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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FTSJ3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
61.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
60.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
49.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
38.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
36.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
35.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
33.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
32.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
30.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
27.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
26.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
24.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
23.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
23.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
22.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
21.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
21.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
16.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FTSJ3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.2
Number of samples
231
Samples
Sample
Description
TPM
DO50791
0 years, female, NA, stage:1, dead, 480 days
78.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
75.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
58.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
52.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
44.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
42.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
37.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
37.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
35.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
35.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
33.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
32.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
30.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
28.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
26.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
22.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
22.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.5
685
Tumor
1.4
387
Tumor
1.4
331
Tumor
1.4
537
Tumor
1.2
967
Tumor
1.1
353
Tumor
1.1
473
Tumor
1.1
123
Tumor
1.0
351
Tumor
0.9
671
Tumor
0.9
367
Tumor
0.9
395
Tumor
0.9
567
Tumor
0.8
1041
Tumor
0.8
865
Tumor
0.8
743
Tumor
0.8
285
Tumor
0.8
187
Tumor
0.7
861
Tumor
0.7
433
Tumor
0.7
951
Tumor
0.7
957
Tumor
0.7
427
Tumor
0.7
557
Tumor
0.7
635
Tumor
0.7
571
Tumor
0.6
545
Tumor
0.6
447
Tumor
0.6
953
Tumor
0.6
227
Tumor
0.6
391
Tumor
0.6
355
Tumor
0.6
527
Tumor
0.6
483
Tumor
0.6
661
Tumor
0.6
113
Tumor
0.5
423
Tumor
0.5
517
Tumor
0.5
983
Tumor
0.5
267
Tumor
0.5
213
Tumor
0.5
665
Tumor
0.5
981
Tumor
0.5
375
Tumor
0.5
525
Tumor
0.5
1027
Tumor
0.5
467
Tumor
0.4
923
Tumor
0.4
435
Tumor
0.4
257
Tumor
0.4
477
Tumor
0.4
443
Tumor
0.4
513
Tumor
0.4
211
Tumor
0.4
413
Tumor
0.4
261
Tumor
0.3
867
Tumor
0.3
535
Tumor
0.3
223
Tumor
0.3
1021
Tumor
0.3
617
Tumor
0.3
727
Tumor
0.3
363
Tumor
0.3
195
Tumor
0.3
817
Tumor
0.3
497
Tumor
0.3
1025
Tumor
0.3
361
Tumor
0.3
741
Tumor
0.3
911
Tumor
0.3
737
Tumor
0.3
493
Tumor
0.3
533
Tumor
0.2
724
Normal
0.2
877
Tumor
0.2
913
Tumor
0.2
937
Tumor
0.2
1013
Tumor
0.2
221
Tumor
0.2
327
Tumor
0.2
1031
Tumor
0.2
191
Tumor
0.2
925
Tumor
0.2
873
Tumor
0.2
171
Tumor
0.2
385
Tumor
0.2
311
Tumor
0.1
131
Tumor
0.1
823
Tumor
0.1
697
Tumor
0.1
745
Tumor
0.1
313
Tumor
0.1
145
Tumor
0.1
341
Tumor
0.1
573
Tumor
0.1
112
Tumor
0.1
141
Tumor
0.1
491
Tumor
0.1
411
Tumor
0.1
137
Tumor
0.1
283
Tumor
0.0
393
Tumor
0.0
915
Tumor
0.0
755
Tumor
0.0
431
Tumor
0.0
383
Tumor
0.0
232
Normal
0.0
135
Tumor
0.0
1015
Tumor
0.0
641
Tumor
0.0
231
Tumor
0.0
815
Tumor
0.0
425
Tumor
0.0
297
Tumor
0.0
217
Tumor
0.0
977
Tumor
0.0
715
Tumor
0.0
415
Tumor
0.0
357
Tumor
0.0
161
Tumor
0.0
277
Tumor
0.0
785
Tumor
-0.1
572
Normal
-0.1
523
Tumor
-0.1
451
Tumor
-0.1
943
Tumor
-0.1
814
Normal
-0.1
851
Tumor
-0.1
695
Tumor
-0.1
465
Tumor
-0.1
471
Tumor
-0.1
271
Tumor
-0.1
881
Tumor
-0.1
563
Tumor
-0.1
445
Tumor
-0.1
515
Tumor
-0.1
484
Normal
-0.2
125
Tumor
-0.2
1045
Tumor
-0.2
534
Normal
-0.2
713
Tumor
-0.2
462
Normal
-0.2
328
Normal
-0.2
356
Normal
-0.2
924
Normal
-0.2
185
Tumor
-0.2
615
Tumor
-0.2
647
Tumor
-0.2
568
Normal
-0.2
127
Tumor
-0.2
813
Tumor
-0.2
944
Normal
-0.2
487
Tumor
-0.2
488
Normal
-0.2
1014
Normal
-0.2
492
Normal
-0.2
268
Normal
-0.2
142
Normal
-0.2
524
Normal
-0.2
392
Normal
-0.2
546
Normal
-0.2
553
Tumor
-0.2
975
Tumor
-0.2
663
Tumor
-0.2
396
Normal
-0.2
564
Normal
-0.2
636
Normal
-0.2
516
Normal
-0.2
132
Normal
-0.2
666
Normal
-0.3
696
Normal
-0.3
114
Normal
-0.3
386
Normal
-0.3
478
Normal
-0.3
518
Normal
-0.3
954
Normal
-0.3
968
Normal
-0.3
498
Normal
-0.3
664
Normal
-0.3
536
Normal
-0.3
883
Tumor
-0.3
648
Normal
-0.3
938
Normal
-0.3
262
Normal
-0.3
866
Normal
-0.3
984
Normal
-0.3
857
Tumor
-0.3
466
Normal
-0.3
955
Tumor
-0.3
482
Normal
-0.3
723
Tumor
-0.3
956
Normal
-0.3
916
Normal
-0.3
627
Tumor
-0.3
228
Normal
-0.3
738
Normal
-0.3
958
Normal
-0.3
982
Normal
-0.3
455
Tumor
-0.3
686
Normal
-0.3
394
Normal
-0.3
222
Normal
-0.3
468
Normal
-0.3
1044
Normal
-0.3
344
Normal
-0.3
128
Normal
-0.3
1028
Normal
-0.3
963
Tumor
-0.3
388
Normal
-0.3
481
Tumor
-0.3
448
Normal
-0.3
966
Normal
-0.3
554
Normal
-0.3
714
Normal
-0.3
964
Normal
-0.3
672
Normal
-0.3
416
Normal
-0.3
314
Normal
-0.3
526
Normal
-0.3
574
Normal
-0.3
474
Normal
-0.3
716
Normal
-0.4
258
Normal
-0.4
272
Normal
-0.4
538
Normal
-0.4
286
Normal
-0.4
224
Normal
-0.4
1032
Normal
-0.4
412
Normal
-0.4
384
Normal
-0.4
868
Normal
-0.4
862
Normal
-0.4
461
Tumor
-0.4
528
Normal
-0.4
494
Normal
-0.4
1046
Normal
-0.4
278
Normal
-0.4
616
Normal
-0.4
558
Normal
-0.4
978
Normal
-0.4
786
Normal
-0.4
111
Normal
-0.4
472
Normal
-0.4
926
Normal
-0.4
858
Normal
-0.4
698
Normal
-0.4
1042
Normal
-0.4
136
Normal
-0.4
147
Tumor
-0.4
917
Tumor
-0.4
952
Normal
-0.4
514
Normal
-0.4
1043
Tumor
-0.4
218
Normal
-0.4
212
Normal
-0.4
284
Normal
-0.4
421
Tumor
-0.4
196
Normal
-0.4
922
Normal
-0.4
918
Normal
-0.4
138
Normal
-0.4
434
Normal
-0.4
722
Normal
-0.4
124
Normal
-0.4
662
Normal
-0.4
742
Normal
-0.4
912
Normal
-0.4
444
Normal
-0.4
452
Normal
-0.4
352
Normal
-0.4
628
Normal
-0.4
376
Normal
-0.4
777
Tumor
-0.4
364
Normal
-0.4
778
Normal
-0.4
343
Tumor
-0.4
721
Tumor
-0.4
162
Normal
-0.4
148
Normal
-0.4
864
Normal
-0.4
436
Normal
-0.4
146
Normal
-0.4
464
Normal
-0.4
728
Normal
-0.5
618
Normal
-0.5
214
Normal
-0.5
342
Normal
-0.5
446
Normal
-0.5
422
Normal
-0.5
424
Normal
-0.5
744
Normal
-0.5
414
Normal
-0.5
874
Normal
-0.5
824
Normal
-0.5
426
Normal
-0.5
298
Normal
-0.5
126
Normal
-0.5
756
Normal
-0.5
852
Normal
-0.5
863
Tumor
-0.5
354
Normal
-0.5
332
Normal
-0.5
882
Normal
-0.5
463
Tumor
-0.5
432
Normal
-0.5
368
Normal
-0.5
1016
Normal
-0.5
456
Normal
-0.5
1026
Normal
-0.5
192
Normal
-0.5
818
Normal
-0.5
172
Normal
-0.5
878
Normal
-0.5
976
Normal
-0.6
362
Normal
-0.6
746
Normal
-0.6
642
Normal
-0.6
188
Normal
-0.6
914
Normal
-0.6
1022
Normal
-0.6
816
Normal
-0.6
884
Normal
-0.6
312
Normal
-0.6
428
Normal
-0.6
358
Normal
-0.7
365
Tumor
-0.7
366
Normal
-0.7
186
Normal
-0.8
921
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
