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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LARP4B is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
33.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LARP4B is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.7
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
40.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.2
865
Tumor
1.1
663
Tumor
1.1
497
Tumor
1.0
123
Tumor
1.0
283
Tumor
0.9
957
Tumor
0.9
661
Tumor
0.9
425
Tumor
0.9
697
Tumor
0.8
1027
Tumor
0.8
537
Tumor
0.8
685
Tumor
0.8
724
Normal
0.8
311
Tumor
0.8
815
Tumor
0.8
331
Tumor
0.7
553
Tumor
0.7
211
Tumor
0.7
953
Tumor
0.7
983
Tumor
0.7
313
Tumor
0.7
921
Tumor
0.7
515
Tumor
0.7
641
Tumor
0.7
357
Tumor
0.6
777
Tumor
0.6
411
Tumor
0.6
951
Tumor
0.6
385
Tumor
0.6
1025
Tumor
0.6
221
Tumor
0.6
567
Tumor
0.6
533
Tumor
0.6
737
Tumor
0.6
883
Tumor
0.5
881
Tumor
0.5
395
Tumor
0.5
967
Tumor
0.5
367
Tumor
0.5
813
Tumor
0.5
557
Tumor
0.5
937
Tumor
0.5
413
Tumor
0.5
131
Tumor
0.5
427
Tumor
0.5
267
Tumor
0.5
351
Tumor
0.5
525
Tumor
0.5
535
Tumor
0.4
1021
Tumor
0.4
851
Tumor
0.4
343
Tumor
0.4
161
Tumor
0.4
817
Tumor
0.4
943
Tumor
0.4
695
Tumor
0.4
327
Tumor
0.4
493
Tumor
0.4
743
Tumor
0.4
125
Tumor
0.4
965
Tumor
0.4
477
Tumor
0.4
545
Tumor
0.4
913
Tumor
0.3
573
Tumor
0.3
617
Tumor
0.3
923
Tumor
0.3
463
Tumor
0.3
483
Tumor
0.3
471
Tumor
0.3
491
Tumor
0.3
257
Tumor
0.3
383
Tumor
0.3
1041
Tumor
0.3
1043
Tumor
0.3
527
Tumor
0.3
823
Tumor
0.3
297
Tumor
0.3
523
Tumor
0.3
1015
Tumor
0.3
285
Tumor
0.3
191
Tumor
0.3
431
Tumor
0.3
925
Tumor
0.2
113
Tumor
0.2
955
Tumor
0.2
671
Tumor
0.2
975
Tumor
0.2
814
Normal
0.2
277
Tumor
0.2
213
Tumor
0.2
513
Tumor
0.2
135
Tumor
0.2
355
Tumor
0.2
365
Tumor
0.2
727
Tumor
0.2
231
Tumor
0.2
461
Tumor
0.2
421
Tumor
0.2
571
Tumor
0.2
665
Tumor
0.2
877
Tumor
0.2
467
Tumor
0.2
223
Tumor
0.2
451
Tumor
0.2
187
Tumor
0.2
755
Tumor
0.2
271
Tumor
0.2
447
Tumor
0.2
171
Tumor
0.2
455
Tumor
0.2
112
Tumor
0.2
217
Tumor
0.2
361
Tumor
0.2
141
Tumor
0.1
524
Normal
0.1
443
Tumor
0.1
147
Tumor
0.1
536
Normal
0.1
1031
Tumor
0.1
517
Tumor
0.1
873
Tumor
0.1
473
Tumor
0.1
977
Tumor
0.1
145
Tumor
0.1
917
Tumor
0.1
861
Tumor
0.1
375
Tumor
0.1
713
Tumor
0.1
227
Tumor
0.1
391
Tumor
0.1
341
Tumor
0.1
863
Tumor
0.1
387
Tumor
0.0
393
Tumor
0.0
963
Tumor
0.0
433
Tumor
0.0
195
Tumor
0.0
912
Normal
0.0
312
Normal
0.0
721
Tumor
0.0
966
Normal
0.0
268
Normal
0.0
715
Tumor
0.0
884
Normal
0.0
328
Normal
0.0
314
Normal
0.0
911
Tumor
0.0
366
Normal
0.0
262
Normal
0.0
978
Normal
0.0
363
Tumor
0.0
492
Normal
0.0
1028
Normal
0.0
628
Normal
0.0
185
Tumor
0.0
857
Tumor
0.0
278
Normal
0.0
188
Normal
0.0
137
Tumor
0.0
526
Normal
0.0
741
Tumor
0.0
434
Normal
-0.1
647
Tumor
-0.1
423
Tumor
-0.1
465
Tumor
-0.1
498
Normal
-0.1
222
Normal
-0.1
332
Normal
-0.1
456
Normal
-0.1
852
Normal
-0.1
127
Tumor
-0.1
1026
Normal
-0.1
258
Normal
-0.1
785
Tumor
-0.1
484
Normal
-0.1
635
Tumor
-0.1
518
Normal
-0.1
186
Normal
-0.1
362
Normal
-0.1
914
Normal
-0.1
368
Normal
-0.1
468
Normal
-0.1
956
Normal
-0.1
284
Normal
-0.1
944
Normal
-0.1
218
Normal
-0.1
286
Normal
-0.1
874
Normal
-0.1
514
Normal
-0.1
435
Tumor
-0.1
298
Normal
-0.1
878
Normal
-0.1
952
Normal
-0.1
866
Normal
-0.1
627
Tumor
-0.1
882
Normal
-0.1
353
Tumor
-0.1
528
Normal
-0.1
415
Tumor
-0.1
224
Normal
-0.1
212
Normal
-0.1
981
Tumor
-0.1
662
Normal
-0.1
563
Tumor
-0.1
1016
Normal
-0.1
864
Normal
-0.1
648
Normal
-0.1
261
Tumor
-0.1
228
Normal
-0.1
136
Normal
-0.1
915
Tumor
-0.1
868
Normal
-0.1
714
Normal
-0.2
192
Normal
-0.2
1014
Normal
-0.2
538
Normal
-0.2
926
Normal
-0.2
384
Normal
-0.2
916
Normal
-0.2
416
Normal
-0.2
494
Normal
-0.2
982
Normal
-0.2
396
Normal
-0.2
666
Normal
-0.2
272
Normal
-0.2
126
Normal
-0.2
452
Normal
-0.2
464
Normal
-0.2
487
Tumor
-0.2
364
Normal
-0.2
664
Normal
-0.2
446
Normal
-0.2
478
Normal
-0.2
858
Normal
-0.2
444
Normal
-0.2
386
Normal
-0.2
114
Normal
-0.2
356
Normal
-0.2
696
Normal
-0.2
968
Normal
-0.2
232
Normal
-0.2
636
Normal
-0.2
728
Normal
-0.2
534
Normal
-0.2
778
Normal
-0.2
816
Normal
-0.2
436
Normal
-0.2
954
Normal
-0.2
922
Normal
-0.2
474
Normal
-0.2
723
Tumor
-0.2
918
Normal
-0.2
172
Normal
-0.2
938
Normal
-0.2
148
Normal
-0.2
214
Normal
-0.2
546
Normal
-0.2
824
Normal
-0.2
516
Normal
-0.2
558
Normal
-0.2
984
Normal
-0.2
412
Normal
-0.2
376
Normal
-0.2
466
Normal
-0.2
481
Tumor
-0.2
686
Normal
-0.2
196
Normal
-0.2
746
Normal
-0.2
716
Normal
-0.2
722
Normal
-0.2
132
Normal
-0.2
672
Normal
-0.2
738
Normal
-0.2
554
Normal
-0.2
867
Tumor
-0.2
111
Normal
-0.3
448
Normal
-0.3
124
Normal
-0.3
862
Normal
-0.3
615
Tumor
-0.3
392
Normal
-0.3
138
Normal
-0.3
488
Normal
-0.3
1044
Normal
-0.3
976
Normal
-0.3
1022
Normal
-0.3
394
Normal
-0.3
162
Normal
-0.3
1045
Tumor
-0.3
358
Normal
-0.3
742
Normal
-0.3
924
Normal
-0.3
472
Normal
-0.3
142
Normal
-0.3
388
Normal
-0.3
1042
Normal
-0.3
958
Normal
-0.3
445
Tumor
-0.3
424
Normal
-0.3
818
Normal
-0.3
1046
Normal
-0.3
574
Normal
-0.3
146
Normal
-0.3
344
Normal
-0.3
462
Normal
-0.3
482
Normal
-0.3
964
Normal
-0.3
744
Normal
-0.4
1032
Normal
-0.4
564
Normal
-0.4
354
Normal
-0.4
756
Normal
-0.4
745
Tumor
-0.4
422
Normal
-0.4
616
Normal
-0.4
568
Normal
-0.4
352
Normal
-0.4
572
Normal
-0.4
642
Normal
-0.4
432
Normal
-0.4
426
Normal
-0.4
786
Normal
-0.4
128
Normal
-0.5
698
Normal
-0.5
414
Normal
-0.5
428
Normal
-0.5
342
Normal
-0.6
618
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
