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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMD11 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
100.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
86.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
80.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
69.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
66.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
65.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
64.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
58.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
56.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
56.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
55.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
55.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
54.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
53.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
53.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
52.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
50.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
49.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
49.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
47.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
46.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
46.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
45.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
45.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
45.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
45.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
45.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
45.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
45.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
44.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
44.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
44.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
43.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
43.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
43.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
42.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
42.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
42.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
41.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
41.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
41.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
41.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
41.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
41.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
41.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
41.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
41.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
40.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
40.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
40.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
39.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
39.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
39.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
38.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
38.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
38.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
37.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
37.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
36.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
35.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
35.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
35.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
35.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
35.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
35.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
34.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
34.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
34.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
34.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
34.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
34.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
34.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
34.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
34.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
34.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
33.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
33.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
33.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
33.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
33.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
32.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
32.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
32.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
32.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
32.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
32.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
31.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
31.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
30.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
30.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
30.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
29.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
29.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
29.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
29.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
29.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
29.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
28.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
28.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
27.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
27.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
27.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
27.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
26.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
26.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
24.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
24.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
23.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMD11 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.7
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
101.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
82.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
75.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
74.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
72.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
72.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
70.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
69.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
69.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
65.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
62.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
62.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
62.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
60.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
60.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
60.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
59.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
58.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
57.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
57.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
57.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
53.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
53.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
52.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
51.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
51.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
48.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
48.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
48.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
48.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
48.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
48.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
47.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
46.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
46.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
46.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
46.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
46.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
46.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
45.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
45.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
45.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
45.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
44.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
44.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
44.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
44.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
44.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
44.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
44.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
44.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
43.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
42.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
42.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
40.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
40.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
40.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
40.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
40.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
40.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
40.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
39.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
39.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
39.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
39.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
39.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
38.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
38.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
37.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
37.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
37.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
37.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
37.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
36.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
36.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
36.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
36.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
36.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
35.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
35.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
35.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
35.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
35.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
35.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
35.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
34.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
34.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
34.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
34.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
34.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
34.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
34.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
34.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
34.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
34.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
33.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
33.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
33.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
33.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
33.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
32.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
32.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
31.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
31.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
31.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
31.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
31.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
31.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
31.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
30.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
30.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
30.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
30.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
29.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
29.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
29.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
27.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
27.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
27.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
27.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
26.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
26.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
26.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
23.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
777
Tumor
0.6
513
Tumor
0.5
533
Tumor
0.5
724
Normal
0.5
755
Tumor
0.4
955
Tumor
0.4
741
Tumor
0.4
1027
Tumor
0.4
957
Tumor
0.4
327
Tumor
0.4
953
Tumor
0.4
713
Tumor
0.4
925
Tumor
0.4
981
Tumor
0.3
723
Tumor
0.3
1021
Tumor
0.3
743
Tumor
0.3
147
Tumor
0.3
1022
Normal
0.3
257
Tumor
0.3
1026
Normal
0.3
714
Normal
0.3
525
Tumor
0.3
746
Normal
0.3
353
Tumor
0.3
1015
Tumor
0.3
616
Normal
0.3
313
Tumor
0.3
951
Tumor
0.3
924
Normal
0.3
514
Normal
0.3
756
Normal
0.3
738
Normal
0.2
537
Tumor
0.2
944
Normal
0.2
558
Normal
0.2
745
Tumor
0.2
697
Tumor
0.2
983
Tumor
0.2
952
Normal
0.2
728
Normal
0.2
1032
Normal
0.2
727
Tumor
0.2
861
Tumor
0.2
617
Tumor
0.2
567
Tumor
0.2
448
Normal
0.2
923
Tumor
0.2
328
Normal
0.2
527
Tumor
0.2
123
Tumor
0.2
227
Tumor
0.2
938
Normal
0.2
351
Tumor
0.2
473
Tumor
0.2
966
Normal
0.2
515
Tumor
0.2
937
Tumor
0.2
1043
Tumor
0.2
912
Normal
0.2
742
Normal
0.2
978
Normal
0.2
696
Normal
0.2
1028
Normal
0.2
862
Normal
0.2
356
Normal
0.2
958
Normal
0.2
416
Normal
0.2
786
Normal
0.2
411
Tumor
0.2
965
Tumor
0.2
518
Normal
0.2
113
Tumor
0.2
926
Normal
0.2
685
Tumor
0.2
482
Normal
0.2
647
Tumor
0.2
722
Normal
0.2
472
Normal
0.2
865
Tumor
0.2
967
Tumor
0.2
412
Normal
0.2
648
Normal
0.1
922
Normal
0.1
964
Normal
0.1
494
Normal
0.1
477
Tumor
0.1
868
Normal
0.1
815
Tumor
0.1
716
Normal
0.1
918
Normal
0.1
435
Tumor
0.1
484
Normal
0.1
1031
Tumor
0.1
956
Normal
0.1
1013
Tumor
0.1
911
Tumor
0.1
436
Normal
0.1
462
Normal
0.1
125
Tumor
0.1
864
Normal
0.1
212
Normal
0.1
1042
Normal
0.1
571
Tumor
0.1
851
Tumor
0.1
1046
Normal
0.1
857
Tumor
0.1
663
Tumor
0.1
128
Normal
0.1
1044
Normal
0.1
884
Normal
0.1
573
Tumor
0.1
466
Normal
0.1
491
Tumor
0.1
391
Tumor
0.1
968
Normal
0.1
686
Normal
0.1
415
Tumor
0.1
546
Normal
0.1
528
Normal
0.1
721
Tumor
0.1
778
Normal
0.1
487
Tumor
0.1
474
Normal
0.1
432
Normal
0.1
564
Normal
0.1
913
Tumor
0.1
698
Normal
0.1
572
Normal
0.1
221
Tumor
0.1
534
Normal
0.1
915
Tumor
0.1
824
Normal
0.1
517
Tumor
0.1
451
Tumor
0.1
916
Normal
0.1
873
Tumor
0.1
866
Normal
0.1
557
Tumor
0.1
278
Normal
0.1
1025
Tumor
0.1
516
Normal
0.1
141
Tumor
0.1
977
Tumor
0.1
568
Normal
0.1
312
Normal
0.1
262
Normal
0.1
628
Normal
0.1
314
Normal
0.1
471
Tumor
0.1
523
Tumor
0.1
1014
Normal
0.1
858
Normal
0.1
1041
Tumor
0.1
481
Tumor
0.1
665
Tumor
0.1
456
Normal
0.0
261
Tumor
0.0
358
Normal
0.0
488
Normal
0.0
228
Normal
0.0
867
Tumor
0.0
852
Normal
0.0
661
Tumor
0.0
222
Normal
0.0
526
Normal
0.0
943
Tumor
0.0
284
Normal
0.0
286
Normal
0.0
423
Tumor
0.0
364
Normal
0.0
627
Tumor
0.0
785
Tumor
0.0
426
Normal
0.0
357
Tumor
0.0
132
Normal
0.0
214
Normal
0.0
817
Tumor
0.0
136
Normal
0.0
376
Normal
0.0
368
Normal
0.0
455
Tumor
0.0
1045
Tumor
0.0
127
Tumor
0.0
111
Normal
0.0
137
Tumor
0.0
414
Normal
0.0
818
Normal
0.0
618
Normal
0.0
341
Tumor
0.0
554
Normal
0.0
171
Tumor
0.0
982
Normal
0.0
272
Normal
0.0
882
Normal
0.0
258
Normal
0.0
196
Normal
0.0
114
Normal
0.0
863
Tumor
0.0
362
Normal
0.0
443
Tumor
0.0
342
Normal
0.0
355
Tumor
0.0
664
Normal
0.0
361
Tumor
0.0
267
Tumor
0.0
131
Tumor
0.0
1016
Normal
0.0
563
Tumor
0.0
424
Normal
0.0
285
Tumor
0.0
112
Tumor
0.0
126
Normal
0.0
695
Tumor
0.0
478
Normal
0.0
483
Tumor
0.0
921
Tumor
0.0
363
Tumor
0.0
465
Tumor
0.0
232
Normal
0.0
452
Normal
0.0
311
Tumor
0.0
162
Normal
0.0
816
Normal
0.0
671
Tumor
0.0
283
Tumor
0.0
954
Normal
0.0
715
Tumor
0.0
218
Normal
0.0
366
Normal
0.0
446
Normal
0.0
976
Normal
0.0
963
Tumor
0.0
425
Tumor
0.0
422
Normal
0.0
666
Normal
0.0
615
Tumor
0.0
223
Tumor
0.0
468
Normal
0.0
883
Tumor
0.0
535
Tumor
0.0
464
Normal
0.0
148
Normal
0.0
662
Normal
0.0
421
Tumor
0.0
224
Normal
0.0
497
Tumor
0.0
536
Normal
0.0
186
Normal
0.0
367
Tumor
0.0
142
Normal
-0.1
635
Tumor
-0.1
813
Tumor
-0.1
387
Tumor
-0.1
185
Tumor
-0.1
365
Tumor
-0.1
445
Tumor
-0.1
461
Tumor
-0.1
877
Tumor
-0.1
187
Tumor
-0.1
217
Tumor
-0.1
386
Normal
-0.1
434
Normal
-0.1
431
Tumor
-0.1
874
Normal
-0.1
878
Normal
-0.1
145
Tumor
-0.1
553
Tumor
-0.1
188
Normal
-0.1
354
Normal
-0.1
914
Normal
-0.1
298
Normal
-0.1
394
Normal
-0.1
277
Tumor
-0.1
191
Tumor
-0.1
524
Normal
-0.1
172
Normal
-0.1
413
Tumor
-0.1
344
Normal
-0.1
984
Normal
-0.1
138
Normal
-0.1
392
Normal
-0.1
271
Tumor
-0.1
352
Normal
-0.1
213
Tumor
-0.1
395
Tumor
-0.1
427
Tumor
-0.1
428
Normal
-0.1
642
Normal
-0.1
492
Normal
-0.1
493
Tumor
-0.1
881
Tumor
-0.1
135
Tumor
-0.1
433
Tumor
-0.1
231
Tumor
-0.1
192
Normal
-0.1
975
Tumor
-0.1
343
Tumor
-0.1
917
Tumor
-0.1
636
Normal
-0.1
195
Tumor
-0.1
124
Normal
-0.1
393
Tumor
-0.1
545
Tumor
-0.2
332
Normal
-0.2
211
Tumor
-0.2
385
Tumor
-0.2
463
Tumor
-0.2
388
Normal
-0.2
384
Normal
-0.2
814
Normal
-0.2
538
Normal
-0.2
146
Normal
-0.2
641
Tumor
-0.2
447
Tumor
-0.2
574
Normal
-0.2
737
Tumor
-0.2
297
Tumor
-0.2
375
Tumor
-0.2
268
Normal
-0.2
498
Normal
-0.2
161
Tumor
-0.2
396
Normal
-0.2
331
Tumor
-0.2
383
Tumor
-0.2
444
Normal
-0.2
823
Tumor
-0.2
467
Tumor
-0.2
744
Normal
-0.3
672
Normal
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
