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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLEKHA1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
46.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
30.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
25.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
22.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLEKHA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.2
Number of samples
231
Samples
Sample
Description
TPM
DO45121
0 years, male, NA, stage:3, alive, 1530 days
36.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
35.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
35.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
33.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
28.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1025
Tumor
1.4
921
Tumor
1.2
553
Tumor
1.2
523
Tumor
1.1
1021
Tumor
1.0
695
Tumor
1.0
431
Tumor
1.0
951
Tumor
1.0
271
Tumor
0.9
925
Tumor
0.9
697
Tumor
0.8
537
Tumor
0.8
967
Tumor
0.8
413
Tumor
0.7
983
Tumor
0.7
635
Tumor
0.7
533
Tumor
0.7
1031
Tumor
0.6
881
Tumor
0.6
471
Tumor
0.6
231
Tumor
0.6
817
Tumor
0.6
455
Tumor
0.6
481
Tumor
0.6
465
Tumor
0.5
851
Tumor
0.5
367
Tumor
0.5
517
Tumor
0.5
743
Tumor
0.5
1043
Tumor
0.5
813
Tumor
0.5
493
Tumor
0.5
483
Tumor
0.5
877
Tumor
0.5
567
Tumor
0.5
975
Tumor
0.5
227
Tumor
0.4
713
Tumor
0.4
545
Tumor
0.4
815
Tumor
0.4
883
Tumor
0.4
785
Tumor
0.4
923
Tumor
0.4
331
Tumor
0.4
641
Tumor
0.4
571
Tumor
0.4
131
Tumor
0.3
477
Tumor
0.3
924
Normal
0.3
221
Tumor
0.3
488
Normal
0.3
332
Normal
0.3
387
Tumor
0.3
615
Tumor
0.3
1046
Normal
0.3
982
Normal
0.3
298
Normal
0.3
873
Tumor
0.3
937
Tumor
0.3
527
Tumor
0.3
756
Normal
0.2
1042
Normal
0.2
616
Normal
0.2
915
Tumor
0.2
368
Normal
0.2
351
Tumor
0.2
411
Tumor
0.2
473
Tumor
0.2
823
Tumor
0.2
554
Normal
0.2
448
Normal
0.2
341
Tumor
0.2
443
Tumor
0.2
211
Tumor
0.2
135
Tumor
0.2
1028
Normal
0.2
741
Tumor
0.2
314
Normal
0.2
742
Normal
0.2
284
Normal
0.2
723
Tumor
0.2
1022
Normal
0.2
535
Tumor
0.2
964
Normal
0.2
123
Tumor
0.2
171
Tumor
0.2
445
Tumor
0.2
484
Normal
0.2
498
Normal
0.2
912
Normal
0.2
557
Tumor
0.2
728
Normal
0.2
355
Tumor
0.2
722
Normal
0.2
1044
Normal
0.2
922
Normal
0.2
1032
Normal
0.2
944
Normal
0.2
228
Normal
0.2
558
Normal
0.2
956
Normal
0.2
518
Normal
0.2
696
Normal
0.2
361
Tumor
0.2
525
Tumor
0.2
1045
Tumor
0.2
114
Normal
0.2
494
Normal
0.2
528
Normal
0.2
327
Tumor
0.1
1014
Normal
0.1
128
Normal
0.1
1026
Normal
0.1
954
Normal
0.1
384
Normal
0.1
538
Normal
0.1
111
Normal
0.1
636
Normal
0.1
745
Tumor
0.1
958
Normal
0.1
147
Tumor
0.1
685
Tumor
0.1
354
Normal
0.1
546
Normal
0.1
778
Normal
0.1
786
Normal
0.1
738
Normal
0.1
277
Tumor
0.1
1027
Tumor
0.1
568
Normal
0.1
563
Tumor
0.1
363
Tumor
0.1
953
Tumor
0.1
267
Tumor
0.1
426
Normal
0.1
862
Normal
0.1
642
Normal
0.1
1041
Tumor
0.1
278
Normal
0.1
721
Tumor
0.1
984
Normal
0.1
482
Normal
0.1
926
Normal
0.1
698
Normal
0.1
911
Tumor
0.1
884
Normal
0.1
715
Tumor
0.1
415
Tumor
0.1
572
Normal
0.1
882
Normal
0.1
878
Normal
0.1
223
Tumor
0.1
714
Normal
0.1
472
Normal
0.1
196
Normal
0.1
564
Normal
0.1
385
Tumor
0.1
343
Tumor
0.1
186
Normal
0.1
868
Normal
0.1
744
Normal
0.1
978
Normal
0.1
142
Normal
0.1
963
Tumor
0.1
366
Normal
0.0
818
Normal
0.0
474
Normal
0.0
393
Tumor
0.0
127
Tumor
0.0
222
Normal
0.0
526
Normal
0.0
286
Normal
0.0
727
Tumor
0.0
312
Normal
0.0
462
Normal
0.0
918
Normal
0.0
857
Tumor
0.0
376
Normal
0.0
422
Normal
0.0
446
Normal
0.0
618
Normal
0.0
113
Tumor
0.0
686
Normal
0.0
628
Normal
0.0
647
Tumor
0.0
952
Normal
0.0
1016
Normal
0.0
195
Tumor
0.0
297
Tumor
0.0
746
Normal
0.0
524
Normal
0.0
224
Normal
0.0
124
Normal
0.0
148
Normal
0.0
352
Normal
0.0
976
Normal
0.0
864
Normal
0.0
755
Tumor
0.0
435
Tumor
0.0
362
Normal
0.0
534
Normal
0.0
671
Tumor
0.0
232
Normal
0.0
858
Normal
0.0
914
Normal
0.0
716
Normal
0.0
344
Normal
0.0
427
Tumor
0.0
478
Normal
0.0
285
Tumor
0.0
456
Normal
0.0
574
Normal
0.0
257
Tumor
0.0
342
Normal
0.0
968
Normal
0.0
421
Tumor
0.0
516
Normal
0.0
965
Tumor
0.0
824
Normal
0.0
388
Normal
0.0
467
Tumor
0.0
447
Tumor
0.0
414
Normal
0.0
416
Normal
0.0
466
Normal
0.0
357
Tumor
0.0
126
Normal
0.0
394
Normal
0.0
957
Tumor
0.0
492
Normal
-0.1
867
Tumor
-0.1
874
Normal
-0.1
125
Tumor
-0.1
395
Tumor
-0.1
185
Tumor
-0.1
311
Tumor
-0.1
672
Normal
-0.1
852
Normal
-0.1
212
Normal
-0.1
966
Normal
-0.1
955
Tumor
-0.1
364
Normal
-0.1
573
Tumor
-0.1
112
Tumor
-0.1
814
Normal
-0.1
145
Tumor
-0.1
436
Normal
-0.1
428
Normal
-0.1
353
Tumor
-0.1
452
Normal
-0.1
392
Normal
-0.1
214
Normal
-0.1
358
Normal
-0.1
737
Tumor
-0.1
916
Normal
-0.1
468
Normal
-0.1
424
Normal
-0.1
463
Tumor
-0.1
172
Normal
-0.1
866
Normal
-0.1
514
Normal
-0.1
412
Normal
-0.1
268
Normal
-0.1
218
Normal
-0.1
977
Tumor
-0.1
444
Normal
-0.1
666
Normal
-0.1
391
Tumor
-0.1
536
Normal
-0.1
938
Normal
-0.1
497
Tumor
-0.1
664
Normal
-0.2
187
Tumor
-0.2
662
Normal
-0.2
917
Tumor
-0.2
328
Normal
-0.2
432
Normal
-0.2
162
Normal
-0.2
425
Tumor
-0.2
356
Normal
-0.2
386
Normal
-0.2
258
Normal
-0.2
188
Normal
-0.2
464
Normal
-0.2
617
Tumor
-0.2
513
Tumor
-0.2
396
Normal
-0.2
648
Normal
-0.2
981
Tumor
-0.2
262
Normal
-0.2
913
Tumor
-0.2
816
Normal
-0.2
138
Normal
-0.2
191
Tumor
-0.2
261
Tumor
-0.2
272
Normal
-0.2
146
Normal
-0.2
136
Normal
-0.3
515
Tumor
-0.3
313
Tumor
-0.3
863
Tumor
-0.3
161
Tumor
-0.3
665
Tumor
-0.3
777
Tumor
-0.3
217
Tumor
-0.3
383
Tumor
-0.3
132
Normal
-0.3
451
Tumor
-0.3
861
Tumor
-0.3
192
Normal
-0.3
137
Tumor
-0.3
433
Tumor
-0.3
434
Normal
-0.3
213
Tumor
-0.4
375
Tumor
-0.4
491
Tumor
-0.4
423
Tumor
-0.5
487
Tumor
-0.5
461
Tumor
-0.5
1013
Tumor
-0.5
365
Tumor
-0.5
141
Tumor
-0.6
627
Tumor
-0.7
943
Tumor
-0.7
865
Tumor
-0.7
724
Normal
-0.8
661
Tumor
-0.8
283
Tumor
-0.9
663
Tumor
-0.9
1015
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
