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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
4.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.2
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
1.5
147
Tumor
0.9
615
Tumor
0.9
367
Tumor
0.9
533
Tumor
0.8
697
Tumor
0.8
1013
Tumor
0.8
913
Tumor
0.8
313
Tumor
0.7
227
Tumor
0.7
257
Tumor
0.7
617
Tumor
0.7
357
Tumor
0.7
745
Tumor
0.6
135
Tumor
0.6
427
Tumor
0.5
1045
Tumor
0.5
813
Tumor
0.5
477
Tumor
0.5
573
Tumor
0.5
393
Tumor
0.5
571
Tumor
0.5
513
Tumor
0.5
965
Tumor
0.5
938
Normal
0.4
137
Tumor
0.4
435
Tumor
0.4
391
Tumor
0.4
537
Tumor
0.4
474
Normal
0.4
535
Tumor
0.4
563
Tumor
0.4
635
Tumor
0.4
951
Tumor
0.3
967
Tumor
0.3
224
Normal
0.3
267
Tumor
0.3
478
Normal
0.3
161
Tumor
0.3
527
Tumor
0.3
127
Tumor
0.3
341
Tumor
0.3
523
Tumor
0.3
1042
Normal
0.3
1041
Tumor
0.3
923
Tumor
0.3
525
Tumor
0.3
113
Tumor
0.3
212
Normal
0.3
944
Normal
0.3
884
Normal
0.3
228
Normal
0.2
953
Tumor
0.2
472
Normal
0.2
138
Normal
0.2
641
Tumor
0.2
672
Normal
0.2
387
Tumor
0.2
284
Normal
0.2
126
Normal
0.2
425
Tumor
0.2
421
Tumor
0.2
188
Normal
0.2
355
Tumor
0.2
1044
Normal
0.2
363
Tumor
0.2
132
Normal
0.1
445
Tumor
0.1
858
Normal
0.1
361
Tumor
0.1
223
Tumor
0.1
917
Tumor
0.1
462
Normal
0.1
538
Normal
0.1
187
Tumor
0.1
343
Tumor
0.1
258
Normal
0.1
514
Normal
0.1
574
Normal
0.1
665
Tumor
0.1
327
Tumor
0.1
727
Tumor
0.1
664
Normal
0.1
386
Normal
0.1
128
Normal
0.1
185
Tumor
0.1
662
Normal
0.1
434
Normal
0.1
171
Tumor
0.1
666
Normal
0.1
232
Normal
0.1
564
Normal
0.1
874
Normal
0.1
423
Tumor
0.1
268
Normal
0.1
647
Tumor
0.1
567
Tumor
0.1
352
Normal
0.1
286
Normal
0.1
123
Tumor
0.1
446
Normal
0.1
498
Normal
0.1
148
Normal
0.1
983
Tumor
0.1
867
Tumor
0.1
648
Normal
0.1
572
Normal
0.1
814
Normal
0.1
968
Normal
0.1
528
Normal
0.0
818
Normal
0.0
546
Normal
0.0
1032
Normal
0.0
162
Normal
0.0
1046
Normal
0.0
618
Normal
0.0
111
Normal
0.0
396
Normal
0.0
628
Normal
0.0
444
Normal
0.0
344
Normal
0.0
824
Normal
0.0
482
Normal
0.0
558
Normal
0.0
172
Normal
0.0
388
Normal
0.0
145
Tumor
0.0
616
Normal
0.0
455
Tumor
0.0
976
Normal
0.0
383
Tumor
0.0
911
Tumor
0.0
952
Normal
0.0
124
Normal
0.0
916
Normal
0.0
231
Tumor
0.0
852
Normal
0.0
136
Normal
0.0
433
Tumor
0.0
448
Normal
0.0
384
Normal
0.0
464
Normal
0.0
443
Tumor
0.0
661
Tumor
0.0
114
Normal
0.0
465
Tumor
0.0
125
Tumor
0.0
568
Normal
0.0
142
Normal
0.0
816
Normal
0.0
272
Normal
0.0
332
Normal
0.0
353
Tumor
0.0
354
Normal
0.0
186
Normal
0.0
984
Normal
0.0
977
Tumor
-0.1
375
Tumor
-0.1
557
Tumor
-0.1
663
Tumor
-0.1
918
Normal
-0.1
481
Tumor
-0.1
431
Tumor
-0.1
526
Normal
-0.1
278
Normal
-0.1
857
Tumor
-0.1
146
Normal
-0.1
786
Normal
-0.1
385
Tumor
-0.1
261
Tumor
-0.1
958
Normal
-0.1
954
Normal
-0.1
1016
Normal
-0.1
728
Normal
-0.1
912
Normal
-0.1
517
Tumor
-0.1
141
Tumor
-0.1
925
Tumor
-0.1
432
Normal
-0.1
364
Normal
-0.1
262
Normal
-0.1
436
Normal
-0.1
312
Normal
-0.1
545
Tumor
-0.1
394
Normal
-0.1
414
Normal
-0.1
447
Tumor
-0.1
483
Tumor
-0.1
392
Normal
-0.1
297
Tumor
-0.1
362
Normal
-0.1
487
Tumor
-0.1
878
Normal
-0.1
642
Normal
-0.1
943
Tumor
-0.1
376
Normal
-0.1
328
Normal
-0.1
468
Normal
-0.1
366
Normal
-0.1
466
Normal
-0.1
428
Normal
-0.1
743
Tumor
-0.1
922
Normal
-0.1
882
Normal
-0.1
524
Normal
-0.1
785
Tumor
-0.1
777
Tumor
-0.1
914
Normal
-0.2
627
Tumor
-0.2
494
Normal
-0.2
463
Tumor
-0.2
723
Tumor
-0.2
424
Normal
-0.2
314
Normal
-0.2
415
Tumor
-0.2
636
Normal
-0.2
1026
Normal
-0.2
426
Normal
-0.2
493
Tumor
-0.2
534
Normal
-0.2
738
Normal
-0.2
744
Normal
-0.2
356
Normal
-0.2
456
Normal
-0.2
112
Tumor
-0.2
756
Normal
-0.2
484
Normal
-0.2
671
Tumor
-0.2
982
Normal
-0.2
956
Normal
-0.2
491
Tumor
-0.2
554
Normal
-0.2
497
Tumor
-0.2
742
Normal
-0.2
331
Tumor
-0.2
716
Normal
-0.2
698
Normal
-0.2
926
Normal
-0.2
686
Normal
-0.2
395
Tumor
-0.2
298
Normal
-0.2
1028
Normal
-0.3
416
Normal
-0.3
488
Normal
-0.3
1022
Normal
-0.3
924
Normal
-0.3
283
Tumor
-0.3
755
Tumor
-0.3
864
Normal
-0.3
713
Tumor
-0.3
368
Normal
-0.3
978
Normal
-0.3
868
Normal
-0.3
271
Tumor
-0.3
451
Tumor
-0.3
964
Normal
-0.3
883
Tumor
-0.3
536
Normal
-0.3
685
Tumor
-0.3
365
Tumor
-0.3
285
Tumor
-0.3
714
Normal
-0.3
1027
Tumor
-0.3
722
Normal
-0.3
518
Normal
-0.3
1014
Normal
-0.3
411
Tumor
-0.3
741
Tumor
-0.3
737
Tumor
-0.4
778
Normal
-0.4
746
Normal
-0.4
471
Tumor
-0.4
358
Normal
-0.4
1043
Tumor
-0.4
553
Tumor
-0.4
342
Normal
-0.4
516
Normal
-0.4
311
Tumor
-0.4
963
Tumor
-0.4
921
Tumor
-0.4
412
Normal
-0.4
452
Normal
-0.4
817
Tumor
-0.4
492
Normal
-0.4
955
Tumor
-0.4
696
Normal
-0.4
851
Tumor
-0.4
413
Tumor
-0.4
957
Tumor
-0.4
1021
Tumor
-0.5
881
Tumor
-0.5
467
Tumor
-0.5
966
Normal
-0.5
865
Tumor
-0.5
873
Tumor
-0.5
915
Tumor
-0.5
277
Tumor
-0.5
863
Tumor
-0.6
715
Tumor
-0.6
866
Normal
-0.6
862
Normal
-0.6
461
Tumor
-0.6
877
Tumor
-0.6
1031
Tumor
-0.6
937
Tumor
-0.6
975
Tumor
-0.6
422
Normal
-0.6
823
Tumor
-0.7
695
Tumor
-0.7
1025
Tumor
-0.8
724
Normal
-0.8
211
Tumor
-0.9
721
Tumor
-0.9
515
Tumor
-0.9
815
Tumor
-1.0
1015
Tumor
-1.0
861
Tumor
-1.0
131
Tumor
-1.0
981
Tumor
-1.1
473
Tumor
-1.4
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
