We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP1R9B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
43.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
37.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
33.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
31.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP1R9B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.8
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
30.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
536
Normal
0.9
211
Tumor
0.8
492
Normal
0.8
498
Normal
0.8
917
Tumor
0.8
524
Normal
0.8
192
Normal
0.8
814
Normal
0.7
444
Normal
0.7
661
Tumor
0.7
311
Tumor
0.6
641
Tumor
0.6
978
Normal
0.6
434
Normal
0.6
943
Tumor
0.6
478
Normal
0.6
975
Tumor
0.6
447
Tumor
0.6
881
Tumor
0.6
467
Tumor
0.5
525
Tumor
0.5
538
Normal
0.5
415
Tumor
0.5
224
Normal
0.5
697
Tumor
0.5
535
Tumor
0.5
268
Normal
0.5
188
Normal
0.5
823
Tumor
0.5
343
Tumor
0.4
533
Tumor
0.4
386
Normal
0.4
958
Normal
0.4
455
Tumor
0.4
957
Tumor
0.4
185
Tumor
0.4
966
Normal
0.4
916
Normal
0.4
721
Tumor
0.4
951
Tumor
0.4
813
Tumor
0.4
516
Normal
0.4
1044
Normal
0.4
384
Normal
0.4
421
Tumor
0.4
852
Normal
0.4
563
Tumor
0.4
383
Tumor
0.4
1015
Tumor
0.4
297
Tumor
0.4
341
Tumor
0.4
195
Tumor
0.4
367
Tumor
0.3
385
Tumor
0.3
984
Normal
0.3
365
Tumor
0.3
672
Normal
0.3
1045
Tumor
0.3
976
Normal
0.3
213
Tumor
0.3
553
Tumor
0.3
778
Normal
0.3
413
Tumor
0.3
284
Normal
0.3
461
Tumor
0.3
867
Tumor
0.3
857
Tumor
0.3
513
Tumor
0.3
1031
Tumor
0.3
617
Tumor
0.3
545
Tumor
0.3
212
Normal
0.3
126
Normal
0.3
312
Normal
0.3
786
Normal
0.3
514
Normal
0.3
344
Normal
0.3
363
Tumor
0.3
952
Normal
0.3
558
Normal
0.3
146
Normal
0.3
1028
Normal
0.3
877
Tumor
0.3
364
Normal
0.3
1042
Normal
0.3
571
Tumor
0.3
724
Normal
0.3
427
Tumor
0.3
817
Tumor
0.3
262
Normal
0.3
526
Normal
0.3
671
Tumor
0.3
662
Normal
0.3
686
Normal
0.2
963
Tumor
0.2
554
Normal
0.2
954
Normal
0.2
456
Normal
0.2
217
Tumor
0.2
124
Normal
0.2
491
Tumor
0.2
967
Tumor
0.2
231
Tumor
0.2
368
Normal
0.2
218
Normal
0.2
493
Tumor
0.2
883
Tumor
0.2
471
Tumor
0.2
716
Normal
0.2
968
Normal
0.2
362
Normal
0.2
722
Normal
0.2
816
Normal
0.2
777
Tumor
0.2
743
Tumor
0.2
713
Tumor
0.2
911
Tumor
0.2
187
Tumor
0.2
1022
Normal
0.2
728
Normal
0.2
494
Normal
0.2
884
Normal
0.2
483
Tumor
0.2
914
Normal
0.2
925
Tumor
0.2
488
Normal
0.2
528
Normal
0.2
785
Tumor
0.2
715
Tumor
0.2
214
Normal
0.2
518
Normal
0.2
355
Tumor
0.2
352
Normal
0.2
956
Normal
0.2
527
Tumor
0.2
924
Normal
0.2
416
Normal
0.2
666
Normal
0.2
515
Tumor
0.2
396
Normal
0.2
628
Normal
0.2
913
Tumor
0.2
1027
Tumor
0.2
131
Tumor
0.2
331
Tumor
0.2
874
Normal
0.2
468
Normal
0.1
642
Normal
0.1
573
Tumor
0.1
698
Normal
0.1
366
Normal
0.1
878
Normal
0.1
921
Tumor
0.1
446
Normal
0.1
965
Tumor
0.1
258
Normal
0.1
392
Normal
0.1
918
Normal
0.1
271
Tumor
0.1
815
Tumor
0.1
627
Tumor
0.1
283
Tumor
0.1
395
Tumor
0.1
161
Tumor
0.1
868
Normal
0.1
464
Normal
0.1
375
Tumor
0.1
138
Normal
0.1
433
Tumor
0.1
142
Normal
0.1
938
Normal
0.1
351
Tumor
0.1
664
Normal
0.1
1046
Normal
0.1
696
Normal
0.1
912
Normal
0.1
191
Tumor
0.1
744
Normal
0.1
818
Normal
0.1
391
Tumor
0.1
636
Normal
0.1
1014
Normal
0.1
923
Tumor
0.1
448
Normal
0.1
432
Normal
0.1
1032
Normal
0.1
272
Normal
0.1
851
Tumor
0.1
474
Normal
0.1
332
Normal
0.1
354
Normal
0.1
1021
Tumor
0.1
472
Normal
0.1
394
Normal
0.1
574
Normal
0.1
981
Tumor
0.0
714
Normal
0.0
922
Normal
0.0
1016
Normal
0.0
361
Tumor
0.0
926
Normal
0.0
451
Tumor
0.0
484
Normal
0.0
738
Normal
0.0
723
Tumor
0.0
858
Normal
0.0
964
Normal
0.0
1041
Tumor
0.0
953
Tumor
0.0
1043
Tumor
0.0
412
Normal
0.0
882
Normal
0.0
944
Normal
0.0
223
Tumor
0.0
141
Tumor
0.0
534
Normal
0.0
388
Normal
0.0
955
Tumor
0.0
861
Tumor
0.0
756
Normal
0.0
227
Tumor
0.0
298
Normal
0.0
196
Normal
0.0
387
Tumor
0.0
746
Normal
0.0
136
Normal
0.0
145
Tumor
0.0
328
Normal
0.0
278
Normal
0.0
1026
Normal
0.0
222
Normal
0.0
443
Tumor
0.0
824
Normal
0.0
422
Normal
0.0
982
Normal
0.0
727
Tumor
0.0
546
Normal
0.0
1025
Tumor
0.0
424
Normal
0.0
376
Normal
-0.1
113
Tumor
-0.1
114
Normal
-0.1
616
Normal
-0.1
648
Normal
-0.1
473
Tumor
-0.1
452
Normal
-0.1
428
Normal
-0.1
286
Normal
-0.1
665
Tumor
-0.1
228
Normal
-0.1
232
Normal
-0.1
466
Normal
-0.1
864
Normal
-0.1
111
Normal
-0.1
261
Tumor
-0.1
221
Tumor
-0.1
342
Normal
-0.1
572
Normal
-0.1
873
Tumor
-0.1
135
Tumor
-0.1
423
Tumor
-0.1
414
Normal
-0.1
977
Tumor
-0.1
742
Normal
-0.1
463
Tumor
-0.1
567
Tumor
-0.1
358
Normal
-0.1
426
Normal
-0.1
983
Tumor
-0.1
462
Normal
-0.2
557
Tumor
-0.2
148
Normal
-0.2
356
Normal
-0.2
172
Normal
-0.2
482
Normal
-0.2
685
Tumor
-0.2
357
Tumor
-0.2
862
Normal
-0.2
564
Normal
-0.2
127
Tumor
-0.2
537
Tumor
-0.2
162
Normal
-0.2
866
Normal
-0.2
937
Tumor
-0.2
618
Normal
-0.2
568
Normal
-0.2
445
Tumor
-0.2
436
Normal
-0.2
125
Tumor
-0.2
647
Tumor
-0.2
517
Tumor
-0.2
393
Tumor
-0.2
353
Tumor
-0.2
635
Tumor
-0.2
314
Normal
-0.3
112
Tumor
-0.3
285
Tumor
-0.3
327
Tumor
-0.3
128
Normal
-0.3
477
Tumor
-0.3
257
Tumor
-0.3
277
Tumor
-0.3
915
Tumor
-0.3
745
Tumor
-0.3
137
Tumor
-0.3
435
Tumor
-0.3
411
Tumor
-0.3
663
Tumor
-0.4
425
Tumor
-0.4
481
Tumor
-0.4
186
Normal
-0.4
132
Normal
-0.4
695
Tumor
-0.4
737
Tumor
-0.4
615
Tumor
-0.4
267
Tumor
-0.4
497
Tumor
-0.5
431
Tumor
-0.5
313
Tumor
-0.5
863
Tumor
-0.5
465
Tumor
-0.5
741
Tumor
-0.5
755
Tumor
-0.5
123
Tumor
-0.6
171
Tumor
-0.7
147
Tumor
-0.7
865
Tumor
-0.8
487
Tumor
-0.8
523
Tumor
-0.8
1013
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
