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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DPH1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DPH1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.4
Number of samples
231
Samples
Sample
Description
TPM
DO45105
0 years, male, NA, stage:1, alive, 1680 days
49.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
49.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
42.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
39.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
38.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
38.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
37.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
37.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
36.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
35.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
34.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
34.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
34.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
34.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
34.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
34.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
34.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
33.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
33.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
33.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
33.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
33.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
32.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
31.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
31.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
30.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
29.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
29.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
27.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
26.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
25.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
25.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
23.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.0
865
Tumor
0.9
425
Tumor
0.9
327
Tumor
0.9
123
Tumor
0.8
957
Tumor
0.8
533
Tumor
0.7
647
Tumor
0.7
537
Tumor
0.7
685
Tumor
0.7
545
Tumor
0.6
387
Tumor
0.6
391
Tumor
0.6
567
Tumor
0.6
571
Tumor
0.6
951
Tumor
0.6
873
Tumor
0.6
965
Tumor
0.5
331
Tumor
0.5
745
Tumor
0.5
883
Tumor
0.5
663
Tumor
0.5
913
Tumor
0.5
367
Tumor
0.5
283
Tumor
0.5
191
Tumor
0.5
395
Tumor
0.4
815
Tumor
0.4
145
Tumor
0.4
573
Tumor
0.4
1015
Tumor
0.4
777
Tumor
0.4
925
Tumor
0.4
741
Tumor
0.4
171
Tumor
0.4
755
Tumor
0.4
1021
Tumor
0.4
465
Tumor
0.4
231
Tumor
0.4
535
Tumor
0.4
141
Tumor
0.4
426
Normal
0.4
911
Tumor
0.4
937
Tumor
0.3
393
Tumor
0.3
113
Tumor
0.3
648
Normal
0.3
112
Tumor
0.3
664
Normal
0.3
557
Tumor
0.3
314
Normal
0.3
697
Tumor
0.3
411
Tumor
0.3
513
Tumor
0.3
428
Normal
0.3
312
Normal
0.3
422
Normal
0.3
424
Normal
0.3
497
Tumor
0.3
616
Normal
0.3
695
Tumor
0.3
955
Tumor
0.3
665
Tumor
0.3
127
Tumor
0.2
534
Normal
0.2
257
Tumor
0.2
351
Tumor
0.2
666
Normal
0.2
261
Tumor
0.2
277
Tumor
0.2
617
Tumor
0.2
413
Tumor
0.2
563
Tumor
0.2
232
Normal
0.2
128
Normal
0.2
278
Normal
0.2
414
Normal
0.2
267
Tumor
0.2
627
Tumor
0.2
223
Tumor
0.2
956
Normal
0.2
467
Tumor
0.2
944
Normal
0.2
125
Tumor
0.2
661
Tumor
0.2
1045
Tumor
0.2
983
Tumor
0.2
427
Tumor
0.2
217
Tumor
0.2
423
Tumor
0.2
851
Tumor
0.2
135
Tumor
0.2
185
Tumor
0.2
943
Tumor
0.2
472
Normal
0.2
353
Tumor
0.2
394
Normal
0.2
738
Normal
0.2
366
Normal
0.2
446
Normal
0.2
527
Tumor
0.2
1027
Tumor
0.2
981
Tumor
0.2
1041
Tumor
0.2
443
Tumor
0.1
214
Normal
0.1
737
Tumor
0.1
114
Normal
0.1
635
Tumor
0.1
483
Tumor
0.1
462
Normal
0.1
332
Normal
0.1
618
Normal
0.1
482
Normal
0.1
431
Tumor
0.1
262
Normal
0.1
672
Normal
0.1
662
Normal
0.1
111
Normal
0.1
463
Tumor
0.1
222
Normal
0.1
742
Normal
0.1
147
Tumor
0.1
213
Tumor
0.1
342
Normal
0.1
218
Normal
0.1
341
Tumor
0.1
365
Tumor
0.1
436
Normal
0.1
388
Normal
0.1
698
Normal
0.1
196
Normal
0.1
574
Normal
0.1
357
Tumor
0.1
528
Normal
0.1
298
Normal
0.1
824
Normal
0.1
386
Normal
0.1
466
Normal
0.1
354
Normal
0.1
922
Normal
0.1
464
Normal
0.1
723
Tumor
0.1
451
Tumor
0.1
297
Tumor
0.1
313
Tumor
0.1
924
Normal
0.1
452
Normal
0.1
368
Normal
0.1
953
Tumor
0.1
786
Normal
0.1
448
Normal
0.1
728
Normal
0.1
468
Normal
0.1
722
Normal
0.1
221
Tumor
0.1
525
Tumor
0.1
392
Normal
0.1
435
Tumor
0.1
964
Normal
0.1
358
Normal
0.1
258
Normal
0.1
858
Normal
0.0
746
Normal
0.0
385
Tumor
0.0
474
Normal
0.0
926
Normal
0.0
272
Normal
0.0
1044
Normal
0.0
868
Normal
0.0
227
Tumor
0.0
958
Normal
0.0
816
Normal
0.0
212
Normal
0.0
1042
Normal
0.0
383
Tumor
0.0
461
Tumor
0.0
375
Tumor
0.0
195
Tumor
0.0
642
Normal
0.0
224
Normal
0.0
188
Normal
0.0
1016
Normal
0.0
918
Normal
0.0
356
Normal
0.0
1022
Normal
0.0
376
Normal
0.0
1046
Normal
0.0
484
Normal
0.0
421
Tumor
0.0
938
Normal
0.0
311
Tumor
0.0
1013
Tumor
0.0
456
Normal
0.0
344
Normal
0.0
433
Tumor
0.0
416
Normal
0.0
1026
Normal
0.0
284
Normal
0.0
628
Normal
0.0
285
Tumor
0.0
721
Tumor
0.0
727
Tumor
0.0
564
Normal
0.0
813
Tumor
0.0
481
Tumor
0.0
286
Normal
0.0
126
Normal
0.0
814
Normal
0.0
977
Tumor
0.0
328
Normal
0.0
162
Normal
0.0
912
Normal
0.0
228
Normal
0.0
352
Normal
0.0
818
Normal
0.0
494
Normal
0.0
546
Normal
0.0
914
Normal
0.0
1014
Normal
0.0
396
Normal
-0.1
558
Normal
-0.1
881
Tumor
-0.1
852
Normal
-0.1
192
Normal
-0.1
866
Normal
-0.1
343
Tumor
-0.1
724
Normal
-0.1
146
Normal
-0.1
916
Normal
-0.1
982
Normal
-0.1
862
Normal
-0.1
268
Normal
-0.1
361
Tumor
-0.1
952
Normal
-0.1
636
Normal
-0.1
554
Normal
-0.1
615
Tumor
-0.1
963
Tumor
-0.1
137
Tumor
-0.1
1032
Normal
-0.1
355
Tumor
-0.1
536
Normal
-0.1
744
Normal
-0.1
1043
Tumor
-0.1
1028
Normal
-0.1
714
Normal
-0.1
434
Normal
-0.1
785
Tumor
-0.1
132
Normal
-0.1
172
Normal
-0.1
696
Normal
-0.1
364
Normal
-0.1
671
Tumor
-0.1
915
Tumor
-0.1
432
Normal
-0.1
487
Tumor
-0.1
478
Normal
-0.1
884
Normal
-0.1
878
Normal
-0.1
975
Tumor
-0.1
526
Normal
-0.1
488
Normal
-0.1
877
Tumor
-0.1
477
Tumor
-0.1
136
Normal
-0.1
131
Tumor
-0.1
447
Tumor
-0.1
572
Normal
-0.1
954
Normal
-0.1
966
Normal
-0.1
384
Normal
-0.1
412
Normal
-0.1
186
Normal
-0.1
138
Normal
-0.1
362
Normal
-0.1
867
Tumor
-0.1
857
Tumor
-0.1
516
Normal
-0.2
874
Normal
-0.2
778
Normal
-0.2
148
Normal
-0.2
142
Normal
-0.2
568
Normal
-0.2
492
Normal
-0.2
864
Normal
-0.2
538
Normal
-0.2
498
Normal
-0.2
444
Normal
-0.2
743
Tumor
-0.2
124
Normal
-0.2
514
Normal
-0.2
882
Normal
-0.2
515
Tumor
-0.2
923
Tumor
-0.2
493
Tumor
-0.2
415
Tumor
-0.2
756
Normal
-0.2
445
Tumor
-0.2
518
Normal
-0.2
1031
Tumor
-0.2
491
Tumor
-0.2
641
Tumor
-0.2
976
Normal
-0.2
455
Tumor
-0.2
686
Normal
-0.2
716
Normal
-0.2
823
Tumor
-0.3
861
Tumor
-0.3
917
Tumor
-0.3
984
Normal
-0.3
978
Normal
-0.3
211
Tumor
-0.3
715
Tumor
-0.3
517
Tumor
-0.3
161
Tumor
-0.3
817
Tumor
-0.3
553
Tumor
-0.3
713
Tumor
-0.3
524
Normal
-0.3
471
Tumor
-0.3
921
Tumor
-0.3
187
Tumor
-0.4
363
Tumor
-0.4
1025
Tumor
-0.4
968
Normal
-0.5
271
Tumor
-0.6
523
Tumor
-0.6
863
Tumor
-0.7
967
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
