor
0.2
861
Tumor
0.2
285
Tumor
0.2
213
Tumor
0.2
445
Tumor
0.2
813
Tumor
0.2
283
Tumor
0.2
641
Tumor
0.2
171
Tumor
0.2
435
Tumor
0.2
727
Tumor
0.2
567
Tumor
0.2
125
Tumor
0.2
297
Tumor
0.2
147
Tumor
0.2
387
Tumor
0.2
425
Tumor
0.2
493
Tumor
0.2
367
Tumor
0.2
963
Tumor
0.2
375
Tumor
0.2
427
Tumor
0.2
185
Tumor
0.2
724
Normal
0.2
385
Tumor
0.2
814
Normal
0.2
917
Tumor
0.1
217
Tumor
0.1
361
Tumor
0.1
455
Tumor
0.1
467
Tumor
0.1
471
Tumor
0.1
741
Tumor
0.1
473
Tumor
0.1
267
Tumor
0.1
1025
Tumor
0.1
867
Tumor
0.1
535
Tumor
0.1
363
Tumor
0.1
925
Tumor
0.1
451
Tumor
0.1
515
Tumor
0.1
447
Tumor
0.1
721
Tumor
0.1
461
Tumor
0.1
524
Normal
0.1
113
Tumor
0.1
191
Tumor
0.1
433
Tumor
0.1
343
Tumor
0.1
1041
Tumor
0.1
123
Tumor
0.1
553
Tumor
0.1
341
Tumor
0.0
483
Tumor
0.0
873
Tumor
0.0
187
Tumor
0.0
415
Tumor
0.0
365
Tumor
0.0
195
Tumor
0.0
487
Tumor
0.0
395
Tumor
0.0
391
Tumor
0.0
488
Normal
0.0
978
Normal
0.0
311
Tumor
0.0
353
Tumor
0.0
686
Normal
0.0
635
Tumor
0.0
737
Tumor
0.0
815
Tumor
0.0
966
Normal
0.0
915
Tumor
0.0
192
Normal
0.0
1027
Tumor
0.0
498
Normal
0.0
141
Tumor
0.0
127
Tumor
0.0
851
Tumor
0.0
383
Tumor
0.0
534
Normal
0.0
563
Tumor
0.0
857
Tumor
0.0
665
Tumor
0.0
332
Normal
0.0
526
Normal
0.0
135
Tumor
0.0
744
Normal
0.0
492
Normal
0.0
218
Normal
0.0
964
Normal
0.0
713
Tumor
0.0
984
Normal
0.0
384
Normal
0.0
444
Normal
0.0
478
Normal
0.0
222
Normal
0.0
1014
Normal
0.0
572
Normal
0.0
354
Normal
-0.1
344
Normal
-0.1
196
Normal
-0.1
954
Normal
-0.1
698
Normal
-0.1
976
Normal
-0.1
314
Normal
-0.1
955
Tumor
-0.1
672
Normal
-0.1
434
Normal
-0.1
777
Tumor
-0.1
186
Normal
-0.1
393
Tumor
-0.1
484
Normal
-0.1
722
Normal
-0.1
162
Normal
-0.1
468
Normal
-0.1
536
Normal
-0.1
554
Normal
-0.1
558
Normal
-0.1
823
Tumor
-0.1
268
Normal
-0.1
564
Normal
-0.1
538
Normal
-0.1
146
Normal
-0.1
922
Normal
-0.1
364
Normal
-0.1
1045
Tumor
-0.1
352
Normal
-0.1
286
Normal
-0.1
421
Tumor
-0.1
513
Tumor
-0.1
124
Normal
-0.1
1015
Tumor
-0.1
714
Normal
-0.1
786
Normal
-0.1
142
Normal
-0.1
785
Tumor
-0.1
145
Tumor
-0.1
696
Normal
-0.1
376
Normal
-0.1
938
Normal
-0.1
926
Normal
-0.1
1026
Normal
-0.1
516
Normal
-0.1
148
Normal
-0.1
456
Normal
-0.1
1046
Normal
-0.1
882
Normal
-0.1
224
Normal
-0.1
1032
Normal
-0.1
557
Tumor
-0.1
568
Normal
-0.1
342
Normal
-0.1
968
Normal
-0.1
756
Normal
-0.1
958
Normal
-0.1
188
Normal
-0.1
464
Normal
-0.1
916
Normal
-0.1
212
Normal
-0.1
472
Normal
-0.1
482
Normal
-0.1
863
Tumor
-0.1
368
Normal
-0.1
1028
Normal
-0.1
518
Normal
-0.1
228
Normal
-0.1
284
Normal
-0.1
778
Normal
-0.1
514
Normal
-0.1
114
Normal
-0.1
298
Normal
-0.1
328
Normal
-0.1
422
Normal
-0.1
432
Normal
-0.1
466
Normal
-0.1
172
Normal
-0.1
278
Normal
-0.1
924
Normal
-0.1
866
Normal
-0.1
528
Normal
-0.1
312
Normal
-0.1
356
Normal
-0.1
716
Normal
-0.1
982
Normal
-0.1
412
Normal
-0.1
1042
Normal
-0.1
388
Normal
-0.1
262
Normal
-0.1
494
Normal
-0.2
1016
Normal
-0.2
862
Normal
-0.2
394
Normal
-0.2
918
Normal
-0.2
428
Normal
-0.2
491
Tumor
-0.2
126
Normal
-0.2
878
Normal
-0.2
574
Normal
-0.2
546
Normal
-0.2
912
Normal
-0.2
416
Normal
-0.2
214
Normal
-0.2
426
Normal
-0.2
223
Tumor
-0.2
232
Normal
-0.2
396
Normal
-0.2
392
Normal
-0.2
615
Tumor
-0.2
1022
Normal
-0.2
258
Normal
-0.2
858
Normal
-0.2
362
Normal
-0.2
358
Normal
-0.2
448
Normal
-0.2
697
Tumor
-0.2
666
Normal
-0.2
746
Normal
-0.2
664
Normal
-0.2
1043
Tumor
-0.2
424
Normal
-0.2
327
Tumor
-0.2
662
Normal
-0.2
944
Normal
-0.2
481
Tumor
-0.2
742
Normal
-0.2
914
Normal
-0.2
874
Normal
-0.2
386
Normal
-0.2
648
Normal
-0.2
128
Normal
-0.2
956
Normal
-0.2
462
Normal
-0.2
723
Tumor
-0.2
616
Normal
-0.2
111
Normal
-0.2
884
Normal
-0.2
138
Normal
-0.2
1044
Normal
-0.2
136
Normal
-0.2
272
Normal
-0.2
474
Normal
-0.2
852
Normal
-0.2
414
Normal
-0.2
738
Normal
-0.2
627
Tumor
-0.2
452
Normal
-0.2
864
Normal
-0.2
824
Normal
-0.2
728
Normal
-0.2
617
Tumor
-0.2
636
Normal
-0.2
261
Tumor
-0.2
755
Tumor
-0.2
952
Normal
-0.2
816
Normal
-0.2
137
Tumor
-0.3
868
Normal
-0.3
366
Normal
-0.3
913
Tumor
-0.3
231
Tumor
-0.3
745
Tumor
-0.3
446
Normal
-0.3
132
Normal
-0.3
818
Normal
-0.3
628
Normal
-0.3
618
Normal
-0.3
436
Normal
-0.3
642
Normal
-0.4
911
Tumor
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
