MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:106.6 nTPM
HPA Brain:371.8 nTPM
GTEx:106.6 nTPM
FANTOM5:66.9 Scaled Tags Per Million
Pig:377.7 nTPM
Mouse:274.5 nTPM
Allen mouse:17.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 371.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 316.2
2019 Male, age 18, unknown 410.0
2586 Male, age 75, left hemisphere 408.2
2666 Male, age 74, left hemisphere 383.1
1827 Male, age 72, unknown 365.2
2828 Female, age 72, unknown 326.2
2219 Male, age 76, both hemispheres 294.8
2411 Female, age 72, unknown 292.3
1833 Male, age 53, unknown 235.1
1870 Female, age 42, unknown 223.9
1830 Male, age 51, unknown 223.2
Dorsal raphe nucleus
nTPM: 309.8
2298 Female, age 72, unknown 373.7
2047 Male, age 72, unknown 344.2
1828 Male, age 53, unknown 321.8
2750 Male, age 76, both hemispheres 295.8
2016 Female, age 72, unknown 213.2
Inferior colliculus
nTPM: 286.6
2097 Female, age 72, unknown 341.5
1890 Male, age 53, unknown 293.8
2849 Male, age 72, unknown 257.3
1848 Female, age 42, unknown 253.7
Median raphe nucleus
nTPM: 340.2
2220 Male, age 76, midline 340.2
Periaquaductal grey, anterior
nTPM: 319.6
1795 Male, age 51, unknown 364.9
2502 Female, age 75, unknown 317.8
1947 Male, age 18, unknown 276.2
Periaquaductal grey, dorsal
nTPM: 271.3
1831 Male, age 72, unknown 317.9
1840 Male, age 53, unknown 265.3
2464 Female, age 72, unknown 257.4
2850 Male, age 76, both hemispheres 244.5
Periaquaductal grey, lateral
nTPM: 208.7
2140 Male, age 76, both hemispheres 231.2
2053 Male, age 18, unknown 218.8
2272 Male, age 74, both hemispheres 176.1
Pretectal area
nTPM: 371.8
1817 Female, age 42, unknown 581.1
1816 Male, age 51, unknown 579.3
2007 Male, age 72, unknown 546.6
1944 Female, age 72, unknown 490.1
1815 Male, age 53, unknown 428.8
2667 Female, age 75, unknown 342.9
2224 Female, age 72, unknown 251.0
2825 Male, age 18, unknown 242.8
2407 Male, age 75, both hemispheres 225.4
2316 Male, age 76, right hemisphere 214.1
2273 Male, age 74, both hemispheres 187.4
Red nucleus
nTPM: 255.3
2785 Male, age 18, unknown 369.0
2588 Male, age 74, left hemisphere 362.0
2584 Male, age 75, left hemisphere 319.7
1821 Female, age 72, unknown 265.7
1954 Female, age 42, unknown 245.0
2725 Female, age 75, unknown 241.9
2503 Female, age 72, unknown 228.0
2769 Male, age 72, unknown 218.5
2227 Male, age 72, unknown 216.6
1904 Male, age 53, unknown 203.2
1865 Male, age 51, unknown 199.3
2823 Male, age 76, right hemisphere 194.4
Substantia nigra
nTPM: 318.8
2665 Male, age 74, both hemispheres 437.4
1889 Female, age 72, unknown 432.6
1941 Male, age 53, unknown 408.7
1916 Female, age 42, unknown 367.9
2583 Male, age 75, right hemisphere 322.4
2590 Female, age 75, unknown 285.4
1851 Male, age 51, unknown 279.5
2241 Male, age 72, unknown 234.7
2409 Female, age 72, unknown 223.2
2699 Male, age 18, unknown 196.2
Superior colliculus
nTPM: 302.6
2087 Female, age 72, unknown 463.2
2664 Male, age 75, both hemispheres 365.6
2261 Male, age 18, unknown 358.5
2668 Female, age 75, unknown 325.0
1796 Male, age 53, unknown 305.5
1839 Male, age 51, unknown 269.1
1895 Male, age 76, right hemisphere 246.5
2587 Male, age 74, left hemisphere 241.6
1913 Female, age 42, unknown 230.1
1995 Male, age 72, unknown 221.2
Ventral tegmental area
nTPM: 265.8
2218 Male, age 76, both hemispheres 312.8
2410 Female, age 72, unknown 295.5
1942 Male, age 51, unknown 280.1
1915 Female, age 42, unknown 270.8
2021 Male, age 53, unknown 227.3
2223 Female, age 72, unknown 208.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 106.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 106.6
Samples: 139

Max nTPM: 382.3
Min nTPM: 29.8
Std nTPM: 51.4
Median nTPM: 102.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 382.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 326.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 205.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 189.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 183.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 181.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 179.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 179.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 178.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 171.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 170.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 66.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.9
FF:10158-103A5 76 years, female 66.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 377.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 242.3
Samples: 4

Max nTPM: 308.7
Min nTPM: 147.2
Sample A Female 308.7
Sample B Female 216.3
Sample C Male 296.8
Sample D Male 147.2
Midbrain
nTPM: 297.8
Samples: 4

Max nTPM: 536.7
Min nTPM: 173.2
Sample A Female 195.5
Sample B Female 173.2
Sample C Male 536.7
Sample D Male 285.7
Periaqueductal gray
nTPM: 183.9
Samples: 3

Max nTPM: 222.1
Min nTPM: 161.9
Sample B Female 167.8
Sample C Male 222.1
Sample D Male 161.9
Superior colliculi
nTPM: 377.7
Samples: 4

Max nTPM: 463.7
Min nTPM: 293.1
Sample A Female 343.5
Sample B Female 463.7
Sample C Male 410.4
Sample D Male 293.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 274.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 274.5
Samples: 4

Max nTPM: 298.5
Min nTPM: 247.2
Sample A Male 247.2
Sample B Male 270.9
Sample C Female 298.5
Sample D Female 281.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 17.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.7
69262230 Antisense, RP_050301_01_F10, Mouse strain C57BL/6J (56 days, male) 24.1
70812774 Antisense, RP_050712_02_E12, Mouse strain C57BL/6J (56 days, male) 11.2

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