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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KPNB1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
115.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
103.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
97.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
91.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
74.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
71.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
64.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
60.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
58.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
56.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
54.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
53.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
53.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
52.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
51.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
51.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
50.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
49.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
49.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
46.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
44.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
43.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
43.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
42.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
41.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
39.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
38.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
38.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
38.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
37.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
36.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
36.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
36.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
35.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
35.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
33.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
32.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
32.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
31.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
31.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
30.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
29.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
29.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
28.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
27.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
27.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
27.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
25.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
24.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
22.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
20.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KPNB1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.7
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
114.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
96.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
94.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
93.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
86.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
84.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
82.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
81.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
79.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
79.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
78.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
76.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
75.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
74.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
74.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
74.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
73.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
71.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
71.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
69.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
67.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
67.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
65.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
65.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
64.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
62.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
62.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
61.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
61.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
61.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
60.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
59.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
58.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
58.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
57.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
57.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
56.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
56.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
55.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
54.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
54.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
53.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
52.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
52.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
51.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
51.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
50.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
50.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
50.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
50.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
49.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
49.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
49.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
48.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
48.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
48.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
47.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
47.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
46.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
46.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
45.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
45.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
45.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
45.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
45.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
45.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
44.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
44.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
44.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
44.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
43.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
43.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
43.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
43.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
42.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
42.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
41.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
41.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
40.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
40.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
40.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
40.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
39.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
39.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
39.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
39.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
39.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
38.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
38.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
38.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
38.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
38.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
37.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
37.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
37.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
37.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
37.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
37.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
37.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
37.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
36.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
36.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
36.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
36.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
35.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
35.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
35.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
34.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
34.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
34.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
34.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
34.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
33.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
33.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
33.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
33.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
32.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
32.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
32.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
32.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
31.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
31.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
31.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
31.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
31.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
31.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
31.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
31.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
31.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
30.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
30.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
30.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
30.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
29.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
29.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
29.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
29.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
29.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
28.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
28.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
28.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
28.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
27.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
27.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
26.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
26.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
26.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
26.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
26.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
25.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
25.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
23.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
0.7
533
Tumor
0.7
573
Tumor
0.6
375
Tumor
0.6
957
Tumor
0.5
1013
Tumor
0.5
953
Tumor
0.5
663
Tumor
0.5
661
Tumor
0.5
357
Tumor
0.5
257
Tumor
0.5
125
Tumor
0.4
313
Tumor
0.4
465
Tumor
0.4
343
Tumor
0.4
435
Tumor
0.3
385
Tumor
0.3
743
Tumor
0.3
147
Tumor
0.3
671
Tumor
0.3
411
Tumor
0.3
745
Tumor
0.3
741
Tumor
0.3
283
Tumor
0.3
213
Tumor
0.2
211
Tumor
0.2
277
Tumor
0.2
1027
Tumor
0.2
367
Tumor
0.2
131
Tumor
0.2
393
Tumor
0.2
127
Tumor
0.2
567
Tumor
0.2
391
Tumor
0.2
436
Normal
0.2
413
Tumor
0.2
665
Tumor
0.1
445
Tumor
0.1
128
Normal
0.1
355
Tumor
0.1
297
Tumor
0.1
815
Tumor
0.1
724
Normal
0.1
331
Tumor
0.1
427
Tumor
0.1
981
Tumor
0.1
813
Tumor
0.1
314
Normal
0.1
467
Tumor
0.1
463
Tumor
0.1
285
Tumor
0.1
865
Tumor
0.1
278
Normal
0.1
456
Normal
0.1
126
Normal
0.1
361
Tumor
0.1
452
Normal
0.1
272
Normal
0.1
914
Normal
0.1
298
Normal
0.1
192
Normal
0.1
432
Normal
0.1
527
Tumor
0.1
124
Normal
0.1
342
Normal
0.1
383
Tumor
0.1
983
Tumor
0.1
358
Normal
0.1
523
Tumor
0.1
434
Normal
0.1
311
Tumor
0.1
114
Normal
0.1
877
Tumor
0.1
685
Tumor
0.1
376
Normal
0.1
497
Tumor
0.0
262
Normal
0.0
387
Tumor
0.0
196
Normal
0.0
111
Normal
0.0
491
Tumor
0.0
362
Normal
0.0
421
Tumor
0.0
217
Tumor
0.0
647
Tumor
0.0
943
Tumor
0.0
861
Tumor
0.0
446
Normal
0.0
738
Normal
0.0
188
Normal
0.0
394
Normal
0.0
286
Normal
0.0
258
Normal
0.0
392
Normal
0.0
366
Normal
0.0
517
Tumor
0.0
146
Normal
0.0
162
Normal
0.0
824
Normal
0.0
161
Tumor
0.0
862
Normal
0.0
344
Normal
0.0
138
Normal
0.0
341
Tumor
0.0
468
Normal
0.0
635
Tumor
0.0
545
Tumor
0.0
187
Tumor
0.0
386
Normal
0.0
666
Normal
0.0
737
Tumor
0.0
395
Tumor
0.0
195
Tumor
0.0
746
Normal
0.0
332
Normal
0.0
422
Normal
0.0
132
Normal
0.0
814
Normal
0.0
977
Tumor
0.0
222
Normal
0.0
271
Tumor
0.0
858
Normal
0.0
123
Tumor
0.0
444
Normal
0.0
353
Tumor
0.0
867
Tumor
0.0
662
Normal
0.0
214
Normal
0.0
185
Tumor
0.0
141
Tumor
0.0
352
Normal
0.0
695
Tumor
0.0
231
Tumor
0.0
557
Tumor
0.0
113
Tumor
0.0
414
Normal
0.0
368
Normal
0.0
384
Normal
0.0
518
Normal
0.0
881
Tumor
0.0
191
Tumor
0.0
388
Normal
0.0
136
Normal
0.0
396
Normal
0.0
1021
Tumor
0.0
816
Normal
0.0
423
Tumor
0.0
148
Normal
0.0
447
Tumor
0.0
818
Normal
0.0
571
Tumor
0.0
466
Normal
0.0
864
Normal
0.0
218
Normal
-0.1
911
Tumor
-0.1
464
Normal
-0.1
778
Normal
-0.1
448
Normal
-0.1
224
Normal
-0.1
952
Normal
-0.1
232
Normal
-0.1
426
Normal
-0.1
186
Normal
-0.1
462
Normal
-0.1
742
Normal
-0.1
137
Tumor
-0.1
727
Tumor
-0.1
284
Normal
-0.1
428
Normal
-0.1
648
Normal
-0.1
443
Tumor
-0.1
312
Normal
-0.1
424
Normal
-0.1
431
Tumor
-0.1
525
Tumor
-0.1
172
Normal
-0.1
461
Tumor
-0.1
228
Normal
-0.1
777
Tumor
-0.1
227
Tumor
-0.1
171
Tumor
-0.1
664
Normal
-0.1
363
Tumor
-0.1
965
Tumor
-0.1
863
Tumor
-0.1
455
Tumor
-0.1
882
Normal
-0.1
873
Tumor
-0.1
966
Normal
-0.1
982
Normal
-0.1
482
Normal
-0.1
268
Normal
-0.1
574
Normal
-0.1
723
Tumor
-0.1
354
Normal
-0.1
642
Normal
-0.1
1043
Tumor
-0.1
923
Tumor
-0.1
1026
Normal
-0.1
1022
Normal
-0.1
866
Normal
-0.1
568
Normal
-0.1
713
Tumor
-0.1
628
Normal
-0.1
472
Normal
-0.1
874
Normal
-0.1
976
Normal
-0.1
515
Tumor
-0.1
722
Normal
-0.1
267
Tumor
-0.1
416
Normal
-0.1
917
Tumor
-0.1
364
Normal
-0.1
912
Normal
-0.1
488
Normal
-0.1
487
Tumor
-0.1
564
Normal
-0.1
956
Normal
-0.1
112
Tumor
-0.1
868
Normal
-0.1
686
Normal
-0.1
474
Normal
-0.1
1015
Tumor
-0.1
984
Normal
-0.1
964
Normal
-0.1
356
Normal
-0.1
698
Normal
-0.1
697
Tumor
-0.1
978
Normal
-0.1
1016
Normal
-0.1
451
Tumor
-0.1
878
Normal
-0.1
823
Tumor
-0.1
938
Normal
-0.1
672
Normal
-0.1
744
Normal
-0.1
636
Normal
-0.1
857
Tumor
-0.1
951
Tumor
-0.2
223
Tumor
-0.2
212
Normal
-0.2
883
Tumor
-0.2
925
Tumor
-0.2
537
Tumor
-0.2
536
Normal
-0.2
484
Normal
-0.2
412
Normal
-0.2
716
Normal
-0.2
494
Normal
-0.2
365
Tumor
-0.2
528
Normal
-0.2
696
Normal
-0.2
924
Normal
-0.2
786
Normal
-0.2
944
Normal
-0.2
498
Normal
-0.2
954
Normal
-0.2
221
Tumor
-0.2
145
Tumor
-0.2
851
Tumor
-0.2
1014
Normal
-0.2
534
Normal
-0.2
721
Tumor
-0.2
715
Tumor
-0.2
714
Normal
-0.2
516
Normal
-0.2
535
Tumor
-0.2
1044
Normal
-0.2
546
Normal
-0.2
554
Normal
-0.2
142
Normal
-0.2
1041
Tumor
-0.2
526
Normal
-0.2
1042
Normal
-0.2
478
Normal
-0.2
728
Normal
-0.2
493
Tumor
-0.2
425
Tumor
-0.2
756
Normal
-0.2
261
Tumor
-0.2
615
Tumor
-0.2
135
Tumor
-0.2
433
Tumor
-0.2
915
Tumor
-0.2
963
Tumor
-0.2
563
Tumor
-0.2
926
Normal
-0.2
1028
Normal
-0.2
618
Normal
-0.2
538
Normal
-0.2
913
Tumor
-0.2
327
Tumor
-0.2
558
Normal
-0.2
1045
Tumor
-0.2
514
Normal
-0.2
884
Normal
-0.2
852
Normal
-0.2
492
Normal
-0.2
328
Normal
-0.2
1046
Normal
-0.2
627
Tumor
-0.2
975
Tumor
-0.2
955
Tumor
-0.2
617
Tumor
-0.2
922
Normal
-0.2
968
Normal
-0.3
524
Normal
-0.3
481
Tumor
-0.3
1025
Tumor
-0.3
755
Tumor
-0.3
483
Tumor
-0.3
641
Tumor
-0.3
616
Normal
-0.3
916
Normal
-0.3
958
Normal
-0.3
572
Normal
-0.3
937
Tumor
-0.3
415
Tumor
-0.3
817
Tumor
-0.3
785
Tumor
-0.3
471
Tumor
-0.3
1032
Normal
-0.3
1031
Tumor
-0.3
477
Tumor
-0.4
918
Normal
-0.4
967
Tumor
-0.4
513
Tumor
-0.4
473
Tumor
-0.4
553
Tumor
-0.4
921
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
