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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDK5RAP3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
48.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
244.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
161.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
146.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
140.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
110.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
109.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
109.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
103.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
98.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
95.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
94.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
93.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
88.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
87.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
85.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
85.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
84.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
84.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
83.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
83.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
81.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
80.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
79.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
79.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
78.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
78.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
77.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
77.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
77.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
74.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
73.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
73.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
73.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
72.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
72.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
72.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
70.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
70.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
70.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
70.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
70.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
68.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
67.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
66.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
66.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
66.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
66.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
65.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
65.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
65.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
65.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
65.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
65.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
65.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
65.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
64.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
64.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
64.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
64.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
64.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
63.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
63.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
63.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
62.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
62.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
61.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
61.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
61.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
60.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
60.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
60.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
59.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
59.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
59.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
59.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
59.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
59.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
59.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
59.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
58.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
58.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
58.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
58.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
58.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
58.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
58.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
58.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
58.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
58.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
58.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
58.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
58.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
57.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
57.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
57.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
57.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
56.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
56.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
56.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
56.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
56.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
55.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
55.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
55.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
55.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
55.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
55.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
55.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
55.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
54.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
54.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
54.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
54.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
54.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
54.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
54.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
53.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
53.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
53.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
53.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
53.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
53.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
53.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
53.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
52.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
52.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
52.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
52.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
52.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
52.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
51.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
51.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
51.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
51.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
51.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
50.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
50.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
50.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
50.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
50.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
50.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
50.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
50.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
50.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
50.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
50.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
50.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
50.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
50.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
49.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
49.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
49.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
49.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
49.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
49.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
48.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
48.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
48.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
48.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
48.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
48.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
48.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
47.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
47.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
47.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
47.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
47.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
47.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
47.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
47.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
47.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
46.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
46.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
46.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
46.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
46.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
45.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
45.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
45.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
45.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
45.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
45.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
45.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
45.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
45.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
44.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
44.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
44.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
44.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
44.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
43.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
43.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
43.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
43.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
43.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
42.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
42.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
42.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
42.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
42.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
42.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
42.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
41.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
41.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
41.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
41.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
41.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
41.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
41.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
41.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
41.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
40.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
40.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
40.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
40.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
40.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
40.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
39.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
39.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
39.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
39.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
39.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
39.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
39.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
38.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
38.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
38.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
38.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
38.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
38.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
38.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
38.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
38.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
38.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
38.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
38.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
37.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
37.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
37.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
37.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
37.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
37.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
37.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
36.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
36.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
36.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
36.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
36.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
36.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
36.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
36.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
36.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
36.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
36.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
36.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
36.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
36.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
35.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
35.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
35.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
35.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
35.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
35.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
35.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
35.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
34.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
34.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
34.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
34.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
33.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
33.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
33.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
33.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
32.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
32.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
32.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
32.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
31.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
31.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
31.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
31.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
30.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
30.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
30.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
30.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
30.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
30.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
29.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
29.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
29.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
29.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
28.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
28.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
28.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
27.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
27.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
27.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
26.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
26.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
25.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
24.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
24.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
20.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDK5RAP3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
117.1
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
458.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
435.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
405.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
398.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
335.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
322.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
319.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
314.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
301.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
290.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
287.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
280.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
272.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
253.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
252.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
250.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
246.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
219.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
210.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
202.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
202.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
201.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
199.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
198.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
196.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
195.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
189.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
188.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
183.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
182.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
178.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
177.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
176.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
175.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
171.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
171.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
169.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
169.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
169.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
168.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
167.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
165.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
164.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
163.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
163.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
158.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
157.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
155.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
153.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
152.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
149.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
148.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
147.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
147.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
147.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
146.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
145.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
145.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
145.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
144.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
142.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
139.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
136.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
136.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
135.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
134.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
133.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
133.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
131.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
128.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
127.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
126.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
125.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
124.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
122.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
122.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
121.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
120.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
120.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
119.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
118.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
116.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
115.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
115.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
115.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
114.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
112.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
112.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
112.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
111.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
111.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
109.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
109.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
107.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
107.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
107.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
106.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
105.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
105.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
105.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
104.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
104.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
103.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
100.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
100.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
98.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
97.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
97.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
97.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
97.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
97.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
96.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
95.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
95.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
95.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
95.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
94.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
94.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
93.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
93.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
93.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
92.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
91.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
91.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
90.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
90.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
89.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
88.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
88.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
88.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
87.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
87.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
87.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
87.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
87.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
87.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
86.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
85.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
85.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
84.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
84.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
84.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
83.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
83.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
82.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
82.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
82.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
80.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
80.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
79.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
79.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
78.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
78.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
78.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
78.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
77.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
77.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
77.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
76.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
76.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
76.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
76.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
75.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
75.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
74.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
73.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
73.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
72.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
72.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
71.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
70.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
70.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
69.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
69.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
68.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
68.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
67.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
67.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
67.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
66.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
66.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
65.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
64.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
64.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
64.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
64.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
64.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
63.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
63.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
62.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
62.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
60.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
60.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
59.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
59.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
59.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
59.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
59.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
58.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
58.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
58.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
58.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
57.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
57.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
56.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
55.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
55.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
55.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
55.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
54.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
54.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
53.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
51.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
50.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
50.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
49.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
47.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
46.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
46.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
46.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
45.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
44.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
44.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
42.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
39.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
36.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
36.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
33.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
0.6
815
Tumor
0.6
527
Tumor
0.6
353
Tumor
0.5
431
Tumor
0.5
741
Tumor
0.5
113
Tumor
0.5
695
Tumor
0.5
443
Tumor
0.4
981
Tumor
0.4
937
Tumor
0.4
112
Tumor
0.4
445
Tumor
0.4
1015
Tumor
0.4
617
Tumor
0.4
878
Normal
0.3
487
Tumor
0.3
232
Normal
0.3
137
Tumor
0.3
128
Normal
0.3
867
Tumor
0.3
387
Tumor
0.3
915
Tumor
0.3
744
Normal
0.3
124
Normal
0.3
451
Tumor
0.3
861
Tumor
0.3
1021
Tumor
0.3
1026
Normal
0.3
724
Normal
0.3
356
Normal
0.3
114
Normal
0.3
911
Tumor
0.3
636
Normal
0.3
955
Tumor
0.3
271
Tumor
0.3
127
Tumor
0.3
777
Tumor
0.3
571
Tumor
0.3
1028
Normal
0.3
728
Normal
0.3
132
Normal
0.2
663
Tumor
0.2
111
Normal
0.2
648
Normal
0.2
572
Normal
0.2
342
Normal
0.2
466
Normal
0.2
778
Normal
0.2
686
Normal
0.2
367
Tumor
0.2
136
Normal
0.2
468
Normal
0.2
148
Normal
0.2
738
Normal
0.2
672
Normal
0.2
186
Normal
0.2
376
Normal
0.2
618
Normal
0.2
138
Normal
0.2
448
Normal
0.2
568
Normal
0.2
666
Normal
0.2
142
Normal
0.2
214
Normal
0.2
332
Normal
0.2
196
Normal
0.2
358
Normal
0.2
984
Normal
0.2
863
Tumor
0.2
392
Normal
0.2
641
Tumor
0.2
713
Tumor
0.2
647
Tumor
0.2
422
Normal
0.2
696
Normal
0.2
727
Tumor
0.2
862
Normal
0.2
354
Normal
0.2
873
Tumor
0.2
465
Tumor
0.2
352
Normal
0.2
452
Normal
0.2
298
Normal
0.2
662
Normal
0.2
564
Normal
0.2
162
Normal
0.2
341
Tumor
0.2
1044
Normal
0.2
1032
Normal
0.2
488
Normal
0.2
262
Normal
0.1
426
Normal
0.1
528
Normal
0.1
714
Normal
0.1
746
Normal
0.1
554
Normal
0.1
944
Normal
0.1
135
Tumor
0.1
414
Normal
0.1
278
Normal
0.1
755
Tumor
0.1
436
Normal
0.1
412
Normal
0.1
868
Normal
0.1
314
Normal
0.1
742
Normal
0.1
824
Normal
0.1
968
Normal
0.1
1022
Normal
0.1
383
Tumor
0.1
171
Tumor
0.1
126
Normal
0.1
286
Normal
0.1
642
Normal
0.1
172
Normal
0.1
396
Normal
0.1
227
Tumor
0.1
221
Tumor
0.1
456
Normal
0.1
912
Normal
0.1
664
Normal
0.1
698
Normal
0.1
344
Normal
0.1
218
Normal
0.1
462
Normal
0.1
615
Tumor
0.1
146
Normal
0.1
477
Tumor
0.1
284
Normal
0.1
952
Normal
0.1
628
Normal
0.1
616
Normal
0.1
756
Normal
0.1
258
Normal
0.1
786
Normal
0.1
484
Normal
0.1
384
Normal
0.1
526
Normal
0.1
977
Tumor
0.1
864
Normal
0.1
921
Tumor
0.1
464
Normal
0.1
327
Tumor
0.1
723
Tumor
0.1
388
Normal
0.1
455
Tumor
0.1
866
Normal
0.1
882
Normal
0.1
966
Normal
0.1
411
Tumor
0.1
391
Tumor
0.1
818
Normal
0.1
222
Normal
0.1
914
Normal
0.1
413
Tumor
0.1
261
Tumor
0.1
534
Normal
0.1
665
Tumor
0.1
661
Tumor
0.1
518
Normal
0.1
357
Tumor
0.1
482
Normal
0.1
816
Normal
0.1
1016
Normal
0.1
1014
Normal
0.1
268
Normal
0.1
563
Tumor
0.1
228
Normal
0.1
494
Normal
0.1
435
Tumor
0.1
923
Tumor
0.0
188
Normal
0.0
722
Normal
0.0
474
Normal
0.0
185
Tumor
0.0
394
Normal
0.0
386
Normal
0.0
938
Normal
0.0
982
Normal
0.0
963
Tumor
0.0
858
Normal
0.0
1045
Tumor
0.0
272
Normal
0.0
187
Tumor
0.0
364
Normal
0.0
922
Normal
0.0
924
Normal
0.0
434
Normal
0.0
967
Tumor
0.0
312
Normal
0.0
951
Tumor
0.0
721
Tumor
0.0
191
Tumor
0.0
141
Tumor
0.0
145
Tumor
0.0
415
Tumor
0.0
497
Tumor
0.0
956
Normal
0.0
368
Normal
0.0
954
Normal
0.0
976
Normal
0.0
223
Tumor
0.0
574
Normal
0.0
472
Normal
0.0
743
Tumor
0.0
536
Normal
0.0
362
Normal
0.0
558
Normal
0.0
1046
Normal
0.0
546
Normal
0.0
432
Normal
0.0
874
Normal
0.0
1031
Tumor
0.0
716
Normal
0.0
884
Normal
0.0
351
Tumor
0.0
913
Tumor
0.0
983
Tumor
0.0
978
Normal
0.0
424
Normal
0.0
538
Normal
0.0
212
Normal
-0.1
428
Normal
-0.1
421
Tumor
-0.1
328
Normal
-0.1
515
Tumor
-0.1
446
Normal
-0.1
1013
Tumor
-0.1
852
Normal
-0.1
492
Normal
-0.1
355
Tumor
-0.1
433
Tumor
-0.1
918
Normal
-0.1
267
Tumor
-0.1
925
Tumor
-0.1
444
Normal
-0.1
553
Tumor
-0.1
395
Tumor
-0.1
926
Normal
-0.1
463
Tumor
-0.1
533
Tumor
-0.1
975
Tumor
-0.1
785
Tumor
-0.1
131
Tumor
-0.1
524
Normal
-0.1
916
Normal
-0.1
471
Tumor
-0.1
277
Tumor
-0.1
737
Tumor
-0.1
231
Tumor
-0.1
516
Normal
-0.1
416
Normal
-0.1
514
Normal
-0.1
211
Tumor
-0.1
881
Tumor
-0.1
285
Tumor
-0.1
483
Tumor
-0.1
1027
Tumor
-0.1
958
Normal
-0.1
697
Tumor
-0.1
217
Tumor
-0.1
627
Tumor
-0.1
965
Tumor
-0.1
1042
Normal
-0.1
423
Tumor
-0.1
478
Normal
-0.1
1043
Tumor
-0.1
366
Normal
-0.2
964
Normal
-0.2
361
Tumor
-0.2
224
Normal
-0.2
192
Normal
-0.2
573
Tumor
-0.2
363
Tumor
-0.2
427
Tumor
-0.2
297
Tumor
-0.2
523
Tumor
-0.2
473
Tumor
-0.2
883
Tumor
-0.2
331
Tumor
-0.2
817
Tumor
-0.2
535
Tumor
-0.2
814
Normal
-0.2
957
Tumor
-0.2
498
Normal
-0.2
857
Tumor
-0.2
813
Tumor
-0.2
447
Tumor
-0.2
365
Tumor
-0.3
125
Tumor
-0.3
685
Tumor
-0.3
461
Tumor
-0.3
851
Tumor
-0.3
635
Tumor
-0.3
385
Tumor
-0.3
481
Tumor
-0.3
491
Tumor
-0.3
537
Tumor
-0.3
943
Tumor
-0.3
953
Tumor
-0.3
311
Tumor
-0.4
467
Tumor
-0.4
525
Tumor
-0.4
917
Tumor
-0.4
161
Tumor
-0.4
823
Tumor
-0.4
195
Tumor
-0.4
343
Tumor
-0.4
257
Tumor
-0.4
283
Tumor
-0.4
147
Tumor
-0.4
567
Tumor
-0.4
715
Tumor
-0.5
865
Tumor
-0.5
213
Tumor
-0.5
877
Tumor
-0.5
745
Tumor
-0.5
517
Tumor
-0.5
513
Tumor
-0.6
425
Tumor
-0.6
493
Tumor
-0.6
1041
Tumor
-0.6
393
Tumor
-0.6
557
Tumor
-0.7
671
Tumor
-0.7
375
Tumor
-0.7
545
Tumor
-0.8
313
Tumor
-0.9
1025
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
