MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.8 nTPM
HPA Brain:111.2 nTPM
GTEx:48.8 nTPM
FANTOM5:52.0 Scaled Tags Per Million
Pig:58.1 nTPM
Mouse:58.2 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 111.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 104.7
2586 Male, age 75, left hemisphere 147.3
2666 Male, age 74, left hemisphere 126.2
2828 Female, age 72, unknown 120.3
1827 Male, age 72, unknown 102.1
2219 Male, age 76, both hemispheres 99.0
2019 Male, age 18, unknown 96.9
1833 Male, age 53, unknown 92.6
2411 Female, age 72, unknown 88.8
1830 Male, age 51, unknown 87.7
1870 Female, age 42, unknown 86.3
Dorsal raphe nucleus
nTPM: 90.3
1828 Male, age 53, unknown 100.0
2750 Male, age 76, both hemispheres 97.9
2047 Male, age 72, unknown 92.9
2298 Female, age 72, unknown 81.7
2016 Female, age 72, unknown 79.2
Inferior colliculus
nTPM: 88.6
2849 Male, age 72, unknown 90.6
2097 Female, age 72, unknown 90.2
1890 Male, age 53, unknown 89.4
1848 Female, age 42, unknown 84.3
Median raphe nucleus
nTPM: 81.7
2220 Male, age 76, midline 81.7
Periaquaductal grey, anterior
nTPM: 105.0
2502 Female, age 75, unknown 108.1
1795 Male, age 51, unknown 107.2
1947 Male, age 18, unknown 99.8
Periaquaductal grey, dorsal
nTPM: 77.3
2464 Female, age 72, unknown 86.4
1840 Male, age 53, unknown 79.8
1831 Male, age 72, unknown 79.7
2850 Male, age 76, both hemispheres 63.3
Periaquaductal grey, lateral
nTPM: 76.0
2053 Male, age 18, unknown 91.0
2140 Male, age 76, both hemispheres 73.2
2272 Male, age 74, both hemispheres 63.8
Pretectal area
nTPM: 98.5
1816 Male, age 51, unknown 125.4
2007 Male, age 72, unknown 115.4
1817 Female, age 42, unknown 113.8
1944 Female, age 72, unknown 113.6
1815 Male, age 53, unknown 113.5
2407 Male, age 75, both hemispheres 97.2
2667 Female, age 75, unknown 90.8
2316 Male, age 76, right hemisphere 87.4
2825 Male, age 18, unknown 86.7
2224 Female, age 72, unknown 75.3
2273 Male, age 74, both hemispheres 64.4
Red nucleus
nTPM: 95.3
2584 Male, age 75, left hemisphere 125.0
2588 Male, age 74, left hemisphere 108.2
2785 Male, age 18, unknown 98.0
2823 Male, age 76, right hemisphere 97.0
2503 Female, age 72, unknown 95.4
2769 Male, age 72, unknown 94.1
2227 Male, age 72, unknown 92.3
1904 Male, age 53, unknown 90.3
1954 Female, age 42, unknown 88.2
2725 Female, age 75, unknown 88.1
1865 Male, age 51, unknown 87.5
1821 Female, age 72, unknown 78.9
Substantia nigra
nTPM: 111.2
2665 Male, age 74, both hemispheres 139.8
1916 Female, age 42, unknown 135.6
2583 Male, age 75, right hemisphere 122.3
1851 Male, age 51, unknown 120.1
2699 Male, age 18, unknown 103.1
2241 Male, age 72, unknown 101.7
1889 Female, age 72, unknown 101.4
2409 Female, age 72, unknown 101.1
1941 Male, age 53, unknown 98.7
2590 Female, age 75, unknown 88.4
Superior colliculus
nTPM: 104.7
2668 Female, age 75, unknown 142.6
2664 Male, age 75, both hemispheres 126.1
1796 Male, age 53, unknown 115.1
2261 Male, age 18, unknown 109.8
2087 Female, age 72, unknown 108.6
1913 Female, age 42, unknown 95.4
1895 Male, age 76, right hemisphere 92.2
1995 Male, age 72, unknown 88.9
1839 Male, age 51, unknown 88.1
2587 Male, age 74, left hemisphere 80.5
Ventral tegmental area
nTPM: 100.9
2410 Female, age 72, unknown 107.7
2223 Female, age 72, unknown 105.8
1942 Male, age 51, unknown 103.8
1915 Female, age 42, unknown 102.5
2218 Male, age 76, both hemispheres 99.7
2021 Male, age 53, unknown 85.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 48.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.8
Samples: 139

Max nTPM: 77.0
Min nTPM: 26.6
Std nTPM: 11.3
Median nTPM: 48.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 77.0
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 75.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 75.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 74.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 71.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 69.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 68.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 67.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 66.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 66.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 65.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.0
FF:10158-103A5 76 years, female 52.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 58.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.6
Samples: 4

Max nTPM: 53.9
Min nTPM: 41.1
Sample A Female 51.4
Sample B Female 41.1
Sample C Male 53.9
Sample D Male 47.9
Midbrain
nTPM: 58.2
Samples: 4

Max nTPM: 85.3
Min nTPM: 39.9
Sample A Female 50.4
Sample B Female 39.9
Sample C Male 85.3
Sample D Male 57.0
Periaqueductal gray
nTPM: 38.5
Samples: 3

Max nTPM: 41.6
Min nTPM: 34.9
Sample B Female 38.9
Sample C Male 41.6
Sample D Male 34.9
Superior colliculi
nTPM: 54.6
Samples: 4

Max nTPM: 64.0
Min nTPM: 43.1
Sample A Female 55.5
Sample B Female 43.1
Sample C Male 64.0
Sample D Male 55.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 58.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.3
Samples: 4

Max nTPM: 65.9
Min nTPM: 53.9
Sample A Male 65.9
Sample B Male 53.9
Sample C Female 54.7
Sample D Female 58.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
69672880 Antisense, RP_050428_04_F12, Mouse strain C57BL/6J (56 days, male) 4.5

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