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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSPAN14 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
81.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
64.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
53.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
51.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
47.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
45.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
42.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
41.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
41.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
40.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
40.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
37.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
35.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
33.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
32.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
28.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
26.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
26.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
22.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
16.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSPAN14 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.0
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
129.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
31.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
28.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
1.1
363
Tumor
0.9
343
Tumor
0.7
367
Tumor
0.6
983
Tumor
0.6
737
Tumor
0.6
661
Tumor
0.6
477
Tumor
0.6
447
Tumor
0.5
413
Tumor
0.5
536
Normal
0.4
185
Tumor
0.4
125
Tumor
0.4
686
Normal
0.4
815
Tumor
0.4
535
Tumor
0.3
478
Normal
0.3
492
Normal
0.3
538
Normal
0.3
666
Normal
0.3
352
Normal
0.3
262
Normal
0.3
257
Tumor
0.3
917
Tumor
0.3
713
Tumor
0.3
448
Normal
0.3
422
Normal
0.3
456
Normal
0.2
421
Tumor
0.2
464
Normal
0.2
696
Normal
0.2
434
Normal
0.2
911
Tumor
0.2
636
Normal
0.2
142
Normal
0.2
921
Tumor
0.2
573
Tumor
0.2
271
Tumor
0.2
966
Normal
0.2
978
Normal
0.2
344
Normal
0.2
452
Normal
0.2
574
Normal
0.2
385
Tumor
0.2
1028
Normal
0.2
112
Tumor
0.2
384
Normal
0.2
537
Tumor
0.2
211
Tumor
0.2
311
Tumor
0.2
628
Normal
0.2
968
Normal
0.2
268
Normal
0.2
648
Normal
0.2
524
Normal
0.2
662
Normal
0.2
642
Normal
0.2
671
Tumor
0.2
432
Normal
0.2
387
Tumor
0.2
916
Normal
0.2
498
Normal
0.2
554
Normal
0.1
672
Normal
0.1
558
Normal
0.1
328
Normal
0.1
984
Normal
0.1
353
Tumor
0.1
528
Normal
0.1
223
Tumor
0.1
954
Normal
0.1
1025
Tumor
0.1
514
Normal
0.1
284
Normal
0.1
778
Normal
0.1
617
Tumor
0.1
851
Tumor
0.1
412
Normal
0.1
924
Normal
0.1
232
Normal
0.1
468
Normal
0.1
267
Tumor
0.1
852
Normal
0.1
1026
Normal
0.1
188
Normal
0.1
451
Tumor
0.1
491
Tumor
0.1
272
Normal
0.1
455
Tumor
0.1
221
Tumor
0.1
1044
Normal
0.1
354
Normal
0.1
883
Tumor
0.1
816
Normal
0.1
212
Normal
0.1
572
Normal
0.1
416
Normal
0.1
368
Normal
0.1
341
Tumor
0.1
976
Normal
0.1
716
Normal
0.1
1042
Normal
0.1
224
Normal
0.1
443
Tumor
0.1
444
Normal
0.1
664
Normal
0.1
926
Normal
0.1
744
Normal
0.1
332
Normal
0.1
516
Normal
0.1
488
Normal
0.1
415
Tumor
0.1
482
Normal
0.1
218
Normal
0.1
147
Tumor
0.1
414
Normal
0.0
356
Normal
0.0
874
Normal
0.0
526
Normal
0.0
553
Tumor
0.0
981
Tumor
0.0
861
Tumor
0.0
1014
Normal
0.0
364
Normal
0.0
1046
Normal
0.0
1041
Tumor
0.0
714
Normal
0.0
867
Tumor
0.0
466
Normal
0.0
358
Normal
0.0
728
Normal
0.0
474
Normal
0.0
721
Tumor
0.0
424
Normal
0.0
392
Normal
0.0
124
Normal
0.0
127
Tumor
0.0
227
Tumor
0.0
912
Normal
0.0
494
Normal
0.0
484
Normal
0.0
743
Tumor
0.0
428
Normal
0.0
568
Normal
0.0
1022
Normal
0.0
616
Normal
0.0
258
Normal
0.0
824
Normal
0.0
982
Normal
0.0
866
Normal
0.0
138
Normal
0.0
546
Normal
0.0
958
Normal
0.0
462
Normal
0.0
283
Tumor
0.0
564
Normal
0.0
862
Normal
0.0
868
Normal
0.0
722
Normal
0.0
1032
Normal
0.0
925
Tumor
0.0
228
Normal
0.0
471
Tumor
0.0
915
Tumor
0.0
162
Normal
0.0
884
Normal
0.0
745
Tumor
-0.1
426
Normal
-0.1
977
Tumor
-0.1
864
Normal
-0.1
386
Normal
-0.1
217
Tumor
-0.1
146
Normal
-0.1
366
Normal
-0.1
878
Normal
-0.1
727
Tumor
-0.1
261
Tumor
-0.1
742
Normal
-0.1
964
Normal
-0.1
446
Normal
-0.1
823
Tumor
-0.1
187
Tumor
-0.1
918
Normal
-0.1
423
Tumor
-0.1
472
Normal
-0.1
963
Tumor
-0.1
362
Normal
-0.1
922
Normal
-0.1
192
Normal
-0.1
813
Tumor
-0.1
342
Normal
-0.1
396
Normal
-0.1
956
Normal
-0.1
715
Tumor
-0.1
525
Tumor
-0.1
136
Normal
-0.1
286
Normal
-0.1
952
Normal
-0.1
1043
Tumor
-0.1
923
Tumor
-0.1
545
Tumor
-0.1
944
Normal
-0.1
818
Normal
-0.1
518
Normal
-0.1
965
Tumor
-0.1
331
Tumor
-0.1
481
Tumor
-0.1
312
Normal
-0.1
1016
Normal
-0.1
467
Tumor
-0.1
431
Tumor
-0.1
131
Tumor
-0.1
111
Normal
-0.2
567
Tumor
-0.2
938
Normal
-0.2
914
Normal
-0.2
814
Normal
-0.2
126
Normal
-0.2
172
Normal
-0.2
697
Tumor
-0.2
817
Tumor
-0.2
882
Normal
-0.2
738
Normal
-0.2
618
Normal
-0.2
534
Normal
-0.2
132
Normal
-0.2
114
Normal
-0.2
741
Tumor
-0.2
955
Tumor
-0.2
563
Tumor
-0.2
858
Normal
-0.2
145
Tumor
-0.2
436
Normal
-0.2
186
Normal
-0.2
214
Normal
-0.2
698
Normal
-0.2
213
Tumor
-0.2
943
Tumor
-0.2
695
Tumor
-0.2
953
Tumor
-0.2
615
Tumor
-0.2
724
Normal
-0.2
141
Tumor
-0.2
533
Tumor
-0.2
128
Normal
-0.2
391
Tumor
-0.2
857
Tumor
-0.2
355
Tumor
-0.2
376
Normal
-0.2
877
Tumor
-0.2
148
Normal
-0.3
517
Tumor
-0.3
493
Tumor
-0.3
425
Tumor
-0.3
723
Tumor
-0.3
685
Tumor
-0.3
497
Tumor
-0.3
388
Normal
-0.3
297
Tumor
-0.3
975
Tumor
-0.3
435
Tumor
-0.3
394
Normal
-0.3
463
Tumor
-0.3
461
Tumor
-0.3
222
Normal
-0.3
746
Normal
-0.3
383
Tumor
-0.3
1015
Tumor
-0.3
357
Tumor
-0.3
473
Tumor
-0.3
327
Tumor
-0.3
113
Tumor
-0.3
433
Tumor
-0.3
1031
Tumor
-0.3
298
Normal
-0.3
135
Tumor
-0.3
427
Tumor
-0.3
465
Tumor
-0.3
785
Tumor
-0.3
937
Tumor
-0.3
881
Tumor
-0.3
647
Tumor
-0.3
278
Normal
-0.4
1045
Tumor
-0.4
231
Tumor
-0.4
445
Tumor
-0.4
171
Tumor
-0.4
483
Tumor
-0.4
395
Tumor
-0.4
196
Normal
-0.4
1027
Tumor
-0.4
161
Tumor
-0.4
411
Tumor
-0.4
786
Normal
-0.4
314
Normal
-0.4
873
Tumor
-0.4
361
Tumor
-0.5
513
Tumor
-0.5
641
Tumor
-0.5
195
Tumor
-0.5
277
Tumor
-0.5
665
Tumor
-0.5
756
Normal
-0.5
515
Tumor
-0.5
967
Tumor
-0.5
957
Tumor
-0.5
863
Tumor
-0.5
523
Tumor
-0.6
557
Tumor
-0.6
755
Tumor
-0.6
137
Tumor
-0.6
351
Tumor
-0.6
487
Tumor
-0.6
627
Tumor
-0.6
365
Tumor
-0.6
635
Tumor
-0.7
913
Tumor
-0.7
191
Tumor
-0.7
571
Tumor
-0.7
393
Tumor
-0.7
777
Tumor
-0.7
375
Tumor
-0.7
663
Tumor
-0.7
1021
Tumor
-0.7
527
Tumor
-0.8
1013
Tumor
-0.8
951
Tumor
-0.8
123
Tumor
-0.9
313
Tumor
-1.0
865
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
