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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPIF is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
267.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
229.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
212.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
203.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
184.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
162.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
143.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
141.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
139.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
134.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
133.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
133.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
127.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
126.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
125.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
122.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
121.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
121.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
120.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
119.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
117.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
115.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
114.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
110.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
110.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
108.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
106.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
106.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
105.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
104.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
104.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
104.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
103.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
102.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
101.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
100.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
99.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
99.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
95.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
95.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
94.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
94.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
94.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
93.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
93.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
93.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
92.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
92.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
91.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
91.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
89.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
88.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
87.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
87.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
86.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
86.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
84.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
84.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
83.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
83.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
83.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
82.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
81.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
81.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
81.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
81.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
80.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
80.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
79.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
79.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
78.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
78.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
77.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
77.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
77.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
77.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
76.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
75.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
75.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
75.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
75.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
74.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
74.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
74.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
73.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
73.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
72.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
72.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
72.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
72.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
72.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
71.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
71.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
71.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
70.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
69.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
69.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
69.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
69.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
69.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
68.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
68.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
68.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
68.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
67.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
67.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
67.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
66.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
66.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
66.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
66.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
66.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
66.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
65.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
64.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
63.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
63.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
63.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
63.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
63.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
62.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
62.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
62.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
62.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
62.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
62.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
61.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
60.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
60.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
60.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
59.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
59.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
59.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
59.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
58.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
58.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
58.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
58.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
58.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
57.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
57.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
57.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
57.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
57.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
57.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
56.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
56.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
55.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
55.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
55.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
55.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
55.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
55.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
54.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
54.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
54.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
54.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
54.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
54.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
54.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
53.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
53.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
53.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
53.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
52.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
52.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
52.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
52.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
51.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
51.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
51.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
51.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
51.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
51.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
50.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
50.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
50.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
50.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
49.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
49.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
49.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
49.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
49.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
49.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
49.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
49.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
48.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
48.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
48.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
48.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
48.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
48.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
47.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
47.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
47.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
47.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
47.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
47.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
46.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
46.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
46.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
46.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
46.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
46.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
45.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
45.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
45.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
45.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
45.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
45.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
44.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
44.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
44.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
44.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
43.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
43.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
43.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
43.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
43.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
43.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
42.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
42.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
42.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
42.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
42.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
42.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
42.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
41.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
41.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
41.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
41.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
41.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
41.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
41.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
41.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
41.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
40.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
40.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
40.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
40.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
40.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
39.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
39.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
39.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
39.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
39.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
38.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
38.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
38.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
38.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
38.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
38.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
38.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
37.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
37.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
37.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
37.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
37.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
37.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
37.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
36.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
36.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
36.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
36.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
35.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
35.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
35.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
35.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
35.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
35.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
35.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
35.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
34.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
34.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
34.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
34.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
34.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
33.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
33.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
33.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
33.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
32.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
32.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
32.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
31.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
31.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
31.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
31.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
31.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
31.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
30.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
30.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
30.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
30.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
30.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
29.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
29.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
29.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
29.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
28.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
28.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
26.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
26.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
25.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
24.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
24.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
24.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
24.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
23.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
23.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
21.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPIF is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
51.5
Number of samples
231
Samples
Sample
Description
TPM
DO23508
0 years, female, NA, stage:2, alive, 390 days
187.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
167.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
154.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
153.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
142.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
139.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
136.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
133.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
130.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
113.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
109.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
105.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
103.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
103.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
103.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
100.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
100.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
91.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
87.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
85.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
84.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
84.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
83.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
83.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
82.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
82.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
80.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
79.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
79.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
79.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
78.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
78.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
78.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
78.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
76.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
76.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
75.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
75.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
74.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
71.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
71.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
70.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
70.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
69.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
68.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
68.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
68.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
67.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
67.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
66.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
65.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
64.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
64.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
64.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
64.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
64.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
63.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
63.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
63.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
63.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
62.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
62.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
61.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
61.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
61.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
60.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
60.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
59.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
58.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
56.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
55.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
55.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
54.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
54.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
54.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
54.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
53.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
53.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
53.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
53.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
53.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
52.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
51.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
51.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
51.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
51.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
50.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
50.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
50.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
50.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
50.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
50.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
50.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
50.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
50.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
50.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
49.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
49.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
48.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
48.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
48.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
47.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
47.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
47.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
47.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
46.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
46.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
46.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
46.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
45.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
45.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
45.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
45.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
45.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
45.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
45.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
44.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
44.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
44.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
44.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
44.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
44.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
44.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
43.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
43.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
43.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
43.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
43.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
43.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
42.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
42.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
42.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
42.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
42.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
42.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
41.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
41.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
41.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
41.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
40.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
40.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
40.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
40.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
40.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
40.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
39.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
39.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
39.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
39.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
38.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
38.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
38.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
38.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
38.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
37.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
37.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
37.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
37.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
36.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
36.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
35.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
35.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
34.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
34.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
34.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
33.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
33.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
33.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
32.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
32.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
32.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
32.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
32.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
32.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
31.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
31.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
30.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
29.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
28.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
28.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
27.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
27.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
26.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1043
Tumor
1.3
436
Normal
1.1
571
Tumor
1.0
428
Normal
1.0
534
Normal
0.9
824
Normal
0.9
328
Normal
0.9
858
Normal
0.9
1027
Tumor
0.8
416
Normal
0.8
756
Normal
0.8
411
Tumor
0.8
462
Normal
0.8
728
Normal
0.8
414
Normal
0.8
424
Normal
0.7
472
Normal
0.7
755
Tumor
0.7
356
Normal
0.7
162
Normal
0.7
863
Tumor
0.7
695
Tumor
0.7
513
Tumor
0.7
882
Normal
0.7
227
Tumor
0.7
627
Tumor
0.6
518
Normal
0.6
742
Normal
0.6
482
Normal
0.6
862
Normal
0.6
466
Normal
0.6
537
Tumor
0.6
884
Normal
0.6
785
Tumor
0.6
868
Normal
0.6
1046
Normal
0.6
553
Tumor
0.6
944
Normal
0.5
664
Normal
0.5
1016
Normal
0.5
422
Normal
0.5
964
Normal
0.5
172
Normal
0.5
423
Tumor
0.5
777
Tumor
0.5
912
Normal
0.5
918
Normal
0.5
696
Normal
0.5
1032
Normal
0.5
866
Normal
0.5
921
Tumor
0.5
864
Normal
0.5
698
Normal
0.5
484
Normal
0.5
514
Normal
0.5
1026
Normal
0.5
786
Normal
0.5
212
Normal
0.5
1042
Normal
0.5
746
Normal
0.5
922
Normal
0.4
516
Normal
0.4
924
Normal
0.4
958
Normal
0.4
494
Normal
0.4
546
Normal
0.4
136
Normal
0.4
857
Tumor
0.4
938
Normal
0.4
1022
Normal
0.4
723
Tumor
0.4
738
Normal
0.4
222
Normal
0.4
142
Normal
0.3
982
Normal
0.3
628
Normal
0.3
957
Tumor
0.3
432
Normal
0.3
714
Normal
0.3
926
Normal
0.3
214
Normal
0.3
262
Normal
0.3
412
Normal
0.3
745
Tumor
0.3
465
Tumor
0.3
978
Normal
0.3
474
Normal
0.3
186
Normal
0.3
915
Tumor
0.3
526
Normal
0.3
232
Normal
0.3
956
Normal
0.3
138
Normal
0.3
272
Normal
0.3
914
Normal
0.3
716
Normal
0.2
257
Tumor
0.2
874
Normal
0.2
361
Tumor
0.2
327
Tumor
0.2
727
Tumor
0.2
616
Normal
0.2
976
Normal
0.2
396
Normal
0.2
148
Normal
0.2
426
Normal
0.2
481
Tumor
0.2
1025
Tumor
0.2
916
Normal
0.2
366
Normal
0.2
473
Tumor
0.2
284
Normal
0.2
818
Normal
0.2
953
Tumor
0.2
564
Normal
0.2
452
Normal
0.2
618
Normal
0.2
488
Normal
0.2
1014
Normal
0.2
314
Normal
0.2
722
Normal
0.2
286
Normal
0.2
572
Normal
0.2
925
Tumor
0.1
615
Tumor
0.1
464
Normal
0.1
363
Tumor
0.1
362
Normal
0.1
966
Normal
0.1
111
Normal
0.1
968
Normal
0.1
568
Normal
0.1
662
Normal
0.1
816
Normal
0.1
477
Tumor
0.1
147
Tumor
0.1
1045
Tumor
0.1
567
Tumor
0.1
364
Normal
0.1
271
Tumor
0.1
128
Normal
0.1
967
Tumor
0.1
298
Normal
0.1
713
Tumor
0.0
188
Normal
0.0
574
Normal
0.0
388
Normal
0.0
376
Normal
0.0
228
Normal
0.0
312
Normal
0.0
448
Normal
0.0
528
Normal
0.0
963
Tumor
0.0
468
Normal
0.0
554
Normal
0.0
1044
Normal
0.0
852
Normal
0.0
114
Normal
0.0
686
Normal
0.0
517
Tumor
0.0
666
Normal
0.0
446
Normal
0.0
648
Normal
0.0
196
Normal
0.0
1013
Tumor
0.0
867
Tumor
0.0
358
Normal
0.0
394
Normal
0.0
267
Tumor
0.0
981
Tumor
-0.1
1028
Normal
-0.1
278
Normal
-0.1
393
Tumor
-0.1
636
Normal
-0.1
878
Normal
-0.1
1031
Tumor
-0.1
461
Tumor
-0.1
954
Normal
-0.1
491
Tumor
-0.1
557
Tumor
-0.1
911
Tumor
-0.1
873
Tumor
-0.1
515
Tumor
-0.1
342
Normal
-0.1
558
Normal
-0.1
642
Normal
-0.1
146
Normal
-0.2
741
Tumor
-0.2
415
Tumor
-0.2
258
Normal
-0.2
1041
Tumor
-0.2
434
Normal
-0.2
955
Tumor
-0.2
823
Tumor
-0.2
231
Tumor
-0.2
221
Tumor
-0.2
355
Tumor
-0.2
525
Tumor
-0.2
977
Tumor
-0.2
744
Normal
-0.2
421
Tumor
-0.2
483
Tumor
-0.3
984
Normal
-0.3
171
Tumor
-0.3
451
Tumor
-0.3
224
Normal
-0.3
352
Normal
-0.3
533
Tumor
-0.3
365
Tumor
-0.3
456
Normal
-0.3
218
Normal
-0.3
145
Tumor
-0.3
778
Normal
-0.3
261
Tumor
-0.3
492
Normal
-0.3
523
Tumor
-0.3
392
Normal
-0.3
344
Normal
-0.3
923
Tumor
-0.3
433
Tumor
-0.3
965
Tumor
-0.3
386
Normal
-0.3
937
Tumor
-0.4
435
Tumor
-0.4
127
Tumor
-0.4
881
Tumor
-0.4
538
Normal
-0.4
573
Tumor
-0.4
883
Tumor
-0.4
697
Tumor
-0.4
721
Tumor
-0.4
354
Normal
-0.4
353
Tumor
-0.4
861
Tumor
-0.4
268
Normal
-0.4
368
Normal
-0.4
332
Normal
-0.5
431
Tumor
-0.5
536
Normal
-0.5
137
Tumor
-0.5
471
Tumor
-0.5
524
Normal
-0.5
113
Tumor
-0.5
498
Normal
-0.5
975
Tumor
-0.5
126
Normal
-0.5
341
Tumor
-0.5
737
Tumor
-0.5
444
Normal
-0.6
563
Tumor
-0.6
635
Tumor
-0.6
132
Normal
-0.6
478
Normal
-0.6
743
Tumor
-0.6
455
Tumor
-0.6
192
Normal
-0.6
1021
Tumor
-0.6
141
Tumor
-0.6
865
Tumor
-0.6
815
Tumor
-0.6
851
Tumor
-0.6
447
Tumor
-0.6
983
Tumor
-0.7
535
Tumor
-0.7
443
Tumor
-0.7
943
Tumor
-0.7
351
Tumor
-0.7
391
Tumor
-0.7
161
Tumor
-0.7
672
Normal
-0.7
487
Tumor
-0.7
877
Tumor
-0.7
125
Tumor
-0.7
384
Normal
-0.7
641
Tumor
-0.7
425
Tumor
-0.7
497
Tumor
-0.8
285
Tumor
-0.8
217
Tumor
-0.8
277
Tumor
-0.8
493
Tumor
-0.8
297
Tumor
-0.8
617
Tumor
-0.8
685
Tumor
-0.8
917
Tumor
-0.8
124
Normal
-0.8
952
Normal
-0.8
185
Tumor
-0.8
191
Tumor
-0.8
724
Normal
-0.8
223
Tumor
-0.8
1015
Tumor
-0.8
445
Tumor
-0.8
135
Tumor
-0.8
427
Tumor
-0.8
213
Tumor
-0.9
385
Tumor
-0.9
123
Tumor
-0.9
545
Tumor
-0.9
195
Tumor
-0.9
467
Tumor
-0.9
367
Tumor
-0.9
951
Tumor
-1.0
527
Tumor
-1.0
814
Normal
-1.0
211
Tumor
-1.0
187
Tumor
-1.0
817
Tumor
-1.0
647
Tumor
-1.0
913
Tumor
-1.0
357
Tumor
-1.1
112
Tumor
-1.1
387
Tumor
-1.1
413
Tumor
-1.1
715
Tumor
-1.1
313
Tumor
-1.1
671
Tumor
-1.2
343
Tumor
-1.2
375
Tumor
-1.2
661
Tumor
-1.2
395
Tumor
-1.2
463
Tumor
-1.2
663
Tumor
-1.2
813
Tumor
-1.3
665
Tumor
-1.3
383
Tumor
-1.4
283
Tumor
-1.4
131
Tumor
-1.5
331
Tumor
-1.5
311
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.