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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SFXN3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
48.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SFXN3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.8
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
73.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
70.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
58.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
45.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
44.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
43.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
39.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
38.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
35.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
35.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
34.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
33.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
465
Tumor
0.8
877
Tumor
0.8
917
Tumor
0.7
283
Tumor
0.7
627
Tumor
0.6
536
Normal
0.6
395
Tumor
0.5
925
Tumor
0.5
311
Tumor
0.5
444
Normal
0.4
185
Tumor
0.4
535
Tumor
0.4
1027
Tumor
0.4
571
Tumor
0.4
421
Tumor
0.4
357
Tumor
0.4
455
Tumor
0.4
563
Tumor
0.3
211
Tumor
0.3
863
Tumor
0.3
524
Normal
0.3
297
Tumor
0.3
135
Tumor
0.3
916
Normal
0.3
257
Tumor
0.3
641
Tumor
0.3
434
Normal
0.3
363
Tumor
0.3
268
Normal
0.3
393
Tumor
0.3
447
Tumor
0.3
967
Tumor
0.3
1045
Tumor
0.3
978
Normal
0.3
192
Normal
0.3
188
Normal
0.2
492
Normal
0.2
146
Normal
0.2
223
Tumor
0.2
851
Tumor
0.2
145
Tumor
0.2
384
Normal
0.2
852
Normal
0.2
227
Tumor
0.2
137
Tumor
0.2
423
Tumor
0.2
661
Tumor
0.2
383
Tumor
0.2
923
Tumor
0.2
478
Normal
0.2
385
Tumor
0.2
126
Normal
0.2
224
Normal
0.2
874
Normal
0.2
125
Tumor
0.2
823
Tumor
0.2
343
Tumor
0.2
416
Normal
0.2
695
Tumor
0.2
344
Normal
0.2
672
Normal
0.2
685
Tumor
0.1
814
Normal
0.1
883
Tumor
0.1
124
Normal
0.1
546
Normal
0.1
857
Tumor
0.1
358
Normal
0.1
867
Tumor
0.1
1022
Normal
0.1
187
Tumor
0.1
141
Tumor
0.1
138
Normal
0.1
816
Normal
0.1
427
Tumor
0.1
697
Tumor
0.1
617
Tumor
0.1
538
Normal
0.1
642
Normal
0.1
468
Normal
0.1
354
Normal
0.1
881
Tumor
0.1
262
Normal
0.1
557
Tumor
0.1
727
Tumor
0.1
498
Normal
0.1
461
Tumor
0.1
362
Normal
0.1
868
Normal
0.1
778
Normal
0.1
558
Normal
0.1
984
Normal
0.1
713
Tumor
0.1
114
Normal
0.1
332
Normal
0.1
534
Normal
0.1
368
Normal
0.1
218
Normal
0.1
744
Normal
0.1
411
Tumor
0.1
412
Normal
0.1
574
Normal
0.1
142
Normal
0.1
214
Normal
0.1
981
Tumor
0.1
328
Normal
0.1
284
Normal
0.1
982
Normal
0.1
1028
Normal
0.1
662
Normal
0.1
312
Normal
0.1
785
Tumor
0.0
161
Tumor
0.0
361
Tumor
0.0
1032
Normal
0.0
213
Tumor
0.0
128
Normal
0.0
212
Normal
0.0
365
Tumor
0.0
636
Normal
0.0
132
Normal
0.0
976
Normal
0.0
516
Normal
0.0
364
Normal
0.0
671
Tumor
0.0
127
Tumor
0.0
953
Tumor
0.0
746
Normal
0.0
448
Normal
0.0
491
Tumor
0.0
366
Normal
0.0
526
Normal
0.0
232
Normal
0.0
352
Normal
0.0
191
Tumor
0.0
452
Normal
0.0
466
Normal
0.0
231
Tumor
0.0
356
Normal
0.0
628
Normal
0.0
686
Normal
0.0
786
Normal
0.0
195
Tumor
0.0
376
Normal
0.0
924
Normal
0.0
824
Normal
0.0
878
Normal
0.0
963
Tumor
0.0
528
Normal
0.0
866
Normal
0.0
467
Tumor
0.0
618
Normal
0.0
756
Normal
0.0
331
Tumor
0.0
914
Normal
0.0
1042
Normal
0.0
261
Tumor
0.0
451
Tumor
0.0
431
Tumor
0.0
884
Normal
0.0
353
Tumor
0.0
272
Normal
0.0
813
Tumor
0.0
572
Normal
0.0
355
Tumor
0.0
446
Normal
0.0
817
Tumor
0.0
954
Normal
0.0
428
Normal
0.0
462
Normal
0.0
392
Normal
0.0
956
Normal
0.0
862
Normal
0.0
554
Normal
0.0
861
Tumor
0.0
742
Normal
0.0
422
Normal
0.0
386
Normal
0.0
464
Normal
0.0
111
Normal
-0.1
186
Normal
-0.1
136
Normal
-0.1
864
Normal
-0.1
918
Normal
-0.1
196
Normal
-0.1
738
Normal
-0.1
494
Normal
-0.1
943
Tumor
-0.1
743
Tumor
-0.1
722
Normal
-0.1
728
Normal
-0.1
1044
Normal
-0.1
433
Tumor
-0.1
314
Normal
-0.1
696
Normal
-0.1
443
Tumor
-0.1
1016
Normal
-0.1
958
Normal
-0.1
952
Normal
-0.1
818
Normal
-0.1
432
Normal
-0.1
926
Normal
-0.1
755
Tumor
-0.1
375
Tumor
-0.1
514
Normal
-0.1
436
Normal
-0.1
666
Normal
-0.1
488
Normal
-0.1
944
Normal
-0.1
716
Normal
-0.1
1014
Normal
-0.1
415
Tumor
-0.1
745
Tumor
-0.1
564
Normal
-0.1
278
Normal
-0.1
474
Normal
-0.1
298
Normal
-0.1
391
Tumor
-0.1
424
Normal
-0.1
858
Normal
-0.1
975
Tumor
-0.1
1046
Normal
-0.1
456
Normal
-0.1
222
Normal
-0.1
228
Normal
-0.1
396
Normal
-0.1
518
Normal
-0.1
147
Tumor
-0.1
327
Tumor
-0.1
664
Normal
-0.1
413
Tumor
-0.1
341
Tumor
-0.1
342
Normal
-0.1
966
Normal
-0.2
968
Normal
-0.2
148
Normal
-0.2
131
Tumor
-0.2
912
Normal
-0.2
172
Normal
-0.2
698
Normal
-0.2
388
Normal
-0.2
922
Normal
-0.2
445
Tumor
-0.2
313
Tumor
-0.2
162
Normal
-0.2
913
Tumor
-0.2
217
Tumor
-0.2
277
Tumor
-0.2
286
Normal
-0.2
113
Tumor
-0.2
525
Tumor
-0.2
721
Tumor
-0.2
426
Normal
-0.2
1015
Tumor
-0.2
723
Tumor
-0.2
983
Tumor
-0.2
715
Tumor
-0.2
472
Normal
-0.2
515
Tumor
-0.2
741
Tumor
-0.2
414
Normal
-0.2
258
Normal
-0.2
724
Normal
-0.2
1026
Normal
-0.2
873
Tumor
-0.2
882
Normal
-0.2
387
Tumor
-0.2
394
Normal
-0.2
567
Tumor
-0.2
616
Normal
-0.2
568
Normal
-0.2
964
Normal
-0.2
367
Tumor
-0.2
513
Tumor
-0.2
1043
Tumor
-0.3
484
Normal
-0.3
267
Tumor
-0.3
482
Normal
-0.3
938
Normal
-0.3
615
Tumor
-0.3
815
Tumor
-0.3
351
Tumor
-0.3
648
Normal
-0.3
517
Tumor
-0.3
714
Normal
-0.3
573
Tumor
-0.3
483
Tumor
-0.3
537
Tumor
-0.3
545
Tumor
-0.3
665
Tumor
-0.3
955
Tumor
-0.4
663
Tumor
-0.4
915
Tumor
-0.4
463
Tumor
-0.4
112
Tumor
-0.4
777
Tumor
-0.4
493
Tumor
-0.4
921
Tumor
-0.4
285
Tumor
-0.4
271
Tumor
-0.4
1025
Tumor
-0.4
957
Tumor
-0.4
471
Tumor
-0.4
737
Tumor
-0.4
477
Tumor
-0.5
527
Tumor
-0.5
1041
Tumor
-0.5
911
Tumor
-0.5
171
Tumor
-0.5
435
Tumor
-0.5
1031
Tumor
-0.5
937
Tumor
-0.5
523
Tumor
-0.5
553
Tumor
-0.5
647
Tumor
-0.5
481
Tumor
-0.6
123
Tumor
-0.6
221
Tumor
-0.6
473
Tumor
-0.6
425
Tumor
-0.7
951
Tumor
-0.7
977
Tumor
-0.7
865
Tumor
-0.7
1013
Tumor
-0.7
497
Tumor
-0.7
487
Tumor
-0.7
965
Tumor
-0.8
1021
Tumor
-0.8
533
Tumor
-0.9
635
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
