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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
64.1
nTPM
HPA Brain:
24.8
nTPM
GTEx:
64.1
nTPM
FANTOM5:
25.7
Scaled Tags Per Million
Pig:
121.0
nTPM
Mouse:
17.4
nTPM
Allen mouse:
18.4
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 14.7
1870
Female, age 42, unknown
22.0
2666
Male, age 74, left hemisphere
19.5
1830
Male, age 51, unknown
19.4
2411
Female, age 72, unknown
16.0
1833
Male, age 53, unknown
15.2
2828
Female, age 72, unknown
12.5
2019
Male, age 18, unknown
11.5
1827
Male, age 72, unknown
10.8
2586
Male, age 75, left hemisphere
9.9
2219
Male, age 76, both hemispheres
9.6
Dorsal raphe nucleus nTPM: 16.7
2047
Male, age 72, unknown
21.9
2298
Female, age 72, unknown
18.0
2016
Female, age 72, unknown
17.7
1828
Male, age 53, unknown
15.8
2750
Male, age 76, both hemispheres
10.4
Inferior colliculus nTPM: 19.6
1890
Male, age 53, unknown
40.9
2097
Female, age 72, unknown
12.5
1848
Female, age 42, unknown
12.4
2849
Male, age 72, unknown
12.4
Median raphe nucleus nTPM: 19.2
2220
Male, age 76, midline
19.2
Periaquaductal grey, anterior nTPM: 14.8
1795
Male, age 51, unknown
16.4
1947
Male, age 18, unknown
15.8
2502
Female, age 75, unknown
12.1
Periaquaductal grey, dorsal nTPM: 15.5
2850
Male, age 76, both hemispheres
19.5
1831
Male, age 72, unknown
17.8
2464
Female, age 72, unknown
14.1
1840
Male, age 53, unknown
10.5
Periaquaductal grey, lateral nTPM: 17.1
2272
Male, age 74, both hemispheres
21.7
2140
Male, age 76, both hemispheres
16.7
2053
Male, age 18, unknown
12.9
Pretectal area nTPM: 12.8
2825
Male, age 18, unknown
17.5
1817
Female, age 42, unknown
16.1
2224
Female, age 72, unknown
16.0
2407
Male, age 75, both hemispheres
13.4
1944
Female, age 72, unknown
13.0
2273
Male, age 74, both hemispheres
12.9
2316
Male, age 76, right hemisphere
12.7
2667
Female, age 75, unknown
11.7
1815
Male, age 53, unknown
9.8
2007
Male, age 72, unknown
9.3
1816
Male, age 51, unknown
7.8
Red nucleus nTPM: 16.9
2769
Male, age 72, unknown
24.1
2227
Male, age 72, unknown
24.0
2503
Female, age 72, unknown
18.0
1821
Female, age 72, unknown
17.0
2588
Male, age 74, left hemisphere
16.9
2785
Male, age 18, unknown
16.3
1904
Male, age 53, unknown
15.0
1954
Female, age 42, unknown
14.9
2584
Male, age 75, left hemisphere
14.7
2823
Male, age 76, right hemisphere
14.4
2725
Female, age 75, unknown
14.2
1865
Male, age 51, unknown
13.3
Substantia nigra nTPM: 17.0
2665
Male, age 74, both hemispheres
33.4
2590
Female, age 75, unknown
20.6
1851
Male, age 51, unknown
19.3
2409
Female, age 72, unknown
19.1
2699
Male, age 18, unknown
16.5
2583
Male, age 75, right hemisphere
13.9
2241
Male, age 72, unknown
12.9
1941
Male, age 53, unknown
12.5
1916
Female, age 42, unknown
11.4
1889
Female, age 72, unknown
10.4
Superior colliculus nTPM: 15.2
2087
Female, age 72, unknown
29.6
2587
Male, age 74, left hemisphere
16.9
2668
Female, age 75, unknown
16.9
2261
Male, age 18, unknown
15.1
1839
Male, age 51, unknown
14.2
1913
Female, age 42, unknown
12.9
1995
Male, age 72, unknown
12.5
1895
Male, age 76, right hemisphere
11.9
1796
Male, age 53, unknown
11.6
2664
Male, age 75, both hemispheres
10.3
Ventral tegmental area nTPM: 24.8
1915
Female, age 42, unknown
30.9
2021
Male, age 53, unknown
30.1
1942
Male, age 51, unknown
26.6
2218
Male, age 76, both hemispheres
22.4
2410
Female, age 72, unknown
20.9
2223
Female, age 72, unknown
18.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
64.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 64.1
Samples: 139
Max nTPM: 2327.3
Min nTPM: 8.8
Std nTPM: 195.4
Median nTPM: 40.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
2327.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
247.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
161.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
143.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
132.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
113.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
112.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
103.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
97.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
96.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
96.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
95.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
93.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
87.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
86.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
85.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
85.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
84.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
84.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
81.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
79.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
75.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
71.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
71.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
70.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
70.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
69.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
68.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
65.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
65.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
63.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
63.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
62.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
62.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
61.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
59.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
59.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
58.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
57.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
57.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
57.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
57.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
56.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
54.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
54.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
52.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
52.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
52.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
51.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
50.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
50.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
50.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
49.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
49.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
48.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
48.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
47.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
47.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
46.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
46.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
43.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
43.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
41.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
41.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
41.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
41.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
40.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
40.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
40.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
40.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
39.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
38.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
37.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
37.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
37.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
36.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
36.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
36.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
35.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
35.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
34.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
34.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
33.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
33.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
32.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
32.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
32.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
31.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
31.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
31.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
30.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
30.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
29.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
29.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
28.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
28.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
28.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
27.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
27.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
27.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
26.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
26.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
26.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
26.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
26.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
26.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
26.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
26.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
25.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
25.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
24.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
24.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
23.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
23.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
23.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
23.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
21.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
21.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
20.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
19.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
19.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
18.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
18.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
18.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
17.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
17.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
17.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
16.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
16.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
16.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
15.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
13.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
12.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
11.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
9.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
9.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
9.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
8.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
8.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
17.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 17.4
Samples: 4
Max nTPM: 23.3
Min nTPM: 14.6
Sample A
Male
23.3
Sample B
Male
15.9
Sample C
Female
14.6
Sample D
Female
15.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.