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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SHOC2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SHOC2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.2
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
921
Tumor
0.9
271
Tumor
0.7
1025
Tumor
0.6
1031
Tumor
0.5
937
Tumor
0.5
147
Tumor
0.5
553
Tumor
0.5
881
Tumor
0.5
967
Tumor
0.4
131
Tumor
0.4
455
Tumor
0.4
975
Tumor
0.4
641
Tumor
0.4
363
Tumor
0.4
221
Tumor
0.3
915
Tumor
0.3
517
Tumor
0.3
817
Tumor
0.3
823
Tumor
0.3
1043
Tumor
0.3
1016
Normal
0.3
481
Tumor
0.3
966
Normal
0.3
431
Tumor
0.3
327
Tumor
0.3
982
Normal
0.3
223
Tumor
0.3
958
Normal
0.3
965
Tumor
0.3
355
Tumor
0.3
957
Tumor
0.3
978
Normal
0.3
415
Tumor
0.3
126
Normal
0.3
1021
Tumor
0.2
533
Tumor
0.2
1042
Normal
0.2
528
Normal
0.2
912
Normal
0.2
572
Normal
0.2
557
Tumor
0.2
227
Tumor
0.2
473
Tumor
0.2
743
Tumor
0.2
1032
Normal
0.2
723
Tumor
0.2
262
Normal
0.2
1014
Normal
0.2
964
Normal
0.2
1027
Tumor
0.2
968
Normal
0.2
738
Normal
0.2
435
Tumor
0.2
852
Normal
0.2
824
Normal
0.2
984
Normal
0.2
955
Tumor
0.2
534
Normal
0.2
713
Tumor
0.2
314
Normal
0.2
858
Normal
0.2
917
Tumor
0.2
963
Tumor
0.2
818
Normal
0.2
261
Tumor
0.2
884
Normal
0.2
916
Normal
0.2
697
Tumor
0.2
462
Normal
0.2
331
Tumor
0.2
925
Tumor
0.2
666
Normal
0.2
816
Normal
0.2
482
Normal
0.2
467
Tumor
0.2
727
Tumor
0.2
416
Normal
0.2
564
Normal
0.2
716
Normal
0.2
228
Normal
0.1
756
Normal
0.1
297
Tumor
0.1
231
Tumor
0.1
882
Normal
0.1
1046
Normal
0.1
135
Tumor
0.1
714
Normal
0.1
648
Normal
0.1
466
Normal
0.1
311
Tumor
0.1
628
Normal
0.1
213
Tumor
0.1
472
Normal
0.1
278
Normal
0.1
268
Normal
0.1
364
Normal
0.1
867
Tumor
0.1
938
Normal
0.1
728
Normal
0.1
951
Tumor
0.1
514
Normal
0.1
664
Normal
0.1
923
Tumor
0.1
686
Normal
0.1
536
Normal
0.1
421
Tumor
0.1
944
Normal
0.1
1022
Normal
0.1
924
Normal
0.1
125
Tumor
0.1
171
Tumor
0.1
136
Normal
0.1
518
Normal
0.1
537
Tumor
0.1
192
Normal
0.1
662
Normal
0.1
647
Tumor
0.1
554
Normal
0.1
448
Normal
0.1
224
Normal
0.1
567
Tumor
0.1
786
Normal
0.1
1026
Normal
0.1
332
Normal
0.1
412
Normal
0.1
474
Normal
0.1
568
Normal
0.1
1041
Tumor
0.1
636
Normal
0.1
926
Normal
0.1
523
Tumor
0.1
914
Normal
0.1
286
Normal
0.1
616
Normal
0.1
618
Normal
0.1
471
Tumor
0.1
922
Normal
0.1
742
Normal
0.1
722
Normal
0.1
298
Normal
0.1
232
Normal
0.1
864
Normal
0.1
868
Normal
0.1
976
Normal
0.1
132
Normal
0.1
815
Tumor
0.1
312
Normal
0.1
488
Normal
0.1
272
Normal
0.1
257
Tumor
0.1
145
Tumor
0.1
188
Normal
0.1
366
Normal
0.1
953
Tumor
0.1
862
Normal
0.1
546
Normal
0.1
396
Normal
0.1
878
Normal
0.1
456
Normal
0.1
695
Tumor
0.1
142
Normal
0.1
187
Tumor
0.1
883
Tumor
0.0
162
Normal
0.0
191
Tumor
0.0
493
Tumor
0.0
414
Normal
0.0
563
Tumor
0.0
146
Normal
0.0
422
Normal
0.0
394
Normal
0.0
464
Normal
0.0
362
Normal
0.0
484
Normal
0.0
222
Normal
0.0
376
Normal
0.0
424
Normal
0.0
526
Normal
0.0
196
Normal
0.0
698
Normal
0.0
851
Tumor
0.0
494
Normal
0.0
413
Tumor
0.0
672
Normal
0.0
1028
Normal
0.0
113
Tumor
0.0
148
Normal
0.0
737
Tumor
0.0
343
Tumor
0.0
814
Normal
0.0
715
Tumor
0.0
911
Tumor
0.0
368
Normal
0.0
395
Tumor
0.0
285
Tumor
0.0
877
Tumor
0.0
444
Normal
0.0
218
Normal
0.0
721
Tumor
0.0
128
Normal
0.0
447
Tumor
0.0
284
Normal
0.0
217
Tumor
0.0
277
Tumor
0.0
478
Normal
0.0
392
Normal
0.0
428
Normal
0.0
212
Normal
0.0
954
Normal
0.0
127
Tumor
0.0
258
Normal
0.0
436
Normal
N/A
465
Tumor
0.0
356
Normal
0.0
498
Normal
0.0
328
Normal
0.0
1044
Normal
0.0
746
Normal
0.0
866
Normal
0.0
558
Normal
0.0
138
Normal
0.0
545
Tumor
0.0
111
Normal
0.0
696
Normal
0.0
468
Normal
0.0
857
Tumor
0.0
918
Normal
0.0
617
Tumor
0.0
741
Tumor
0.0
411
Tumor
0.0
351
Tumor
0.0
123
Tumor
0.0
755
Tumor
0.0
432
Normal
0.0
574
Normal
0.0
186
Normal
0.0
661
Tumor
0.0
443
Tumor
0.0
483
Tumor
0.0
385
Tumor
0.0
956
Normal
0.0
214
Normal
0.0
341
Tumor
0.0
451
Tumor
0.0
384
Normal
0.0
983
Tumor
0.0
185
Tumor
-0.1
952
Normal
-0.1
744
Normal
-0.1
425
Tumor
-0.1
352
Normal
-0.1
386
Normal
-0.1
492
Normal
-0.1
211
Tumor
-0.1
524
Normal
-0.1
943
Tumor
-0.1
434
Normal
-0.1
861
Tumor
-0.1
724
Normal
-0.1
354
Normal
-0.1
388
Normal
-0.1
426
Normal
-0.1
172
Normal
-0.1
873
Tumor
-0.1
358
Normal
-0.1
778
Normal
-0.1
195
Tumor
-0.1
393
Tumor
-0.1
446
Normal
-0.1
461
Tumor
-0.1
114
Normal
-0.1
745
Tumor
-0.1
535
Tumor
-0.1
353
Tumor
-0.1
874
Normal
-0.1
538
Normal
-0.1
785
Tumor
-0.1
813
Tumor
-0.1
981
Tumor
-0.1
283
Tumor
-0.1
671
Tumor
-0.1
516
Normal
-0.1
387
Tumor
-0.1
977
Tumor
-0.1
477
Tumor
-0.1
342
Normal
-0.1
141
Tumor
-0.2
391
Tumor
-0.2
635
Tumor
-0.2
642
Normal
-0.2
685
Tumor
-0.2
913
Tumor
-0.2
367
Tumor
-0.2
267
Tumor
-0.2
137
Tumor
-0.2
124
Normal
-0.2
433
Tumor
-0.2
1045
Tumor
-0.2
615
Tumor
-0.2
344
Normal
-0.2
571
Tumor
-0.2
865
Tumor
-0.2
383
Tumor
-0.2
375
Tumor
-0.2
463
Tumor
-0.2
513
Tumor
-0.2
665
Tumor
-0.2
361
Tumor
-0.2
427
Tumor
-0.2
515
Tumor
-0.2
161
Tumor
-0.3
365
Tumor
-0.3
452
Normal
-0.3
777
Tumor
-0.3
863
Tumor
-0.3
527
Tumor
-0.3
573
Tumor
-0.3
663
Tumor
-0.3
491
Tumor
-0.3
313
Tumor
-0.3
1015
Tumor
-0.3
525
Tumor
-0.3
487
Tumor
-0.3
357
Tumor
-0.4
112
Tumor
-0.4
497
Tumor
-0.4
627
Tumor
-0.5
445
Tumor
-0.6
423
Tumor
-0.6
1013
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
