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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM97 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
49.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
225.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
222.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
194.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
179.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
179.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
171.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
163.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
163.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
161.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
148.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
145.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
143.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
140.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
139.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
138.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
133.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
131.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
130.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
126.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
123.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
122.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
122.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
119.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
118.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
116.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
115.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
114.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
112.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
109.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
106.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
105.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
105.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
105.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
100.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
99.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
99.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
96.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
96.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
95.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
94.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
94.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
93.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
93.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
92.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
91.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
90.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
90.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
89.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
89.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
89.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
87.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
86.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
86.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
84.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
83.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
81.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
80.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
78.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
78.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
77.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
77.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
77.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
77.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
77.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
76.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
76.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
75.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
73.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
72.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
71.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
71.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
71.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
70.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
70.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
69.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
69.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
69.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
68.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
67.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
66.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
66.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
65.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
65.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
65.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
63.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
63.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
62.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
62.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
62.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
62.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
62.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
61.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
61.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
61.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
61.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
61.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
61.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
61.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
60.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
60.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
59.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
59.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
59.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
59.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
58.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
58.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
58.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
56.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
56.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
55.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
55.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
55.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
55.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
55.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
54.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
54.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
54.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
53.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
53.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
53.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
53.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
52.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
52.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
51.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
51.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
50.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
50.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
50.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
50.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
50.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
50.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
49.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
49.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
49.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
49.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
49.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
49.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
49.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
49.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
48.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
48.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
48.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
48.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
48.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
47.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
47.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
47.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
47.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
47.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
47.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
47.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
47.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
45.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
45.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
45.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
45.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
45.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
44.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
44.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
43.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
43.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
43.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
43.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
43.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
43.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
43.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
43.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
43.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
42.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
42.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
42.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
41.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
41.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
41.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
41.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
41.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
40.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
40.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
39.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
39.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
38.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
38.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
38.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
37.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
37.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
37.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
37.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
37.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
37.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
37.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
37.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
36.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
36.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
36.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
35.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
35.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
35.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
34.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
34.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
34.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
34.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
34.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
34.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
33.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
33.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
33.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
32.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
32.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
31.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
31.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
31.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
31.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
31.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
30.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
30.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
29.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
29.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
29.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
28.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
28.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
28.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
27.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
27.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
27.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
26.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
26.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
26.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
26.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
25.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
25.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
25.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
24.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
23.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
23.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
23.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
22.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
21.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
21.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
20.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM97 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.9
Number of samples
231
Samples
Sample
Description
TPM
DO48741
0 years, male, NA, stage:3, alive, 240 days
239.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
189.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
148.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
127.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
125.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
113.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
108.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
108.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
102.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
100.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
98.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
92.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
91.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
90.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
89.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
87.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
86.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
84.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
83.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
82.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
80.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
79.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
79.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
76.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
76.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
75.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
75.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
75.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
74.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
74.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
71.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
71.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
71.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
70.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
69.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
69.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
69.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
68.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
68.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
66.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
65.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
64.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
64.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
63.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
62.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
62.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
62.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
61.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
59.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
59.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
59.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
59.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
58.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
58.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
56.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
56.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
56.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
55.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
54.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
54.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
53.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
53.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
51.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
51.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
50.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
50.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
50.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
50.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
50.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
49.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
49.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
49.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
48.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
48.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
48.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
46.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
46.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
46.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
45.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
44.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
44.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
44.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
44.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
43.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
43.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
42.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
42.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
41.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
41.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
41.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
40.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
39.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
39.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
39.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
39.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
39.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
39.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
38.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
38.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
38.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
38.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
37.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
37.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
37.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
37.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
37.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
36.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
36.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
36.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
36.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
36.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
36.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
35.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
34.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
34.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
34.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
33.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
32.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
32.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
32.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
32.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
32.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
31.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
30.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
29.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
29.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
28.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
27.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
27.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
27.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
26.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
25.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
25.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
24.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
313
Tumor
2.0
357
Tumor
1.7
445
Tumor
1.7
465
Tumor
1.4
361
Tumor
1.3
147
Tumor
1.1
695
Tumor
1.0
517
Tumor
0.9
257
Tumor
0.9
423
Tumor
0.9
277
Tumor
0.8
435
Tumor
0.8
953
Tumor
0.8
463
Tumor
0.8
1013
Tumor
0.8
635
Tumor
0.8
112
Tumor
0.8
571
Tumor
0.7
462
Normal
0.7
1027
Tumor
0.6
342
Normal
0.6
127
Tumor
0.6
341
Tumor
0.6
647
Tumor
0.5
427
Tumor
0.5
477
Tumor
0.5
267
Tumor
0.5
331
Tumor
0.5
411
Tumor
0.5
663
Tumor
0.5
358
Normal
0.5
161
Tumor
0.4
744
Normal
0.4
727
Tumor
0.4
452
Normal
0.4
567
Tumor
0.4
314
Normal
0.4
983
Tumor
0.4
436
Normal
0.4
332
Normal
0.4
443
Tumor
0.4
262
Normal
0.3
125
Tumor
0.3
366
Normal
0.3
298
Normal
0.3
967
Tumor
0.3
272
Normal
0.3
813
Tumor
0.3
114
Normal
0.3
483
Tumor
0.3
648
Normal
0.3
1022
Normal
0.3
258
Normal
0.3
388
Normal
0.3
1021
Tumor
0.2
354
Normal
0.2
391
Tumor
0.2
617
Tumor
0.2
392
Normal
0.2
375
Tumor
0.2
222
Normal
0.2
746
Normal
0.2
186
Normal
0.2
355
Tumor
0.2
111
Normal
0.2
615
Tumor
0.2
344
Normal
0.2
938
Normal
0.2
422
Normal
0.2
742
Normal
0.2
426
Normal
0.2
413
Tumor
0.2
642
Normal
0.2
421
Tumor
0.1
124
Normal
0.1
497
Tumor
0.1
815
Tumor
0.1
1026
Normal
0.1
878
Normal
0.1
424
Normal
0.1
394
Normal
0.1
432
Normal
0.1
376
Normal
0.1
618
Normal
0.1
882
Normal
0.1
433
Tumor
0.1
852
Normal
0.1
1046
Normal
0.1
481
Tumor
0.1
464
Normal
0.1
564
Normal
0.1
196
Normal
0.1
227
Tumor
0.0
128
Normal
0.0
278
Normal
0.0
616
Normal
0.0
745
Tumor
0.0
982
Normal
0.0
271
Tumor
0.0
533
Tumor
0.0
448
Normal
0.0
866
Normal
0.0
641
Tumor
0.0
351
Tumor
0.0
957
Tumor
0.0
132
Normal
0.0
231
Tumor
0.0
412
Normal
0.0
414
Normal
0.0
172
Normal
0.0
352
Normal
0.0
877
Tumor
0.0
383
Tumor
0.0
1014
Normal
0.0
232
Normal
0.0
356
Normal
0.0
963
Tumor
0.0
434
Normal
0.0
327
Tumor
0.0
428
Normal
0.0
365
Tumor
0.0
818
Normal
0.0
214
Normal
-0.1
393
Tumor
-0.1
162
Normal
-0.1
698
Normal
-0.1
964
Normal
-0.1
218
Normal
-0.1
912
Normal
-0.1
954
Normal
-0.1
142
Normal
-0.1
671
Tumor
-0.1
488
Normal
-0.1
353
Tumor
-0.1
824
Normal
-0.1
714
Normal
-0.1
456
Normal
-0.1
446
Normal
-0.1
362
Normal
-0.1
387
Tumor
-0.1
743
Tumor
-0.1
686
Normal
-0.1
523
Tumor
-0.1
113
Tumor
-0.1
1044
Normal
-0.1
1032
Normal
-0.1
716
Normal
-0.1
884
Normal
-0.1
171
Tumor
-0.1
722
Normal
-0.1
858
Normal
-0.1
728
Normal
-0.1
431
Tumor
-0.1
384
Normal
-0.2
368
Normal
-0.2
466
Normal
-0.2
862
Normal
-0.2
285
Tumor
-0.2
525
Tumor
-0.2
627
Tumor
-0.2
723
Tumor
-0.2
816
Normal
-0.2
851
Tumor
-0.2
546
Normal
-0.2
518
Normal
-0.2
363
Tumor
-0.2
228
Normal
-0.2
966
Normal
-0.2
568
Normal
-0.2
312
Normal
-0.2
482
Normal
-0.2
968
Normal
-0.2
534
Normal
-0.2
923
Tumor
-0.2
396
Normal
-0.2
738
Normal
-0.2
148
Normal
-0.2
472
Normal
-0.2
146
Normal
-0.2
425
Tumor
-0.2
1016
Normal
-0.2
213
Tumor
-0.2
1028
Normal
-0.2
664
Normal
-0.2
386
Normal
-0.2
487
Tumor
-0.2
636
Normal
-0.2
572
Normal
-0.3
268
Normal
-0.3
343
Tumor
-0.3
873
Tumor
-0.3
883
Tumor
-0.3
573
Tumor
-0.3
814
Normal
-0.3
185
Tumor
-0.3
537
Tumor
-0.3
138
Normal
-0.3
494
Normal
-0.3
956
Normal
-0.3
123
Tumor
-0.3
924
Normal
-0.3
865
Tumor
-0.3
136
Normal
-0.3
574
Normal
-0.3
223
Tumor
-0.3
863
Tumor
-0.3
981
Tumor
-0.3
662
Normal
-0.3
467
Tumor
-0.3
286
Normal
-0.3
661
Tumor
-0.4
914
Normal
-0.4
666
Normal
-0.4
874
Normal
-0.4
1045
Tumor
-0.4
468
Normal
-0.4
513
Tumor
-0.4
628
Normal
-0.4
696
Normal
-0.4
864
Normal
-0.4
922
Normal
-0.4
868
Normal
-0.4
141
Tumor
-0.4
297
Tumor
-0.4
284
Normal
-0.4
444
Normal
-0.4
192
Normal
-0.4
926
Normal
-0.4
224
Normal
-0.4
921
Tumor
-0.4
367
Tumor
-0.4
976
Normal
-0.4
944
Normal
-0.5
984
Normal
-0.5
484
Normal
-0.5
217
Tumor
-0.5
471
Tumor
-0.5
478
Normal
-0.5
526
Normal
-0.5
1043
Tumor
-0.5
778
Normal
-0.5
364
Normal
-0.5
978
Normal
-0.5
328
Normal
-0.5
952
Normal
-0.5
474
Normal
-0.5
955
Tumor
-0.5
187
Tumor
-0.5
195
Tumor
-0.5
958
Normal
-0.5
126
Normal
-0.5
672
Normal
-0.5
416
Normal
-0.5
1042
Normal
-0.5
261
Tumor
-0.6
498
Normal
-0.6
943
Tumor
-0.6
385
Tumor
-0.6
516
Normal
-0.6
447
Tumor
-0.6
741
Tumor
-0.6
1025
Tumor
-0.6
563
Tumor
-0.6
461
Tumor
-0.6
212
Normal
-0.6
131
Tumor
-0.6
528
Normal
-0.6
188
Normal
-0.6
937
Tumor
-0.6
685
Tumor
-0.6
786
Normal
-0.6
493
Tumor
-0.7
554
Normal
-0.7
867
Tumor
-0.7
1031
Tumor
-0.7
918
Normal
-0.7
756
Normal
-0.7
857
Tumor
-0.7
191
Tumor
-0.7
965
Tumor
-0.7
558
Normal
-0.7
977
Tumor
-0.7
137
Tumor
-0.7
415
Tumor
-0.7
514
Normal
-0.8
311
Tumor
-0.8
538
Normal
-0.8
135
Tumor
-0.8
492
Normal
-0.8
557
Tumor
-0.8
536
Normal
-0.9
737
Tumor
-0.9
145
Tumor
-0.9
535
Tumor
-0.9
524
Normal
-0.9
916
Normal
-0.9
861
Tumor
-0.9
785
Tumor
-1.0
491
Tumor
-1.0
455
Tumor
-1.0
451
Tumor
-1.0
951
Tumor
-1.0
755
Tumor
-1.0
527
Tumor
-1.0
721
Tumor
-1.0
515
Tumor
-1.0
911
Tumor
-1.0
913
Tumor
-1.0
823
Tumor
-1.1
715
Tumor
-1.1
975
Tumor
-1.1
1041
Tumor
-1.1
395
Tumor
-1.1
1015
Tumor
-1.1
665
Tumor
-1.2
915
Tumor
-1.3
724
Normal
-1.3
925
Tumor
-1.3
777
Tumor
-1.3
221
Tumor
-1.3
881
Tumor
-1.3
697
Tumor
-1.4
545
Tumor
-1.5
817
Tumor
-1.5
917
Tumor
-1.5
473
Tumor
-1.7
713
Tumor
-1.8
553
Tumor
-1.9
211
Tumor
-2.0
283
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
