MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.1 nTPM
HPA Brain:58.5 nTPM
GTEx:14.1 nTPM
FANTOM5:55.5 Scaled Tags Per Million
Pig:47.1 nTPM
Mouse:13.6 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 58.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.2
2586 Male, age 75, left hemisphere 57.5
2666 Male, age 74, left hemisphere 50.1
2219 Male, age 76, both hemispheres 41.8
2019 Male, age 18, unknown 41.4
1827 Male, age 72, unknown 40.2
2828 Female, age 72, unknown 39.3
1833 Male, age 53, unknown 38.0
1830 Male, age 51, unknown 32.4
1870 Female, age 42, unknown 31.1
2411 Female, age 72, unknown 30.6
Dorsal raphe nucleus
nTPM: 36.1
2298 Female, age 72, unknown 37.8
1828 Male, age 53, unknown 36.8
2016 Female, age 72, unknown 36.8
2047 Male, age 72, unknown 36.2
2750 Male, age 76, both hemispheres 32.8
Inferior colliculus
nTPM: 35.1
1890 Male, age 53, unknown 37.1
2097 Female, age 72, unknown 37.1
2849 Male, age 72, unknown 35.0
1848 Female, age 42, unknown 31.2
Median raphe nucleus
nTPM: 36.5
2220 Male, age 76, midline 36.5
Periaquaductal grey, anterior
nTPM: 39.0
2502 Female, age 75, unknown 42.4
1947 Male, age 18, unknown 37.7
1795 Male, age 51, unknown 36.9
Periaquaductal grey, dorsal
nTPM: 36.0
2850 Male, age 76, both hemispheres 39.4
1831 Male, age 72, unknown 38.8
1840 Male, age 53, unknown 37.0
2464 Female, age 72, unknown 28.7
Periaquaductal grey, lateral
nTPM: 34.6
2140 Male, age 76, both hemispheres 39.8
2272 Male, age 74, both hemispheres 35.1
2053 Male, age 18, unknown 29.0
Pretectal area
nTPM: 40.1
1816 Male, age 51, unknown 51.9
1944 Female, age 72, unknown 48.4
1815 Male, age 53, unknown 46.0
1817 Female, age 42, unknown 45.2
2007 Male, age 72, unknown 44.3
2667 Female, age 75, unknown 41.7
2407 Male, age 75, both hemispheres 40.2
2825 Male, age 18, unknown 34.1
2224 Female, age 72, unknown 33.5
2316 Male, age 76, right hemisphere 29.9
2273 Male, age 74, both hemispheres 26.1
Red nucleus
nTPM: 35.5
2584 Male, age 75, left hemisphere 43.9
2725 Female, age 75, unknown 40.1
1821 Female, age 72, unknown 38.8
2785 Male, age 18, unknown 38.0
2823 Male, age 76, right hemisphere 36.7
2588 Male, age 74, left hemisphere 36.3
2769 Male, age 72, unknown 35.1
1904 Male, age 53, unknown 33.7
1954 Female, age 42, unknown 32.3
2227 Male, age 72, unknown 32.3
1865 Male, age 51, unknown 31.0
2503 Female, age 72, unknown 27.7
Substantia nigra
nTPM: 58.5
1916 Female, age 42, unknown 89.8
2699 Male, age 18, unknown 73.1
1851 Male, age 51, unknown 71.3
2665 Male, age 74, both hemispheres 66.7
2241 Male, age 72, unknown 57.4
1941 Male, age 53, unknown 56.9
1889 Female, age 72, unknown 48.7
2409 Female, age 72, unknown 41.2
2583 Male, age 75, right hemisphere 40.1
2590 Female, age 75, unknown 39.4
Superior colliculus
nTPM: 38.0
2664 Male, age 75, both hemispheres 54.1
2087 Female, age 72, unknown 43.0
1796 Male, age 53, unknown 42.9
2668 Female, age 75, unknown 40.7
1895 Male, age 76, right hemisphere 39.7
2261 Male, age 18, unknown 35.8
1995 Male, age 72, unknown 32.0
2587 Male, age 74, left hemisphere 30.9
1839 Male, age 51, unknown 30.4
1913 Female, age 42, unknown 30.1
Ventral tegmental area
nTPM: 45.1
1915 Female, age 42, unknown 59.0
2410 Female, age 72, unknown 55.6
2218 Male, age 76, both hemispheres 47.0
1942 Male, age 51, unknown 46.9
2021 Male, age 53, unknown 31.3
2223 Female, age 72, unknown 30.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.1
Samples: 139

Max nTPM: 29.3
Min nTPM: 6.0
Std nTPM: 4.2
Median nTPM: 13.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 29.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 25.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 24.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 24.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 23.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 22.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 22.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 22.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 22.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 21.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 21.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 55.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.5
FF:10158-103A5 76 years, female 55.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 47.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.2
Samples: 4

Max nTPM: 65.7
Min nTPM: 32.2
Sample A Female 52.3
Sample B Female 38.4
Sample C Male 65.7
Sample D Male 32.2
Midbrain
nTPM: 35.9
Samples: 4

Max nTPM: 48.9
Min nTPM: 30.3
Sample A Female 30.3
Sample B Female 31.2
Sample C Male 48.9
Sample D Male 33.3
Periaqueductal gray
nTPM: 29.4
Samples: 3

Max nTPM: 32.3
Min nTPM: 27.4
Sample B Female 28.5
Sample C Male 32.3
Sample D Male 27.4
Superior colliculi
nTPM: 36.5
Samples: 4

Max nTPM: 43.7
Min nTPM: 31.6
Sample A Female 33.4
Sample B Female 31.6
Sample C Male 43.7
Sample D Male 37.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.6
Samples: 4

Max nTPM: 15.3
Min nTPM: 10.9
Sample A Male 10.9
Sample B Male 13.7
Sample C Female 14.6
Sample D Female 15.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
73513780 Antisense, RP_051121_02_G02, Mouse strain C57BL/6J (56 days, male) 2.2

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