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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
34.8
nTPM
HPA Brain:
18.9
nTPM
GTEx:
34.8
nTPM
FANTOM5:
11.5
Scaled Tags Per Million
Pig:
25.7
nTPM
Mouse:
15.9
nTPM
Allen mouse:
23.6
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA041264
Antibody HPA041271
Antibody CAB000002
Antibody CAB003761
Antibody CAB013531
Glial cells
Not detected
Not detected
Not detected
Not detected
Not detected
Neuronal cells
Medium
Not detected
Not detected
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
18.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 18.4
2529
Female, age 94, left hemisphere
24.8
2621
Female, age 67, right hemisphere
20.2
1855
Male, age 76, left hemisphere
20.0
1911
Female, age 85, right hemisphere
15.8
1898
Male, age 80, left hemisphere
15.1
2148
Female, age 91, left hemisphere
14.4
Dentate gyrus nTPM: 18.0
2531
Female, age 67, both hemispheres
26.5
2528
Male, age 74, both hemispheres
24.2
2010
Male, age 76, both hemispheres
16.3
2530
Female, age 94, left hemisphere
15.9
1927
Female, age 91, both hemispheres
12.8
2246
Female, age 85, both hemispheres
12.5
Entorhinal gyrus nTPM: 15.5
1787
Male, age 76, left hemisphere
19.9
2686
Male, age 75, right hemisphere
18.6
2117
Female, age 91, right hemisphere
15.6
1938
Female, age 85, left hemisphere
14.5
2613
Female, age 94, left hemisphere
12.5
2764
Male, age 80, right hemisphere
12.2
Hippocampus, CA1 nTPM: 13.7
2045
Male, age 76, both hemispheres
22.2
2082
Female, age 91, right hemisphere
14.3
1873
Female, age 85, both hemispheres
13.5
2527
Male, age 74, both hemispheres
13.3
2749
Male, age 80, left hemisphere
5.1
Hippocampus, CA2 nTPM: 16.2
2437
Female, age 94, left hemisphere
21.5
2113
Female, age 91, right hemisphere
17.5
1940
Female, age 85, left hemisphere
16.6
1963
Male, age 80, left hemisphere
15.3
1892
Male, age 76, both hemispheres
13.9
2249
Male, age 74, both hemispheres
12.4
Hippocampus, CA3 nTPM: 16.4
2861
Female, age 67, both hemispheres
23.6
1891
Female, age 85, both hemispheres
16.8
1867
Male, age 76, both hemispheres
15.7
2137
Male, age 80, left hemisphere
15.6
2620
Female, age 94, left hemisphere
14.3
2436
Male, age 74, both hemispheres
12.4
Parahippocampal cortex nTPM: 17.2
2250
Female, age 67, right hemisphere
24.8
2018
Male, age 76, both hemispheres
23.5
1990
Female, age 91, right hemisphere
23.3
2245
Female, age 91, both hemispheres
19.1
2622
Female, age 67, right hemisphere
15.5
2693
Female, age 94, both hemispheres
14.8
1850
Male, age 80, both hemispheres
13.2
2532
Female, age 72, left hemisphere
13.1
2692
Male, age 74, both hemispheres
12.7
1933
Female, age 85, both hemispheres
12.5
Perirhinal gyrus nTPM: 18.9
2521
Female, age 94, right hemisphere
26.7
1841
Female, age 85, right hemisphere
22.7
2848
Male, age 76, right hemisphere
18.4
1794
Male, age 80, right hemisphere
14.2
1847
Female, age 91, left hemisphere
12.5
Subiculum nTPM: 15.6
2042
Male, age 76, both hemispheres
18.7
2438
Female, age 94, left hemisphere
18.1
2619
Male, age 74, both hemispheres
16.6
2729
Female, age 91, right hemisphere
16.2
1977
Female, age 85, both hemispheres
14.0
1901
Male, age 80, both hemispheres
10.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 34.8
Samples: 197
Max nTPM: 275.2
Min nTPM: 6.5
Std nTPM: 29.5
Median nTPM: 27.1
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
275.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
159.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
118.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
113.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
110.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
110.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
102.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
99.2
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
98.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
94.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
87.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
82.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
80.5
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
80.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
80.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
77.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
77.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
76.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
75.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
75.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
59.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
57.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
56.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
56.0
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
55.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
54.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
54.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
54.1
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
53.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
53.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
50.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
49.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
49.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
49.6
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
49.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
48.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
46.7
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
44.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
43.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
42.9
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
42.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
42.4
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
42.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
42.1
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
42.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
41.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
41.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
40.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
40.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
37.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
37.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
37.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
37.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
36.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
36.0
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
35.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
35.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
35.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
35.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
35.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
35.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
34.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
34.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
34.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
34.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
34.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
34.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
34.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
33.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
33.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
32.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
32.3
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
32.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
31.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
31.8
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
31.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
31.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
31.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
31.1
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
30.9
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
30.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
30.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
30.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
30.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
30.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
29.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
29.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
28.7
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
28.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
28.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
28.3
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
27.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
27.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
27.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
27.4
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
27.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
27.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
27.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
27.1
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
26.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
26.8
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
26.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
26.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
26.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
26.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
26.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
25.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
25.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
25.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
25.3
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
25.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
25.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
24.5
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
24.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
24.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
24.2
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
24.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
23.8
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
23.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
23.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
23.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
23.3
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
22.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
22.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
22.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
22.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
22.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
21.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
21.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
21.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
21.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
20.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
20.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
20.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
20.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
20.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
20.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
20.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
19.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
19.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
19.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
18.8
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
18.5
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
18.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
18.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
18.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
18.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
18.2
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
18.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
18.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
17.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
17.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
17.5
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
17.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
17.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
16.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
16.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
16.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
16.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
16.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
16.0
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
15.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
15.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
15.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
15.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
15.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
15.0
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
15.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
14.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
14.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
14.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
14.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
14.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
14.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
13.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
13.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
13.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
12.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
12.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
12.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
12.1
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
11.9
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
11.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
11.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
10.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
10.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
10.5
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
10.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
10.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
9.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
9.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
8.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
8.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
8.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
8.4
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
7.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
6.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
15.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 15.9
Samples: 4
Max nTPM: 22.4
Min nTPM: 9.4
Sample A
Male
18.4
Sample B
Male
9.4
Sample C
Female
22.4
Sample D
Female
13.4
Hippocampal formation nTPM: 13.9
Samples: 4
Max nTPM: 16.5
Min nTPM: 12.2
Sample A
Male
13.7
Sample B
Male
13.2
Sample C
Female
12.2
Sample D
Female
16.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.