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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KAT2A is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KAT2A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.1
Number of samples
231
Samples
Sample
Description
TPM
DO23533
0 years, male, NA, stage:2, alive, 900 days
199.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
194.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
171.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
140.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
133.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
131.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
126.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
124.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
112.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
108.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
105.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
101.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
98.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
97.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
97.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
92.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
88.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
88.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
87.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
87.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
86.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
84.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
82.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
81.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
80.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
79.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
78.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
78.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
77.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
76.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
76.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
75.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
75.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
74.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
74.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
73.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
73.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
73.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
72.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
72.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
70.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
68.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
67.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
64.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
64.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
63.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
62.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
62.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
61.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
61.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
61.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
60.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
59.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
59.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
59.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
58.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
57.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
55.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
54.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
54.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
54.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
53.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
53.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
52.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
52.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
51.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
51.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
51.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
51.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
51.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
51.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
50.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
49.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
49.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
47.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
47.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
46.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
46.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
45.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
45.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
45.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
45.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
45.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
45.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
45.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
44.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
44.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
44.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
43.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
43.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
43.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
42.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
42.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
42.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
42.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
42.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
42.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
41.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
41.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
41.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
41.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
41.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
40.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
40.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
39.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
39.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
39.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
38.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
38.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
38.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
38.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
37.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
37.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
37.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
37.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
37.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
36.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
36.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
36.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
36.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
36.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
36.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
36.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
36.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
36.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
36.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
35.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
35.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
34.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
34.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
33.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
33.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
33.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
33.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
32.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
32.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
32.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
32.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
31.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
31.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
31.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
31.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
31.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
31.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
30.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
29.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
29.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
29.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
28.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
28.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
27.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
27.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
26.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
26.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
25.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
24.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
517
Tumor
2.1
967
Tumor
1.3
965
Tumor
1.3
951
Tumor
1.3
367
Tumor
1.2
413
Tumor
1.1
877
Tumor
1.1
943
Tumor
1.0
351
Tumor
1.0
463
Tumor
0.9
427
Tumor
0.9
112
Tumor
0.8
813
Tumor
0.7
385
Tumor
0.7
785
Tumor
0.7
467
Tumor
0.7
452
Normal
0.7
375
Tumor
0.7
497
Tumor
0.6
343
Tumor
0.6
661
Tumor
0.6
231
Tumor
0.6
455
Tumor
0.6
814
Normal
0.6
564
Normal
0.6
468
Normal
0.6
975
Tumor
0.6
411
Tumor
0.6
671
Tumor
0.6
391
Tumor
0.6
572
Normal
0.5
331
Tumor
0.5
123
Tumor
0.5
568
Normal
0.5
957
Tumor
0.5
221
Tumor
0.5
297
Tumor
0.5
456
Normal
0.5
953
Tumor
0.5
537
Tumor
0.5
357
Tumor
0.5
464
Normal
0.5
217
Tumor
0.4
388
Normal
0.4
127
Tumor
0.4
1031
Tumor
0.4
743
Tumor
0.4
124
Normal
0.4
114
Normal
0.4
545
Tumor
0.4
563
Tumor
0.4
393
Tumor
0.4
487
Tumor
0.4
125
Tumor
0.4
358
Normal
0.4
285
Tumor
0.4
222
Normal
0.4
1021
Tumor
0.4
111
Normal
0.4
126
Normal
0.4
574
Normal
0.4
128
Normal
0.4
283
Tumor
0.4
396
Normal
0.4
443
Tumor
0.3
514
Normal
0.3
383
Tumor
0.3
354
Normal
0.3
353
Tumor
0.3
1042
Normal
0.3
328
Normal
0.3
341
Tumor
0.3
132
Normal
0.3
431
Tumor
0.3
211
Tumor
0.3
423
Tumor
0.3
271
Tumor
0.3
213
Tumor
0.3
425
Tumor
0.3
386
Normal
0.3
267
Tumor
0.3
558
Normal
0.3
355
Tumor
0.2
648
Normal
0.2
881
Tumor
0.2
192
Normal
0.2
567
Tumor
0.2
666
Normal
0.2
963
Tumor
0.2
434
Normal
0.2
867
Tumor
0.2
311
Tumor
0.2
218
Normal
0.2
332
Normal
0.2
146
Normal
0.2
526
Normal
0.2
883
Tumor
0.2
498
Normal
0.2
662
Normal
0.2
313
Tumor
0.2
445
Tumor
0.2
433
Tumor
0.2
258
Normal
0.2
314
Normal
0.2
196
Normal
0.2
137
Tumor
0.2
466
Normal
0.2
436
Normal
0.2
257
Tumor
0.2
715
Tumor
0.2
142
Normal
0.2
435
Tumor
0.2
493
Tumor
0.2
665
Tumor
0.2
352
Normal
0.2
344
Normal
0.1
392
Normal
0.1
533
Tumor
0.1
573
Tumor
0.1
647
Tumor
0.1
138
Normal
0.1
664
Normal
0.1
663
Tumor
0.1
191
Tumor
0.1
136
Normal
0.1
224
Normal
0.1
195
Tumor
0.1
394
Normal
0.1
553
Tumor
0.1
672
Normal
0.1
786
Normal
0.1
277
Tumor
0.1
428
Normal
0.1
227
Tumor
0.1
864
Normal
0.1
312
Normal
0.1
214
Normal
0.1
278
Normal
0.1
863
Tumor
0.1
937
Tumor
0.0
424
Normal
0.0
744
Normal
0.0
571
Tumor
0.0
465
Tumor
0.0
727
Tumor
0.0
865
Tumor
0.0
913
Tumor
0.0
113
Tumor
0.0
491
Tumor
0.0
778
Normal
0.0
268
Normal
0.0
1032
Normal
0.0
395
Tumor
0.0
298
Normal
0.0
473
Tumor
0.0
534
Normal
0.0
451
Tumor
0.0
421
Tumor
0.0
685
Tumor
0.0
722
Normal
0.0
261
Tumor
0.0
742
Normal
0.0
365
Tumor
0.0
232
Normal
0.0
422
Normal
0.0
446
Normal
0.0
481
Tumor
0.0
432
Normal
0.0
1022
Normal
0.0
492
Normal
0.0
141
Tumor
0.0
868
Normal
-0.1
145
Tumor
-0.1
756
Normal
-0.1
866
Normal
-0.1
474
Normal
-0.1
518
Normal
-0.1
873
Tumor
-0.1
426
Normal
-0.1
415
Tumor
-0.1
777
Tumor
-0.1
483
Tumor
-0.1
384
Normal
-0.1
363
Tumor
-0.1
527
Tumor
-0.1
738
Normal
-0.1
262
Normal
-0.1
538
Normal
-0.1
917
Tumor
-0.1
462
Normal
-0.1
286
Normal
-0.1
414
Normal
-0.1
516
Normal
-0.1
228
Normal
-0.1
728
Normal
-0.1
327
Tumor
-0.1
364
Normal
-0.1
342
Normal
-0.1
361
Tumor
-0.1
488
Normal
-0.1
528
Normal
-0.1
212
Normal
-0.1
724
Normal
-0.2
862
Normal
-0.2
723
Tumor
-0.2
272
Normal
-0.2
861
Tumor
-0.2
557
Tumor
-0.2
884
Normal
-0.2
223
Tumor
-0.2
1041
Tumor
-0.2
874
Normal
-0.2
914
Normal
-0.2
695
Tumor
-0.2
714
Normal
-0.2
921
Tumor
-0.2
523
Tumor
-0.2
746
Normal
-0.2
362
Normal
-0.2
546
Normal
-0.2
755
Tumor
-0.2
284
Normal
-0.2
416
Normal
-0.2
923
Tumor
-0.2
716
Normal
-0.2
686
Normal
-0.3
368
Normal
-0.3
554
Normal
-0.3
956
Normal
-0.3
1025
Tumor
-0.3
1026
Normal
-0.3
912
Normal
-0.3
387
Tumor
-0.3
366
Normal
-0.3
737
Tumor
-0.3
444
Normal
-0.3
472
Normal
-0.3
925
Tumor
-0.3
954
Normal
-0.3
721
Tumor
-0.3
376
Normal
-0.3
513
Tumor
-0.3
1028
Normal
-0.3
131
Tumor
-0.3
482
Normal
-0.4
494
Normal
-0.4
356
Normal
-0.4
696
Normal
-0.4
911
Tumor
-0.4
713
Tumor
-0.4
955
Tumor
-0.4
745
Tumor
-0.4
484
Normal
-0.4
882
Normal
-0.4
524
Normal
-0.4
878
Normal
-0.5
952
Normal
-0.5
1027
Tumor
-0.5
741
Tumor
-0.5
976
Normal
-0.5
135
Tumor
-0.5
478
Normal
-0.5
964
Normal
-0.5
938
Normal
-0.5
958
Normal
-0.6
944
Normal
-0.6
477
Tumor
-0.6
915
Tumor
-0.7
471
Tumor
-0.7
461
Tumor
-0.7
412
Normal
-0.7
968
Normal
-0.7
916
Normal
-0.9
926
Normal
-1.0
924
Normal
-1.0
922
Normal
-1.0
918
Normal
-1.1
525
Tumor
-1.1
515
Tumor
-1.2
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
966
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
858
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
